Origin IGS: taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttatgcattataatcatttaacccgtgagcatagatatgcaatttatctgggatcagaagaaggcaaaaggcatgaagccattgctcggcagataaatgttcacccctcgtctatatgtgttaaaacatgctgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaaggaggcattgtctcttttgataaatgaagattggtctcccaaacaaatctccggatacctttcactaaagtctgaacacatctcacatgaaacgatatacaaaaggataaggaggcatacgcctcatgacagaaagaggccattgagaatgaaaacaaacttaaacttatcaggcaatacataccaaaggtaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatctctcctctccccaattttactcattcttacagattaatcgagtaggaggaaaatgacgtaggttgtttccctcctactgtcatttcccgacggcagagtcaatcggcaagtacaataaatacaaaactaaattgaagaacttctttttttgagtagaaaagtttattttttcccttggtcttctgttgattttgtattgtatctccttaataaaatagatgggcacatctctaaaatcggtacctttggtatgtattgcctgataagtttaagtttgttttcattctcaatggcctctttctgtcatgaggcgtatgcctccttatccttttgtatatcgtttcatgtgagatgtgttcagactttagtgaaaggtatccggagatttgtttgggagaccaatcttcatttatcaaaagagacaatgcctccttaaggaaattggggcaatgctcttgttctccagcatacattccttgcagatgtccgcattttcctgtaccatacgccaactacaacacaaaaaaaagattgatttacagcatgttttaacacatatagacgaggggtgaacatttatctgccgagcaatggcttcatgccttttgccttcttctgatcccagataaattgcatatctatgctcacgggttaaatgattataatgcataacaacacaaaattacttcatccattcggagaaacggaggcttcccccttatttagggtattgccaaatgactcttgtcagactttcctccctccgtcctttccgctacaccagaaagacggaggaaattgcacttctatcttgaatccataaacctgttatatcacttccgcaaaagagcggagtgctttaagaaaaagacgttacatttttaaaaaaacacgtgtgtttttccggaaaatgtagcgtcttttttatgataaccatgtgaggacaaaaagtactgccggctatccgagcatctacatcacaccgtcctgaaaataacaaaggctatccgtcaagttctcactttccggatagccccttgttataaagcgattaagcttttaccgtgatta Mask Tandem Repeat Region ================================================ taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttatgcattataatcatttaacccgtgagcatagatatgcaatttatctgggatcagaagaaggcaaaaggcatgaagccattgctcggcagataaatgttcacccctcgtctatatgtgttaaaacatgctgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaaggaggcattgtctcttttgataaatgaagattggtctcccaaacaaatctccggatacctttcactaaagtctgaacacatctcacatgaaacgatatacaaaaggataaggaggcatacgcctcatgacagaaagaggccattgagaatgaaaacaaacttaaacttatcaggcaatacataccaaaggtaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Find is-nt database================================================ Query_seq: TF0199:TF0200|TF0199:TF0200:conserved hypothetical protein:2-nitropropane dioxygenase:->->:224125..225200 1076 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttatgcattataatcatttaacccgtgagcatagatatgcaatttatctgggatcagaagaaggcaaaaggcatgaagccattgctcggcagataaatgttcacccctcgtctatatgtgttaaaacatgctgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaaggaggcattgtctcttttgataaatgaagattggtctcccaaacaaatctccggatacctttcactaaagtctgaacacatctcacatgaaacgatatacaaaaggataaggaggcatacgcctcatgacagaaagaggccattgagaatgaaaacaaacttaaacttatcaggcaatacataccaaaggtaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0199:TF0200|TF0199:TF0200:conserved hypothetical protein:2-nitropropane dioxygenase:->->:224125..225200 1076 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttatgcattataatcatttaacccgtgagcatagatatgcaatttatctgggatcagaagaaggcaaaaggcatgaagccattgctcggcagataaatgttcacccctcgtctatatgtgttaaaacatgctgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaaggaggcattgtctcttttgataaatgaagattggtctcccaaacaaatctccggatacctttcactaaagtctgaacacatctcacatgaaacgatatacaaaaggataaggaggcatacgcctcatgacagaaagaggccattgagaatgaaaacaaacttaaacttatcaggcaatacataccaaaggtaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 27 Min: 402 Max: 829 Len: 428 Subject: gi|68540465|ref|ZP_00580216.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68540523|ref|ZP_00580274.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68540720|ref|ZP_00580470.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68540996|ref|ZP_00580744.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68541811|ref|ZP_00581551.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68541812|ref|ZP_00581552.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68541970|ref|ZP_00581708.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542166|ref|ZP_00581901.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542202|ref|ZP_00581937.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542459|ref|ZP_00582189.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542669|ref|ZP_00582395.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542676|ref|ZP_00582402.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542703|ref|ZP_00582428.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542731|ref|ZP_00582456.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68543602|ref|ZP_00583301.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68543768|ref|ZP_00583460.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68543823|ref|ZP_00583512.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68543850|ref|ZP_00583538.1| Integrase, catalytic region [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K L C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68544308|ref|ZP_00583965.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68544449|ref|ZP_00584096.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68544624|ref|ZP_00584251.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|113948453|ref|ZP_01434112.1| Integrase, catalytic region [Shewanella baltica OS195] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I V L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68542231|ref|ZP_00581966.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 2.0E-7 bit: 45.1 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S H E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|68543214|ref|ZP_00582926.1| Helix-turn-helix, Fis-type [Shewanella baltica OS155] HSP 1 e-value: 8.0E-7 bit: 42.7 Len: 189 Query Start:641 Query End:829 Subject Strand: null Subject Start: 78 Subject End: 136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S I I L L L Q L D W S P E Q I S Q V L R L V K E P V S Y E W I Y R Y I A R - - - - D K R R G G K L Y R H L R Q G H K R Y R R ....................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-7 bit: 28.5 Len: 129 Query Start:402 Query End:530 Subject Strand: null Subject Start: 1 Subject End: 45 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C - - V K T C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................. M N Y Q Q L T E A R R Y Q I S V L L E Q G F S I A H I A K C I D C H R S S V Y R E V K R C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: gi|60683316|ref|YP_213460.1| putative transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 1.0E-6 bit: 50.8 Len: 186 Query Start:644 Query End:829 Subject Strand: null Subject Start: 81 Subject End: 156 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R - - - - - - - - - - - - - - R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A I D L L K H E Q W S P E Q I S G Y L A R N G V R I S H E T I Y A I I R K D K Y I E R G S L Y K Y C R H Q L K H R R R P V G K R T M I P D R A S I H Q R ....................................................................................................................................................................................................................................................... Subject: gi|60681629|ref|YP_211773.1| putative IS element [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 3.0E-6 bit: 49.7 Len: 186 Query Start:644 Query End:829 Subject Strand: null Subject Start: 81 Subject End: 156 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R - - - - - - - - - - - - - - R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A I D L L K H E Q W S P E Q I S G Y L A R N G V R I S H E T I Y A I I R K D K Y I E R G S L Y K Y C R H Q L K H R R R P V G K H T M I P D R A S I H Q R ....................................................................................................................................................................................................................................................... Subject: UniRef90_Q5LDG6 Cluster: Putative IS element; n=2; Bacteroides fragilis NCTC 9343|Rep: Putative IS element - Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) HSP 1 e-value: 3.0E-6 bit: 49.7 Len: 186 Query Start:644 Query End:829 Subject Strand: null Subject Start: 81 Subject End: 156 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y K R I R - - - - - - - - - - - - - - R H T P H D R K R P L R M K T N L N L S G N T Y Q R ....................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A I D L L K H E Q W S P E Q I S G Y L A R N G V R I S H E T I Y A I I R K D K Y I E R G S L Y K Y C R H Q L K H R R R P V G K H T M I P D R A S I H Q R ....................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: TF0199:TF0200|TF0199:TF0200:conserved hypothetical protein:2-nitropropane dioxygenase:->->:224125..225200 1076 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 72 End: 209 ....................................................................... M L F S G R C D V D A R I A G S T F C P H M V I I K K T L H F P E K H T C F F K N V T S F S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 496 End: 636 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F T P R L Y V L K H A V N Q S F F C V V V G V W Y R K M R T S A R N V C W R T R A L P Q F P ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 402 End: 656 ................................................................................................................................................................................................................................................................................................................................................................................................................. M H Y N H L T R E H R Y A I Y L G S E E G K R H E A I A R Q I N V H P S S I C V K T C C K S I F F L C C S W R M V Q E N .................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 560 End: 838 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A Y G T G K C G H L Q G M Y A G E Q E H C P N F L K E A L S L L I N E D W S P K Q I S G Y L S L K S E H I S H E T I Y .............................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 781 End: 906 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M E N E N K L K L I R Q Y I P K V P I L E M C P S I L L R R Y N T K S T E D Q G K K .......................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 875 End: 970 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q N Q Q K T K G K N K L F Y S K K E V L Q F S F V F I V L A D .......................................................................................................... Protein_Len: 58 Strand: + Start: 816 End: 989 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H T K G T D F R D V P I Y F I K E I Q Y K I N R R P R E K I N F S T Q K K K F F N L V L Y L L Y L P I D S A V G K ....................................................................................... Protein_Len: 60 Strand: - Start: 639 End: 941 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. E H C F S A M S F S F L S L S I L C Y M G F T G I K S I H G D I K N L L Y L V F D V S S W P F F Y V K R S L F L L E E M ....................................................................................................................................... Protein_Len: 60 Strand: - Start: 523 End: 747 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P V P F H P C R C P I Y A P S C S C Q G L K R L S A N D R K I F S S Q D G L C I E P Y R E S F D S C M E C S V I Y L L M ......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 503 End: 685 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E D I H T L V H Q L D I K K K H Q L Q R I T C S F A S M Q L S H I S S F L L M A G I E K L L C Q R K Q Y I F I P R G F M ....................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: - Start: 260 End: 403 ................................................................................................................................................................................................................................................................... S L L A I E E T K R T Y R F P R L S S L R V L T M Q C Y G L Y P P L R R K E S H I F Y N Q T T M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 55 Strand: - Start: 252 End: 416 ........................................................................................................................................................................................................................................................... P N L I S T C N G G D K Q H L P F S P P L F T Q C S D N P L V R F L P S A E T E G F P H L L K T N N H M I I M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 190 End: 327 ............................................................................................................................................................................................. F H L T K K K F C E A R K R F H Y L L N I S E L Y F H L K R R R E P T A S L V S P P F D S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: - Start: 29 End: 118 ............................ L L P S D P F H S S S P Y G K N N E P R H S T S A R I A P M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 567 End: 596 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATGTCCGCATTTTCCTGTACCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -12.5 Tail_Score: -4.67697 Start: 37 End: 70 Full_Region: CGCTTTATAACAAGG GGCTATCCGGAAAGT GAGA ACTTGACGGATAGCC TTTGTTATTTTCAGG ....................................GGCTATCCGGAAAGTGAGAACTTGACGGATAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 83 HP_score: -6.5 Tail_Score: -5.06414 Start: 152 End: 202 Full_Region: GGTTATCATAAAAAA GACGCTACATTTTCCGGAAAAACA CACG TGTTTTTTTAAAAATGTAACGTC TTTTTCTTAAAGCAC .......................................................................................................................................................GACGCTACATTTTCCGGAAAAACACACGTGTTTTTTTAAAAATGTAACGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 87 HP_score: -6.5 Tail_Score: -5.31275 Start: 152 End: 202 Full_Region: gtgctttaagaaaaa gacgttacatttttaaaaaaaca cgtg tgtttttccggaaaatgtagcgtc ttttttatgataacc .......................................................................................................................................................gacgttacatttttaaaaaaacacgtgtgtttttccggaaaatgtagcgtc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -2.5 Tail_Score: -5.08015 Start: 911 End: 929 Full_Region: taaattgaagaactt ctttttt tgagt agaaaag tttattttttccctt ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttttttgagtagaaaag................................................................................................................................................... TransTerm Strand: - Conf: 82 HP_score: -12.0 Tail_Score: -3.00525 Start: 995 End: 1030 Full_Region: ttacagattaatcga gtaggaggaaaatgac gtag gttgtttccctcctac tgtcatttcccgacg ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtaggaggaaaatgacgtaggttgtttccctcctac.............................................. Find igs database================================================ Query_seq: TF0199:TF0200|TF0199:TF0200:conserved hypothetical protein:2-nitropropane dioxygenase:->->:224125..225200 1076 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtaaatcaatcttttttttgtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca Intra-Species Hit: Count: 1 Min: 1 Max: 1076 Len: 1076 Subject: tfor_TF0199_TF0200|conserved hypothetical protein:2-nitropropane dioxygenase|POSITIVE:POSITIVE|[224125,225200]|1076 HSP 1 e-value: 0.0 bit: 753.0 Len: 401 Query Start:1 Query End:401 Subject Strand: POSITIVE Subject Start: 1 Subject End: 401 taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgnnnnnnnaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgtt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcacggtaaaagcttaatcgctttataacaaggggctatccggaaagtgagaacttgacggatagcctttgttattttcaggacggtgtgatgtagatgctcggatagccggcagtactttttgtcctcacatggttatcataaaaaagacgctacattttccggaaaaacacacgtgtttttttaaaaatgtaacgtctttttcttaaagcactccgctcttttgcggaagtgatataacaggtttatggattcaagatagaagtgcaatttcctccgtctttctggtgtagcggaaaggacggagggaggaaagtctgacaagagtcatttggcaataccctaaataagggggaagcctccgtttctccgaatggatgaagtaattttgtgttgtt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-124 bit: 448.0 Len: 247 Query Start:830 Query End:1076 Subject Strand: POSITIVE Subject Start: 830 Subject End: 1076 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcnnnnnnngaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taccgattttagagatgtgcccatctattttattaaggagatacaatacaaaatcaacagaagaccaagggaaaaaataaacttttctactcaaaaaaagaagttcttcaatttagttttgtatttattgtacttgccgattgactctgccgtcgggaaatgacagtaggagggaaacaacctacgtcattttcctcctactcgattaatctgtaagaatgagtaaaattggggagaggagagatca HSP 3 e-value: 1.0E-42 bit: 176.0 Len: 89 Query Start:551 Query End:639 Subject Strand: POSITIVE Subject Start: 551 Subject End: 639 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgttgtagttggcgtatggtacaggaaaatgcggacatctgcaaggaatgtatgctggagaacaagagcattgccccaatttccttaa..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCACGGUAAAAGCUUAAUCGCUUUAUAACAAGGGGCUAUCCGGAAAGUGAGAACUUGACGGAUAGCCUUUGUUAUUUUCAGGACGGUGUGAUGUAGAUGCUCGGAUAGCCGGCAGUACUUUUUGUCCUCACAUGGUUAUCAUAAAAAAGACGCUACAUUUUCCGGAAAAACACACGUGUUUUUUUAAAAAUGUAACGUCUUUUUCUUAAAGCACUCCGCUCUUUUGCGGAAGUGAUAUAACAGGUUUAUGGAUUCAAGAUAGAAGUGCAAUUUCCUCCGUCUUUCUGGUGUAGCGGAAAGGACGGAGGGAGGAAAGUCUGACAAGAGUCAUUUGGCAAUACCCUAAAUAAGGGGGAAGCCUCCGUUUCUCCGAAUGGAUGAAGUAAUUUUGUGUUGUUAUGCAUUAUAAUCAUUUAACCCGUGAGCAUAGAUAUGCAAUUUAUCUGGGAUCAGAAGAAGGCAAAAGGCAUGAAGCCAUUGCUCGGCAGAUAAAUGUUCACCCCUCGUCUAUAUGUGUUAAAACAUGCUGUAAAUCAAUCUUUUUUUUGUGUUGUAGUUGGCGUAUGGUACAGGAAAAUGCGGACAUCUGCAAGGAAUGUAUGCUGGAGAACAAGAGCAUUGCCCCAAUUUCCUUAAGGAGGCAUUGUCUCUUUUGAUAAAUGAAGAUUGGUCUCCCAAACAAAUCUCCGGAUACCUUUCACUAAAGUCUGAACACAUCUCACAUGAAACGAUAUACAAAAGGAUAAGGAGGCAUACGCCUCAUGACAGAAAGAGGCCAUUGAGAAUGAAAACAAACUUAAACUUAUCAGGCAAUACAUACCAAAGGUACCGAUUUUAGAGAUGUGCCCAUCUAUUUUAUUAAGGAGAUACAAUACAAAAUCAACAGAAGACCAAGGGAAAAAAUAAACUUUUCUACUCAAAAAAAGAAGUUCUUCAAUUUAGUUUUGUAUUUAUUGUACUUGCCGAUUGACUCUGCCGUCGGGAAAUGACAGUAGGAGGGAAACAACCUACGUCAUUUUCCUCCUACUCGAUUAAUCUGUAAGAAUGAGUAAAAUUGGGGAGAGGAGAGAUCA ..((((((.(.(((((......))))).(((((((((.(((((((..((((....))))..))))))))))))))))..........).)))))).....(((.(((....))))))...((((((.((((((....(((((....(((((((((.((((((((..(((((((((....))))))))).)))))))).))))))))).......((((((((......)))).))))..)))))...(((((..((((...(((((.......(((((((((((((((((......)))))).)))))))))))...((((.(((.(((((((.(((((((...(((.(((((.((((((((....)))))))).((((((((..((((.((((..(((((...((((....(((........((((((((..((.(((......((((....))))....(((((..(((.....))).)))))..))).))..)))))))).((((.....(((((......)))))((((......((((((((..((((((((...(((.(.(((((.((((....(((((....))))).((((.((((.(((((((..(((((((.((((((...........)).)))).)).)))))............(.((((....)))).)...))))))))))).)))).......)))).)).)))).).))....)))))))).))))))))...(((((....)))))...))))...))))....))).))))..)))))...)))).))))..(((...((((..(.(((((....))))).)..)))))))))))))))))))).))).((((.((((((((((.((..(((((.(...((((((.......))))))..((.......)).).)))))...)).))))))))))))))....))))))).)))))))...)))((((((((((.(((((..(....)..)))))))))))))))........))))..)))))..))))..)))))..))))))..)))))).... (-327.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUCUCUCCUCUCCCCAAUUUUACUCAUUCUUACAGAUUAAUCGAGUAGGAGGAAAAUGACGUAGGUUGUUUCCCUCCUACUGUCAUUUCCCGACGGCAGAGUCAAUCGGCAAGUACAAUAAAUACAAAACUAAAUUGAAGAACUUCUUUUUUUGAGUAGAAAAGUUUAUUUUUUCCCUUGGUCUUCUGUUGAUUUUGUAUUGUAUCUCCUUAAUAAAAUAGAUGGGCACAUCUCUAAAAUCGGUACCUUUGGUAUGUAUUGCCUGAUAAGUUUAAGUUUGUUUUCAUUCUCAAUGGCCUCUUUCUGUCAUGAGGCGUAUGCCUCCUUAUCCUUUUGUAUAUCGUUUCAUGUGAGAUGUGUUCAGACUUUAGUGAAAGGUAUCCGGAGAUUUGUUUGGGAGACCAAUCUUCAUUUAUCAAAAGAGACAAUGCCUCCUUAAGGAAAUUGGGGCAAUGCUCUUGUUCUCCAGCAUACAUUCCUUGCAGAUGUCCGCAUUUUCCUGUACCAUACGCCAACUACAACACAAAAAAAAGAUUGAUUUACAGCAUGUUUUAACACAUAUAGACGAGGGGUGAACAUUUAUCUGCCGAGCAAUGGCUUCAUGCCUUUUGCCUUCUUCUGAUCCCAGAUAAAUUGCAUAUCUAUGCUCACGGGUUAAAUGAUUAUAAUGCAUAACAACACAAAAUUACUUCAUCCAUUCGGAGAAACGGAGGCUUCCCCCUUAUUUAGGGUAUUGCCAAAUGACUCUUGUCAGACUUUCCUCCCUCCGUCCUUUCCGCUACACCAGAAAGACGGAGGAAAUUGCACUUCUAUCUUGAAUCCAUAAACCUGUUAUAUCACUUCCGCAAAAGAGCGGAGUGCUUUAAGAAAAAGACGUUACAUUUUUAAAAAAACACGUGUGUUUUUCCGGAAAAUGUAGCGUCUUUUUUAUGAUAACCAUGUGAGGACAAAAAGUACUGCCGGCUAUCCGAGCAUCUACAUCACACCGUCCUGAAAAUAACAAAGGCUAUCCGUCAAGUUCUCACUUUCCGGAUAGCCCCUUGUUAUAAAGCGAUUAAGCUUUUACCGUGAUUA .((((((..((((.((...((((((((.................))))))))((.((((((((((((..(....)..))))).))))))).))...)).))))....((((((.((((....(((((((((.(((...(((((.((.........(((((((....)))))))........)))))))..))).))))))))).....((((((.....(((((((.(((...........(((((......((((.....)))).(((((((...((..((....))..))...(.((((((((((((((((((((((((((..............))))).)))))))))....(((((((.((((....(((((.(((((..(((((.....((((....))))..............(((((.((.((((.((...........)))))).)))))))..))))).((..(((((.......)))))..))........))))).................(((........))).))))).....)))).)))))))))))).))))))).)..))))))).)))))((((.(((.....)))..)))).....((((....)))).....))).)))))))......(((((....(((.....((((.................(((.(((....))))))..((((((....((((.....))))....)))...((((....)))).....)))..((((((((.((((.(......).))))))))))))....)))).....)))...)))))........(((((..((((.((((......))))))))......((((((((((((((((((((..(((((((....)))))))...))))))))))))))))))))...)))))....))))))......))))))))))......))).)))...(((((............(((((((.(((((((((..((((....))))..)))))))))..)))))))(((((......)))))....))))).. (-298.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 452 320 276 169 118 tfor:TF3097|5end_conserved_hypothetical_protein_3328661..3328891_POSITIVE 440 787 743 231 193 tfor:TF2760|5end_MarR__family_transcriptional_regulator_2945019..2945249_POSITIVE 405 1005 961 52 9 tfor:TF0976|5end_outer_membrane_receptor,_Ton-linked_1024482..1024712_POSITIVE 394 630 581 226 176 tfor:TF0038|5end_conserved_hypothetical_protein_39907..40137_POSITIVE 387 1007 962 101 46 tfor:TF1856|5end_conserved_hypothetical_protein_2009969..2010199_POSITIVE 386 116 77 50 5 tfor:TF2849|5end_histidinol-phosphate_transaminase_3037288..3037518_POSITIVE 385 1029 994 146 114 tfor:TF2197|5end_conserved_hypothetical_protein_2372402..2372632_POSITIVE 376 610 561 202 157 tfor:TF1244|5end_hypothetical_protein_1328554..1328784_POSITIVE 374 74 32 192 144 tfor:TF2066|5end_nucleotidyltransferase_family_protein_2231835..2232065_POSITIVE 372 130 83 68 20 tfor:TF3139|5end_Na+-translocating_NADH-quinone_reductase,_subunit_C_3372581..3372811_POSITIVE 371 129 82 189 132 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 371 597 551 68 35 tfor:TF1464|5end_conserved_hypothetical_protein_1553467..1553697_POSITIVE 370 118 75 144 88 tfor:TF0819|5end_phosphoglycerate_mutase_878447..878677_POSITIVE 366 320 279 219 178 tfor:TF2909|5end_GTP-binding_protein,_possible_GTP1/OBG_family_3104644..3104874_POSITIVE 366 987 944 201 150 tfor:TF1611|5end_conserved_hypothetical_protein;_possible_glycosyl_transferase_1729620..1729850_POSITIVE 363 316 278 54 8 tfor:TF0663|5end_conserved_hypothetical_protein_708450..708680_POSITIVE 362 608 561 85 22 tfor:TF2914|5end_hypothetical_protein_3109345..3109575_POSITIVE 361 790 742 195 138 tfor:TF1585|5end_hypothetical_protein_1690369..1690599_POSITIVE 361 790 742 71 14 tfor:TF1584|5end_hypothetical_protein_1690245..1690475_POSITIVE 361 790 742 71 14 tfor:TF1582|5end_hypothetical_protein_1690121..1690351_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 452 320 276 142 91 tfor:TF3096|3end_conserved_hypothetical_protein_3328714..3328864_POSITIVE 427 78 31 63 16 tfor:TF0199|3end_conserved_hypothetical_protein_224064..224214_POSITIVE 405 1005 961 52 9 tfor:TF0974|3end_hypothetical_protein_1024562..1024712_POSITIVE 386 116 77 71 26 tfor:TF2848|3end_cobalamin_biosynthesis_protein_3037389..3037539_POSITIVE 372 130 83 61 13 tfor:TF3138|3end_Na+-translocating_quinone_reductase,_subunit_D_3372654..3372804_POSITIVE 370 118 75 134 78 tfor:TF0818|3end_bifunctional_protein:__aspartokinase_I;_homoserine_dehydrogenase_878517..878667_POSITIVE 363 316 278 78 32 tfor:TF0662|3end_hypothetical_protein_708554..708704_POSITIVE 361 790 742 93 36 tfor:TF1583|3end_conserved_hypothetical_protein;_possible_endonuclease_1690223..1690373_POSITIVE 360 489 445 105 54 tfor:TF0991|3end_probable_NAD(FAD)-dependent_dehydrogenase_1048334..1048484_POSITIVE 354 820 771 127 82 tfor:TF0172|3end_transposase_element_185151..185301_POSITIVE 352 585 548 82 40 tfor:TF1336|3end_hypothetical_protein_1419575..1419725_POSITIVE 351 645 601 41 5 tfor:TF2210|3end_hypothetical_protein_2384439..2384589_POSITIVE 351 325 281 81 46 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 349 311 271 53 17 tfor:TF2511|3end_RNA_binding_protein_2690232..2690382_POSITIVE 349 120 72 71 16 tfor:TF0235|3end_hypothetical_protein_261849..261999_POSITIVE 347 1004 963 79 40 tfor:TF3157|3end_sodium/solute_symporter_3393787..3393937_POSITIVE 347 74 33 139 92 tfor:TF0684|3end_conserved_hypothetical_protein_730564..730714_POSITIVE 346 586 542 61 17 tfor:TF2018|3end_hypothetical_protein_2175315..2175465_POSITIVE 346 123 82 60 14 tfor:TF0292|3end_conserved_hypothetical_protein_320640..320790_POSITIVE 345 489 446 143 96 tfor:TF2853|3end_2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase_3040725..3040875_POSITIVE