Origin IGS: gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taatgccgatatgaacatccccctttccccccttccaaggaggaatgcggaactgacggctgaccactgtaacagctccgaaggggtgcgttaattcagcccaatgtgtagcgaagcaaagcgttgggggaaaagaatacccactcctgcggagggctgtaagcctgatataaaatgttgatttatttaatggtcgagatgttttacttaaacaaacttgcgtgctttgcgtaacttttgcgttccttgtggtgatcttactgccaagttcgcaaagaacgacgcaaaggacacaaaaaaacagcttaaatatttacgtattctcagaaatcgtttataactttgtagtatcatcaaaaatgcaaggctatggaaataacaaccgacactccacccgacaattcgatgcgcctcgcaaaccgcaccggaggcgcagcatgacaactatctggaacgcggaaacaagtataaacgtttaaaaacagaaaaac Mask Tandem Repeat Region ================================================ gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Find is-nt database================================================ Query_seq: TF0365:TF0366|TF0365:TF0366:hypothetical protein:hypothetical protein:->->:383213..383703 491 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0365:TF0366|TF0365:TF0366:hypothetical protein:hypothetical protein:->->:383213..383703 491 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0365:TF0366|TF0365:TF0366:hypothetical protein:hypothetical protein:->->:383213..383703 491 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 23 End: 121 ...................... M L V S A F Q I V V M L R L R C G L R G A S N C R V E C R L L F P .................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 43 Strand: + Start: 7 End: 135 ...... M F L N V Y T C F R V P D S C H A A P P V R F A R R I E L S G G V S V V I S I A L H F .................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 48 End: 281 ............................................... M S C C A S G A V C E A H R I V G W S V G C Y F H S L A F L M I L Q S Y K R F L R I R K Y L S C F F V S F A S F F A N L .................................................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 306 End: 398 ................................................................................................................................................................................................................................................................................................................. M N Q H F I S G L Q P S A G V G I L F P Q R F A S L H I G L N ............................................................................................. Protein_Len: 31 Strand: + Start: 397 End: 489 ............................................................................................................................................................................................................................................................................................................................................................................................................ M N A P L R S C Y S G Q P S V P H S S L E G G K G G C S Y R H .. Protein_Len: 60 Strand: + Start: 179 End: 490 .................................................................................................................................................................................. M F K L F F C V L C V V L C E L G S K I T T R N A K V T Q S T Q V C L S K T S R P L N K S T F Y I R L T A L R R S G Y S . Protein_Len: 37 Strand: - Start: 322 End: 432 ................................................................................................................................................................................................................................................................................................................................. I L S V A R R L L P Y E K G G V S Q K A V C Q A S N V C G K P A T V T T M ........................................................... Protein_Len: 40 Strand: - Start: 155 End: 274 .......................................................................................................................................................... L R N R L I R L Y K L Q K K T D K A D N K A F K A T L D G C P V C F N R L A R M ......................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 16 End: 270 ............... Q R T S H R N N N G Y G Q M K S S V V F N Y V I E S F V Y I N L S N K Q T R Q T T R Q S S P L L I V V L F A F T V C L M ............................................................................................................................................................................................................................. Protein_Len: 30 Strand: - Start: 2 End: 91 . K E T K L R K Y K N G R E L Y N D H Q A E P A T Q S A C R M ................................................................................................................................................................................................................................................................................................................................................................................................................ gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 151 End: 180 ......................................................................................................................................................ATTTACGTATTCTCAGAAATCGTTTATAAC....................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TF0365:TF0366|TF0365:TF0366:hypothetical protein:hypothetical protein:->->:383213..383703 491 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Intra-Species Hit: Count: 11 Min: 1 Max: 491 Len: 491 Subject: tfor_TF0365_TF0366|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[383213,383703]|491 HSP 1 e-value: 0.0 bit: 932.0 Len: 491 Query Start:1 Query End:491 Subject Strand: POSITIVE Subject Start: 1 Subject End: 491 gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgnnnnnnngtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta gtttttctgtttttaaacgtttatacttgtttccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatttaagctgtttttttgtgtcctttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Subject: tfor_TF0361_TF0362|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[379871,380091]|221 HSP 1 e-value: 1.0E-119 bit: 430.0 Len: 221 Query Start:271 Query End:491 Subject Strand: POSITIVE Subject Start: 1 Subject End: 221 ..............................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta ..............................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcatcccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 1.0E-107 bit: 391.0 Len: 217 Query Start:215 Query End:431 Subject Strand: POSITIVE Subject Start: 210 Subject End: 426 ......................................................................................................................................................................................................................ctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca............................................................ ......................................................................................................................................................................................................................ctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca............................................................ HSP 2 e-value: 8.0E-51 bit: 202.0 Len: 173 Query Start:12 Query End:184 Subject Strand: POSITIVE Subject Start: 18 Subject End: 191 ...........tttaaacgtttatacttgttt-ccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatattt................................................................................................................................................................................................................................................................................................................... ...........tttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattt................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2169_TF2171|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2345415,2345624]|210 HSP 1 e-value: 9.0E-94 bit: 345.0 Len: 206 Query Start:282 Query End:487 Subject Strand: POSITIVE Subject Start: 1 Subject End: 206 .........................................................................................................................................................................................................................................................................................taagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggc.... .........................................................................................................................................................................................................................................................................................taagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttttcccaatgcttcgcttcgctacacattgggctgaattaatgcgcccctgcggagctgttacagcggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggc.... Subject: tfor_TF0349_TF0350|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[370780,370933]|154 HSP 1 e-value: 2.0E-79 bit: 297.0 Len: 154 Query Start:271 Query End:424 Subject Strand: POSITIVE Subject Start: 1 Subject End: 154 ..............................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttaca................................................................... ..............................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcagacttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttaca................................................................... Subject: tfor_TF2108_TF2109|hypothetical protein:possible metallo-beta-lactamase family protein|POSITIVE:POSITIVE|[2277750,2278081]|332 HSP 1 e-value: 3.0E-66 bit: 254.0 Len: 159 Query Start:275 Query End:433 Subject Strand: POSITIVE Subject Start: 1 Subject End: 160 ..................................................................................................................................................................................................................................................................................gtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattc-ttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagc.......................................................... ..................................................................................................................................................................................................................................................................................gtttgtttaagtaaaacatctcgaccattaaataaattaatattttatataaggtttacagccctccgcaggagtgggtattcttttttccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcagc.......................................................... Subject: tfor_TF2176_TF2177|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2349246,2349420]|175 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 172 Query Start:1 Query End:172 Subject Strand: POSITIVE Subject Start: 1 Subject End: 175 gtttttctgtttttaaacgtttatacttgttt-ccgcgttccagatagttgtcat--gctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaat............................................................................................................................................................................................................................................................................................................................... gtttttctgtttttaaacgtttatacttgttttccgcgttccggatatttcttttacgctgcgcctccgttgcagtttgcgaggcgcatcaaattgtcgggtggagtgtcggttgttatttccatagccttgcgtttttgatgatactacaaagttagaaacattttttgagaat............................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2165_TF2166|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2341983,2342254]|272 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 123 Query Start:217 Query End:339 Subject Strand: POSITIVE Subject Start: 8 Subject End: 130 ........................................................................................................................................................................................................................ttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccct........................................................................................................................................................ ........................................................................................................................................................................................................................ttgcgaacttggaggtaaaataaccgcagggaacgcgaaagttacacaaagcatgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccct........................................................................................................................................................ HSP 2 e-value: 3.0E-41 bit: 170.0 Len: 102 Query Start:386 Query End:487 Subject Strand: POSITIVE Subject Start: 167 Subject End: 268 .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggc.... .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaatgcgcccctgcggagctgttacagcggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggc.... Subject: tfor_TF1713_TF1714|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1833777,1834264]|488 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 129 Query Start:55 Query End:183 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 432 ......................................................gctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgc-atttttgatgatactacaaagttataaacgatttctgagaatacgtaaatatt.................................................................................................................................................................................................................................................................................................................... ......................................................gctgcgcctccggtgcggtctgtgaggcgcatcgaattgtcgggtggagtgtcggtcgtt-tttccatagccttgcgttttttgatgatactacaaagttagaaacattttttgagaatatgcaaatatt.................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 70 Query Start:204 Query End:273 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 292 ...........................................................................................................................................................................................................tttgcgtcgttctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgca.......................................................................................................................................................................................................................... ...........................................................................................................................................................................................................tttgcgtcgttctttgcgtcctttgtggtaagatcaccgcaaggatcgcaaaggttacgcaacgcacgca.......................................................................................................................................................................................................................... HSP 3 e-value: 5.0E-9 bit: 63.9 Len: 60 Query Start:287 Query End:346 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 172 ..............................................................................................................................................................................................................................................................................................aaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcagg................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................aaaacaactcaaccattaaacaactcaacattttatgccaggcttacagccctccacagg................................................................................................................................................. Subject: tfor_TF0344_TF0346|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[367024,367187]|164 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 106 Query Start:386 Query End:491 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggcatta .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacacgccctttcagggctcttacagcagtcagccgtcagttccgcattcctccttggaagggggggaagggggatgttcatatcggcatta HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 29 Query Start:316 Query End:344 Subject Strand: POSITIVE Subject Start: 2 Subject End: 30 ...........................................................................................................................................................................................................................................................................................................................attttatatcaggcttacagccctccgca................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................attttatatcaggcttacagccctccgca................................................................................................................................................... Subject: tfor_TF0339_TF0340|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[363808,364032]|225 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 102 Query Start:386 Query End:487 Subject Strand: POSITIVE Subject Start: 120 Subject End: 221 .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacgcaccccttcggagctgttacagtggtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgttcatatcggc.... .................................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacacgccctttcagggctcttacagcagtcagccgtcagttccgcattcctccttggaaggggggaaagggggatgtgcatatcggc.... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUUUUUCUGUUUUUAAACGUUUAUACUUGUUUCCGCGUUCCAGAUAGUUGUCAUGCUGCGCCUCCGGUGCGGUUUGCGAGGCGCAUCGAAUUGUCGGGUGGAGUGUCGGUUGUUAUUUCCAUAGCCUUGCAUUUUUGAUGAUACUACAAAGUUAUAAACGAUUUCUGAGAAUACGUAAAUAUUUAAGCUGUUUUUUUGUGUCCUUUGCGUCGUUCUUUGCGAACUUGGCAGUAAGAUCACCACAAGGAACGCAAAAGUUACGCAAAGCACGCAAGUUUGUUUAAGUAAAACAUCUCGACCAUUAAAUAAAUCAACAUUUUAUAUCAGGCUUACAGCCCUCCGCAGGAGUGGGUAUUCUUUUCCCCCAACGCUUUGCUUCGCUACACAUUGGGCUGAAUUAACGCACCCCUUCGGAGCUGUUACAGUGGUCAGCCGUCAGUUCCGCAUUCCUCCUUGGAAGGGGGGAAAGGGGGAUGUUCAUAUCGGCAUUA (((((.((......(((((((((....(((((.((..(((((((.((((((..((.(((((((((((......))).)))))))).))...(((((...(((((((.((((((.......))))))..)))))))...)))))..............)))))))))).)))..)).)))))..))))).)))).(((((((.((((((((..((.((((((..((((...((......))..))))...))))))))..)))))))).)))))))........)).))))).....(((((((..(((((.......))))).........(((((..((((.(((.(((.((((((......(((((.(....((...))....).)))))..))))..)).))).))).)))))))))...))))))).((((...(((((.(.((((((((.....)))))))).).)))))........)))).... (-145.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUGCCGAUAUGAACAUCCCCCUUUCCCCCCUUCCAAGGAGGAAUGCGGAACUGACGGCUGACCACUGUAACAGCUCCGAAGGGGUGCGUUAAUUCAGCCCAAUGUGUAGCGAAGCAAAGCGUUGGGGGAAAAGAAUACCCACUCCUGCGGAGGGCUGUAAGCCUGAUAUAAAAUGUUGAUUUAUUUAAUGGUCGAGAUGUUUUACUUAAACAAACUUGCGUGCUUUGCGUAACUUUUGCGUUCCUUGUGGUGAUCUUACUGCCAAGUUCGCAAAGAACGACGCAAAGGACACAAAAAAACAGCUUAAAUAUUUACGUAUUCUCAGAAAUCGUUUAUAACUUUGUAGUAUCAUCAAAAAUGCAAGGCUAUGGAAAUAACAACCGACACUCCACCCGACAAUUCGAUGCGCCUCGCAAACCGCACCGGAGGCGCAGCAUGACAACUAUCUGGAACGCGGAAACAAGUAUAAACGUUUAAAAACAGAAAAAC ....((((.........(((.(..((((..(((....))).)))).).))).....)))).(((((.....(((((((((.(((((((.((...(((..((((((((...((...))...)))))))).)))......)).))))))).))))..)))))............(((((......)))))..))))).(((((((((((((........(((.((.((((((((...(((((((...((((..(((....)))..).)))..)))))))....)))))))).)).)))....................((..(((.((((.....((((((.(((((((.............))))))).))))))............................(((.((((((((((.....))....))))))))...)))......)))))))..)).....))))).)))))))).............. (-131.76) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1064 110 61 203 154 tfor:TF1714|5end_hypothetical_protein_1834125..1834355_POSITIVE 882 410 363 103 56 tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE 730 439 391 211 162 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 717 410 363 114 68 tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE 717 410 363 107 61 tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE 702 410 362 202 146 tfor:TF1406|5end_transposase_1481758..1481988_POSITIVE 662 480 431 213 163 tfor:TF0536|5end_conserved_hypothetical_protein_561917..562147_POSITIVE 651 400 351 98 47 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 628 479 440 47 5 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 625 478 433 201 152 tfor:TF1840|5end_transposase_1990221..1990451_POSITIVE 620 370 324 78 33 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 620 370 324 213 168 tfor:TF0823|5end_conserved_hypothetical_protein_880660..880890_POSITIVE 617 410 363 55 8 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 587 380 333 186 141 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 585 376 331 46 2 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 575 430 386 228 184 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 569 418 371 176 130 tfor:TF2517|5end_hypothetical_protein_2695089..2695319_POSITIVE 568 379 331 68 20 tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE 563 439 391 214 166 tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE 549 370 324 212 166 tfor:TF1187|5end_hypothetical_protein_1269625..1269855_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 677 408 364 72 28 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 665 460 411 114 63 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 603 487 443 97 50 tfor:TF2651|3end_hypothetical_protein_2822014..2822164_POSITIVE 578 490 441 92 30 tfor:TF0828|3end_hypothetical_protein_887508..887658_POSITIVE 570 458 411 151 101 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 568 379 331 137 89 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 559 380 333 145 97 tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE 547 479 433 96 49 tfor:TF0821|3end_hypothetical_protein_880195..880345_POSITIVE 537 370 324 108 62 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 527 479 433 117 68 tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE 522 477 432 151 106 tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE 511 367 324 132 88 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 499 410 369 44 4 tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE 439 420 371 63 22 tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE 438 109 66 147 94 tfor:TF2774|3end_2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase_2959719..2959869_POSITIVE 438 108 63 85 23 tfor:TF1233|3end_dihydrodipicolinate_synthase_1318855..1319005_POSITIVE 438 100 52 119 54 tfor:TF0247|3end_conserved_hypothetical_protein_278348..278498_POSITIVE 434 465 423 119 59 tfor:TF0685|3end_hypothetical_protein_731132..731282_POSITIVE 432 100 51 148 88 tfor:TF1186|3end_hypothetical_protein_1269815..1269965_POSITIVE 432 84 52 151 116 tfor:TF0432|3end_3-deoxy-manno-octulosonate_cytidylyltransferase_453366..453516_POSITIVE