Origin IGS: atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgagaaaagtgaaaaacgaaaagtgaaaagtgatgctcttcgggcgttgagttgttgaattgttggctgactgctgaaaactgattgctaataaattaattcaggcttacagccctcaaaaaacaagagcggaaatcaaattaccccacccttgcgggatggggctgaaatagaacgggctttcagccctgcgagtattggatgcccttcgggcgttgagttgtttgattgttgagttgttgaattgttttgactgttggctgatagctgactgcttgaaaactgatagctgtgaccactgtaacagctccgaaggggtgcgttaattcagcccaatgtgtagcgaagcgaagcgttgggggaaaagaatacccactcctgcggagggctgaaagcctgatataaaatgttgatttatttaatggtcgagatgttttacttaaacaaacttgcgtgctttgtgtaacttttgcgttccttgcggtgatcttaccgccaagttcgcaaaggacgcaaaaaaacagacaaaatatttgcatattctcaaaaaatgtttttaactttgtagtatcataaaaaacgcaaggctatggaaataacgaccgacactccacccgacaattcgctgcgcctcacaggccgcaccggaggcgcagcgtaacaactatccggaacgcggaaaacaagtataaacgtttaaacacgaaaaaaagaagat Mask Tandem Repeat Region ================================================ atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Find is-nt database================================================ Query_seq: TF0358:TF0359|TF0358:TF0359:hypothetical protein:conserved hypothetical protein:->->:376365..377082 718 atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0358:TF0359|TF0358:TF0359:hypothetical protein:conserved hypothetical protein:->->:376365..377082 718 atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0358:TF0359|TF0358:TF0359:hypothetical protein:conserved hypothetical protein:->->:376365..377082 718 atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 29 End: 145 ............................ M L V F R V P D S C Y A A P P V R P V R R S E L S G G V S V V I S I A L R F L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 55 End: 159 ...................................................... M L R C A S G A A C E A Q R I V G W S V G R Y F H S L A F F M I L Q S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 172 End: 276 ........................................................................................................................................................................... M R I C K Y F V C F F A S F A N L A V R S P Q G T Q K L H K A R K F V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 301 End: 393 ............................................................................................................................................................................................................................................................................................................ M N Q H F I S G F Q P S A G V G I L F P Q R F A S L H I G L N ..................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 180 End: 533 ................................................................................................................................................................................... M Q I F C L F F C V L C E L G G K I T A R N A K V T Q S T Q V C L S K T S R P L N K S T F Y I R L S A L R R S G Y S F P ......................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 392 End: 580 ....................................................................................................................................................................................................................................................................................................................................................................................................... M N A P L R S C Y S G H S Y Q F S S S Q L S A N S Q N N S T T Q Q S N N S T P E G H P I L A G L K A R S I S A P S R K G .......................................................................................................................................... Protein_Len: 60 Strand: + Start: 412 End: 600 ........................................................................................................................................................................................................................................................................................................................................................................................................................... M L Q W S Q L S V F K Q S A I S Q Q S K Q F N N S T I K Q L N A R R A S N T R R A E S P F Y F S P I P Q G W G N L I S A ...................................................................................................................... Protein_Len: 30 Strand: + Start: 627 End: 716 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S N Q F S A V S Q Q F N N S T P E E H H F S L F V F H F S .. Protein_Len: 33 Strand: + Start: 619 End: 717 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N L L A I S F Q Q S A N N S T T Q R P K S I T F H F S F F T F L . Protein_Len: 30 Strand: - Start: 549 End: 638 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K L G M G C P H P L K I E A R T K Q P S Y A Q I L K N A I M ................................................................................ Protein_Len: 46 Strand: - Start: 487 End: 624 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C D F L E V G S P C G I S A P S F A R E I E A G D R L P P T I Q N G S K N K S P Q L G S N M .............................................................................................. Protein_Len: 45 Strand: - Start: 396 End: 530 ........................................................................................................................................................................................................................................................................................................................................................................................................... R V G E S S N C H D C S D T K L C D A I L W C D F C N L L E V I L C S L A R L A D L V R M ............................................................................................................................................................................................ Protein_Len: 40 Strand: - Start: 317 End: 436 ............................................................................................................................................................................................................................................................................................................................ I L S E A R R L L P Y E K G G V S R K A V C Q A S N V C G K P A T V T T V A I M .......................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 162 End: 269 ................................................................................................................................................................. F C K K L I H L Y K T Q K K A D K A F K A T L D G C P V C F N C L A R M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 40 Strand: - Start: 146 End: 265 ................................................................................................................................................. S V V F N F V N K S F I C I N Q R N K Q T R Q S S P P L I V A L F A F T V C L M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 95 HP_score: -13.2 Tail_Score: -3.33162 Start: 59 End: 97 Full_Region: GTTCCGGATAGTTGT TACGCTGCGCCTCCGG TGCGGC CTGTGAGGCGCAGCGAA TTGTCGGGTGGAGTG ..........................................................TACGCTGCGCCTCCGGTGCGGCCTGTGAGGCGCAGCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 56 HP_score: -2.7 Tail_Score: -4.07647 Start: 551 End: 578 Full_Region: AAAGCCCGTTCTATT TCAGCCCCATCC CGCAA GGGTGGGGTAA TTTGATTTCCGCTCT ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCCATCCCGCAAGGGTGGGGTAA............................................................................................................................................ TransTerm Strand: + Conf: 73 HP_score: -10.4 Tail_Score: -3.0693 Start: 555 End: 575 Full_Region: CCCGTTCTATTTCAG CCCCATCC CGCAA GGGTGGGG TAATTTGATTTCCGC ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATCCCGCAAGGGTGGGG............................................................................................................................................... TransTerm Strand: + Conf: 40 HP_score: -3.0 Tail_Score: -2.66257 Start: 678 End: 694 Full_Region: AACAACTCAACGCCC GAAGAG CATCA CTTTTC ACTTTTCGTTTTTCA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATCACTTTTC........................ Find igs database================================================ Query_seq: TF0358:TF0359|TF0358:TF0359:hypothetical protein:conserved hypothetical protein:->->:376365..377082 718 atcttctttttttcgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagccaacagtcaaaacaattcaacaactcaacaatcaaacaactcaacgcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Intra-Species Hit: Count: 20 Min: 14 Max: 718 Len: 705 Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 0.0 bit: 842.0 Len: 446 Query Start:14 Query End:459 Subject Strand: POSITIVE Subject Start: 14 Subject End: 459 .............cgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgnnnnnnngcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagc................................................................................................................................................................................................................................................................... .............cgtgtttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgtttttttgcgtcctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagc................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-117 bit: 424.0 Len: 214 Query Start:505 Query End:718 Subject Strand: POSITIVE Subject Start: 505 Subject End: 718 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcccgaagggcatccaatactcgcagggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca Subject: tfor_TF0365_TF0366|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[383213,383703]|491 HSP 1 e-value: 1.0E-107 bit: 391.0 Len: 217 Query Start:210 Query End:426 Subject Strand: POSITIVE Subject Start: 215 Subject End: 431 .................................................................................................................................................................................................................ctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................ctttgcgaacttggcagtaagatcaccacaaggaacgcaaaagttacgcaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-50 bit: 202.0 Len: 174 Query Start:18 Query End:191 Subject Strand: POSITIVE Subject Start: 12 Subject End: 184 .................tttaaacgtttatacttgttttccgcgttccggatagttgttacgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaatatgcaaatattt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................tttaaacgtttatacttgttt-ccgcgttccagatagttgtcatgctgcgcctccggtgcggtttgcgaggcgcatcgaattgtcgggtggagtgtcggttgttatttccatagccttgcatttttgatgatactacaaagttataaacgatttctgagaatacgtaaatattt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1715_TF1716|thermolysin; zinc metalloprotease:hypothetical protein|POSITIVE:POSITIVE|[1837263,1837581]|319 HSP 1 e-value: 2.0E-86 bit: 321.0 Len: 190 Query Start:529 Query End:718 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 190 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggtaatttgatttccgctcttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgtaagcccgttttatttcagccccatcccgcaagggtggggtaatttgatttcctcccttgttttttgagggctgtaagcctgaattaatttattagcaatcagttttcagcagtcagccaacaattaaacaactcaacgcccgaagggcatcacttttcacttttagtttttcacttttctca Subject: tfor_TF0361_TF0362|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[379871,380091]|221 HSP 1 e-value: 1.0E-78 bit: 295.0 Len: 161 Query Start:266 Query End:426 Subject Strand: POSITIVE Subject Start: 1 Subject End: 161 .........................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcatcccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0349_TF0350|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[370780,370933]|154 HSP 1 e-value: 2.0E-74 bit: 281.0 Len: 154 Query Start:266 Query End:419 Subject Strand: POSITIVE Subject Start: 1 Subject End: 154 .........................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttaca........................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................gcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcagacttacagccctccgcaggagtgggtattcttttcccccaacgctttgcttcgctacacattgggctgaattaacgcaccccttcggagctgttaca........................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2108_TF2109|hypothetical protein:possible metallo-beta-lactamase family protein|POSITIVE:POSITIVE|[2277750,2278081]|332 HSP 1 e-value: 3.0E-73 bit: 278.0 Len: 190 Query Start:270 Query End:459 Subject Strand: POSITIVE Subject Start: 1 Subject End: 189 .............................................................................................................................................................................................................................................................................gtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttc-ccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtcacagctatcagttttcaagcagtcagctatcagc................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................gtttgtttaagtaaaacatctcgaccattaaataaattaatattttatataaggtttacagccctccgcaggagtgggtattcttttttccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggt--cagctatcagcttttaagcagtcagctatcagc................................................................................................................................................................................................................................................................... Subject: tfor_TF2169_TF2171|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2345415,2345624]|210 HSP 1 e-value: 3.0E-60 bit: 234.0 Len: 150 Query Start:277 Query End:426 Subject Strand: POSITIVE Subject Start: 1 Subject End: 150 ....................................................................................................................................................................................................................................................................................taagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcaggagtgggtattcttttcccccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................taagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccctccgcaggagtgggtattcttttttcccaatgcttcgcttcgctacacattgggctgaattaatgcgcccctgcggagctgttacagcggtca.................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1713_TF1714|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1833777,1834264]|488 HSP 1 e-value: 5.0E-59 bit: 230.0 Len: 232 Query Start:37 Query End:268 Subject Strand: NEGATIVE Subject Start: 223 Subject End: 459 ....................................tttccgcgttccggatagttgtt--acgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgtttttt-atgatactacaaagttaaaaacattttttgagaatatgcaaatattttgtctgnnnnnnngcgtc---ctttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................tttccgcgttccggatatttcttttacgctgcgcctccggtgcggtctgtgaggcgcatcgaattgtcgggtggagtgtcggtcgtt-tttccatagccttgcgttttttgatgatactacaaagttagaaacattttttgagaatatgcaaatattatgactgtttttttgcgtcgttctttgcgtcctttgtggtaagatcaccgcaaggatcgcaaaggttacgcaacgcacgca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 60 Query Start:282 Query End:341 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 172 .........................................................................................................................................................................................................................................................................................aaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccctccgcagg......................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................aaaacaactcaaccattaaacaactcaacattttatgccaggcttacagccctccacagg......................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2176_TF2177|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2349246,2349420]|175 HSP 1 e-value: 2.0E-52 bit: 208.0 Len: 162 Query Start:18 Query End:179 Subject Strand: POSITIVE Subject Start: 12 Subject End: 175 .................tttaaacgtttatacttgttttccgcgttccggatagttgtt--acgctgcgcctccggtgcggcctgtgaggcgcagcgaattgtcgggtggagtgtcggtcgttatttccatagccttgcgttttttatgatactacaaagttaaaaacattttttgagaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................tttaaacgtttatacttgttttccgcgttccggatatttcttttacgctgcgcctccgttgcagtttgcgaggcgcatcaaattgtcgggtggagtgtcggttgttatttccatagccttgcgtttttgatgatactacaaagttagaaacattttttgagaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF2165_TF2166|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2341983,2342254]|272 HSP 1 e-value: 2.0E-46 bit: 188.0 Len: 123 Query Start:212 Query End:334 Subject Strand: POSITIVE Subject Start: 8 Subject End: 130 ...................................................................................................................................................................................................................ttgcgaacttggcggtaagatcaccgcaaggaacgcaaaagttacacaaagcacgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggctttcagccct................................................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................ttgcgaacttggaggtaaaataaccgcagggaacgcgaaagttacacaaagcatgcaagtttgtttaagtaaaacatctcgaccattaaataaatcaacattttatatcaggcttacagccct................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 46 Query Start:381 Query End:426 Subject Strand: POSITIVE Subject Start: 167 Subject End: 212 ............................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaacgcaccccttcggagctgttacagtggtca.................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................cattgggctgaattaatgcgcccctgcggagctgttacagcggtca.................................................................................................................................................................................................................................................................................................... Subject: tfor_TF0346_TF0347|hypothetical protein:possible serine protease|POSITIVE:POSITIVE|[367377,367681]|305 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 62 Query Start:654 Query End:715 Subject Strand: POSITIVE Subject Start: 234 Subject End: 295 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttc... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaattcaacgcccgaagggcatcacttttcacttttcgtttctcacttttc... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 88 Subject End: 135 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgcaaacccgatatatttcagccccatcccgtaagggtggggt.............................................................................................................................................. Subject: tfor_TF2166_TF2167|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2342423,2342725]|303 HSP 1 e-value: 3.0E-14 bit: 81.8 Len: 45 Query Start:671 Query End:715 Subject Strand: POSITIVE Subject Start: 251 Subject End: 295 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgcccgaagagcatcacttttcacttttcgtttttcacttttc... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgcccgaagggcatcacttttcacttttcgtttttcacttttc... HSP 2 e-value: 7.0E-9 bit: 63.9 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 88 Subject End: 135 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagccagatatatttcagccccatcccgtaagggtggggt.............................................................................................................................................. Subject: tfor_TF2161_TF2162|conserved hypothetical protein:thermolysin precursor|POSITIVE:POSITIVE|[2338423,2338808]|386 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 169 Subject End: 216 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctgtttcagccccatcccgtaagggtggggt.............................................................................................................................................. HSP 2 e-value: 1.0E-13 bit: 79.8 Len: 48 Query Start:671 Query End:718 Subject Strand: POSITIVE Subject Start: 339 Subject End: 386 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgcccgaagagcatcacttttcacttttcgtttttcacttttctca ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgcccgaagggcatcacttttcacttttagtttttcacttttctca Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 62 Query Start:359 Query End:420 Subject Strand: POSITIVE Subject Start: 550 Subject End: 611 ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacag.......................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctgcacattggactgaattaacgcgccctttcagggctgttacag.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 49 Query Start:529 Query End:577 Subject Strand: POSITIVE Subject Start: 1026 Subject End: 1074 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggta............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccggtatatttcagccccatcccgtaaggatggggta............................................................................................................................................. HSP 3 e-value: 4.0E-7 bit: 58.0 Len: 37 Query Start:360 Query End:396 Subject Strand: POSITIVE Subject Start: 874 Subject End: 910 .......................................................................................................................................................................................................................................................................................................................................................................ccaacgcttcgcttcgctacacattgggctgaattaa.................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................ccaacgcttcgcttcgctgcgcattgggctgaattaa.................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 62 Query Start:359 Query End:420 Subject Strand: POSITIVE Subject Start: 54 Subject End: 115 ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctacacattgggctgaattaacgcaccccttcggagctgttacag.......................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctgcacattgggctgaattaacgcgccctttcagggcttttacag.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-12 bit: 73.8 Len: 49 Query Start:529 Query End:577 Subject Strand: POSITIVE Subject Start: 232 Subject End: 280 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggta............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgacatatttcagccccatcccgcaagggtggggta............................................................................................................................................. Subject: tfor_TF0366_TF0367|hypothetical protein:eukaryotic-like metalloproteinase|POSITIVE:POSITIVE|[383872,384146]|275 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 42 Query Start:654 Query End:695 Subject Strand: POSITIVE Subject Start: 234 Subject End: 275 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagagcatcacttttca....................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagggcatcacttttca....................... HSP 2 e-value: 7.0E-9 bit: 63.9 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 88 Subject End: 135 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagccagatatatttcagccccatcccgtaagggtggggt.............................................................................................................................................. Subject: tfor_TF0362_TF0364|hypothetical protein:ysyl endopeptidase|POSITIVE:POSITIVE|[380260,380534]|275 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 42 Query Start:654 Query End:695 Subject Strand: POSITIVE Subject Start: 234 Subject End: 275 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagagcatcacttttca....................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagggcatcacttttca....................... HSP 2 e-value: 7.0E-9 bit: 63.9 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 88 Subject End: 135 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagccagatatatttcagccccatcccgtaagggtggggt.............................................................................................................................................. Subject: tfor_TF2172_TF2174|hypothetical protein:possible endopeptidase precursor|POSITIVE:POSITIVE|[2346196,2346431]|236 HSP 1 e-value: 8.0E-12 bit: 73.8 Len: 65 Query Start:654 Query End:718 Subject Strand: POSITIVE Subject Start: 172 Subject End: 236 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttcacttttctca .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacatttcaacatccaaacgcccgaagggcatcacttttcacttttagttttttacttttctca HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 48 Query Start:529 Query End:576 Subject Strand: POSITIVE Subject Start: 16 Subject End: 63 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggggt.............................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgcaagccagatatatttcagccccatcccgtaagggtggggt.............................................................................................................................................. Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 5.0E-10 bit: 67.9 Len: 38 Query Start:359 Query End:396 Subject Strand: POSITIVE Subject Start: 236 Subject End: 273 ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctacacattgggctgaattaa.................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................................................................................................cccaacgcttcgcttcgctccacattgggctgaattaa.................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-10 bit: 67.9 Len: 46 Query Start:529 Query End:574 Subject Strand: POSITIVE Subject Start: 394 Subject End: 439 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgttctatttcagccccatcccgcaagggtggg................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaagcccgatatatttcagccccatcccgtaagggtggg................................................................................................................................................ Subject: tfor_TF2477_TF2478|phosphatase:hypothetical protein|POSITIVE:POSITIVE|[2655026,2655514]|489 HSP 1 e-value: 7.0E-6 bit: 54.0 Len: 55 Query Start:654 Query End:708 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 179 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacaactcaacgcccgaagagcatcacttttcacttttcgtttttc.......... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caacaattcaacacctcaatgcccgcagggcttcacgtttcactcttcgtttttc.......... HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 47 Query Start:531 Query End:577 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 280 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggctgaaagcccgttctatttcagccccatcccgcaagggtggggta............................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggctgaaagtccgatctatttcagccccatcccataaggttggggta............................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGUGUUUAAACGUUUAUACUUGUUUUCCGCGUUCCGGAUAGUUGUUACGCUGCGCCUCCGGUGCGGCCUGUGAGGCGCAGCGAAUUGUCGGGUGGAGUGUCGGUCGUUAUUUCCAUAGCCUUGCGUUUUUUAUGAUACUACAAAGUUAAAAACAUUUUUUGAGAAUAUGCAAAUAUUUUGUCUGUUUUUUUGCGUCCUUUGCGAACUUGGCGGUAAGAUCACCGCAAGGAACGCAAAAGUUACACAAAGCACGCAAGUUUGUUUAAGUAAAACAUCUCGACCAUUAAAUAAAUCAACAUUUUAUAUCAGGCUUUCAGCCCUCCGCAGGAGUGGGUAUUCUUUUCCCCCAACGCUUCGCUUCGCUACACAUUGGGCUGAAUUAACGCACCCCUUCGGAGCUGUUACAGUGGUCACAGCUAUCAGUUUUCAAGCAGUCAGCUAUCAGCCAACAGUCAAAACAAUUCAACAACUCAACAAUCAAACAACUCAACGCCCGAAGGGCAUCCAAUACUCGCAGGGCUGAAAGCCCGUUCUAUUUCAGCCCCAUCCCGCAAGGGUGGGGUAAUUUGAUUUCCGCUCUUGUUUUUUGAGGGCUGUAAGCCUGAAUUAAUUUAUUAGCAAUCAGUUUUCAGCAGUCAGCCAACAAUUCAACAACUCAACGCCCGAAGAGCAUCACUUUUCACUUUUCGUUUUUCACUUUUCUCA .(((...(((((................(((((......((((((...(((((((((((((......))).))))))))))(((((((..(((.((.(((.(((((((((((..((((.(((((((.((((.((..(((.....................(((((((.((((.....)))).)))))))((((((((((..........(((((......))))))))).)))))).)))..)).)))).))))))).))))..)))))).......))))).......................((((((((.((((((((.(((((((((((...((..((.(((((..((........))........((((((((.((......((((((((.(((((.((....)).))))).....(((((...((.((..((.....))..)).)).)))))..................................))))))))...............((((.....))))....)).))))))))...(((....)))))))).))...))..))))))))))).....)))))))).))))))))..........................))).)).))).))))))).)))))).)))))..((((((.....))))))......)))))..)))........ (-216.71) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGAAAAGUGAAAAACGAAAAGUGAAAAGUGAUGCUCUUCGGGCGUUGAGUUGUUGAAUUGUUGGCUGACUGCUGAAAACUGAUUGCUAAUAAAUUAAUUCAGGCUUACAGCCCUCAAAAAACAAGAGCGGAAAUCAAAUUACCCCACCCUUGCGGGAUGGGGCUGAAAUAGAACGGGCUUUCAGCCCUGCGAGUAUUGGAUGCCCUUCGGGCGUUGAGUUGUUUGAUUGUUGAGUUGUUGAAUUGUUUUGACUGUUGGCUGAUAGCUGACUGCUUGAAAACUGAUAGCUGUGACCACUGUAACAGCUCCGAAGGGGUGCGUUAAUUCAGCCCAAUGUGUAGCGAAGCGAAGCGUUGGGGGAAAAGAAUACCCACUCCUGCGGAGGGCUGAAAGCCUGAUAUAAAAUGUUGAUUUAUUUAAUGGUCGAGAUGUUUUACUUAAACAAACUUGCGUGCUUUGUGUAACUUUUGCGUUCCUUGCGGUGAUCUUACCGCCAAGUUCGCAAAGGACGCAAAAAAACAGACAAAAUAUUUGCAUAUUCUCAAAAAAUGUUUUUAACUUUGUAGUAUCAUAAAAAACGCAAGGCUAUGGAAAUAACGACCGACACUCCACCCGACAAUUCGCUGCGCCUCACAGGCCGCACCGGAGGCGCAGCGUAACAACUAUCCGGAACGCGGAAAACAAGUAUAAACGUUUAAACACG ........(((..(((((.............(((((.(....)))))).(((((((((((((((((.((....................(((((((((((((((((((.((((((((.........((((((........(((((((((((....))).))))).))).........((((.((((((..((....(((.(((((((...))))))).))).................((..((....))..)).)).)))))).))))..))))))..........((((((.((....)).)))))).((.(((((((.((...(((..((((((((...((...))...)))))))).)))......)).))))))).)))))))))).))))))))........)))))))))))...((((((...(((((.....)))))..(((((((..(((((((..((((((((...(((((((((....))))).))))..)))))))))))))))...(((((.(((((((((.............)))))))))....))))).............))))))).............))))))......)).))))))))))((((((((((...((.....)).))))))))))..))))))).((((.....)))).............)))))...))). (-235.62) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1046 100 51 199 150 tfor:TF1714|5end_hypothetical_protein_1834125..1834355_POSITIVE 908 380 331 91 41 tfor:TF1716|5end_hypothetical_protein_1837442..1837672_POSITIVE 878 560 516 215 171 tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE 878 560 516 215 171 tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE 802 560 516 201 157 tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE 732 390 345 113 68 tfor:TF0538|5end_hypothetical_protein_566891..567121_POSITIVE 732 390 345 106 61 tfor:TF0539|5end_hypothetical_protein_566884..567114_POSITIVE 731 560 516 46 3 tfor:TF2840|5end_hypothetical_protein_3031060..3031290_POSITIVE 693 410 361 200 150 tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE 689 379 334 181 133 tfor:TF1406|5end_transposase_1481758..1481988_POSITIVE 688 380 332 96 46 tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE 665 570 524 60 14 tfor:TF2547|5end_hypothetical_protein_2730664..2730894_POSITIVE 656 359 311 183 137 tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE 645 358 311 167 121 tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE 594 358 311 84 38 tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE 594 410 361 226 177 tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE 594 358 311 219 173 tfor:TF0823|5end_conserved_hypothetical_protein_880660..880890_POSITIVE 583 400 351 176 130 tfor:TF2517|5end_hypothetical_protein_2695089..2695319_POSITIVE 577 236 191 69 18 tfor:TF1592|5end_hypothetical_protein_1708325..1708555_POSITIVE 577 236 191 69 18 tfor:TF1590|5end_hypothetical_protein_1705811..1706041_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 820 668 621 53 6 tfor:TF1715|3end_thermolysin;_zinc_metalloprotease_1837202..1837352_POSITIVE 734 400 351 82 33 tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE 633 690 641 77 14 tfor:TF1657|3end_lauroyl/myristoyl_acyltransferase_1773407..1773557_POSITIVE 594 410 361 80 31 tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE 587 360 311 143 93 tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE 574 100 53 62 1 tfor:TF0358|3end_hypothetical_protein_376304..376454_POSITIVE 568 665 621 109 61 tfor:TF0448|3end_hypothetical_protein_467911..468061_POSITIVE 562 349 306 132 88 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE 553 400 351 53 4 tfor:TF0533|3end_hypothetical_protein_559519..559669_POSITIVE 551 360 311 136 87 tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE 543 358 311 114 67 tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE 539 100 51 67 3 tfor:TF2170|3end_hypothetical_protein_2345070..2345220_POSITIVE 526 410 361 118 69 tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE 510 104 64 145 102 tfor:TF0991|3end_probable_NAD(FAD)-dependent_dehydrogenase_1048334..1048484_POSITIVE 508 82 48 35 1 tfor:TF0348|3end_hypothetical_protein_370447..370597_POSITIVE 506 100 51 68 6 tfor:TF0365|3end_hypothetical_protein_383152..383302_POSITIVE 505 680 631 95 38 tfor:TF1816|3end_hypothetical_protein_1957974..1958124_POSITIVE 505 680 631 112 55 tfor:TF1817|3end_hypothetical_protein_1957991..1958141_POSITIVE 504 96 51 57 4 tfor:TF0360|3end_hypothetical_protein_379538..379688_POSITIVE 490 100 51 68 3 tfor:TF2176|3end_hypothetical_protein_2349185..2349335_POSITIVE