Origin IGS:
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
taactaaaaatgctgacacaacctttatccgtatatattaaggatgtgcacaaacgaaatgtttgggtactccctcatacatatgctcccctcctactcttctctgcttaaacccacattcggcaatagaacaaatacaaataaggatgaatttaattcagaccttcagcccttataaaccccgcagaggcggtgatgcggtgagttgttgacatgttgaattgttgagttgttgagttgttggctgattgctgaacactgaccgctaacgattatatcgggcttgcagccctttcgggtaatggttatgcgtgttacacgccgaatcatgtacccggcatgaccattgacaattaaccattaataaatagggggcgagatcattcagcccaatgcgaagcgttgggaaaaaaggcatcgcgtctcggcggagggctgtaagcctgacgtaacccttgtcgtacattcgtacgtacattattaatgtaatggtaaacgcccaacagtgtatcgcgtaatttggggtaaattgccctccaaaactccataaaggatagaattgtaaatatctcttgtttttaacacataatatttgcatttacaagaagataatttctatatttgtaaaatttaatttacattaatatcataaatc

Mask Tandem Repeat Region ================================================
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta

Find is-nt database================================================
Query_seq: TF0179:TF0180|TF0179:TF0180:pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase:->->:190752..191406 655
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TF0179:TF0180|TF0179:TF0180:pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase:->->:190752..191406 655
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TF0179:TF0180|TF0179:TF0180:pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase:->->:190752..191406 655
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Predict ORF larger than 30AA ================================================
Protein_Len: 34	Strand: +	Start: 71	End: 172
...................................................................... M  L  K  T  R  D  I  Y  N  S  I  L  Y  G  V  L  E  G  N  L  P  Q  I  T  R  Y  T  V  G  R  L  P  L  H ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 87	End: 272
...................................................................................... M  F  T  I  L  S  F  M  E  F  W  R  A  I  Y  P  K  L  R  D  T  L  L  G  V  Y  H  Y  I  N  N  V  R  T  N  V  R  Q  G  L  R  Q  A  Y  S  P  P  P  R  R  D  A  F  F  P  N  A  S  H  W ...............................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 58	End: 387
......................................................... M  Q  I  L  C  V  K  N  K  R  Y  L  Q  F  Y  P  L  W  S  F  G  G  Q  F  T  P  N  Y  A  I  H  C  W  A  F  T  I  T  L  I  M  Y  V  R  M  Y  D  K  G  Y  V  R  L  T  A  L  R  R  D  A ............................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 302	End: 487
............................................................................................................................................................................................................................................................................................................. M  V  N  G  H  A  G  Y  M  I  R  R  V  T  R  I  T  I  T  R  K  G  C  K  P  D  I  I  V  S  G  Q  C  S  A  I  S  Q  Q  L  N  N  S  T  I  Q  H  V  N  N  S  P  H  H  R  L  C  G  V  Y ........................................................................................................................................................................
Protein_Len: 39	Strand: +	Start: 499	End: 615
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M  K  F  I  L  I  C  I  C  S  I  A  E  C  G  F  K  Q  R  R  V  G  G  E  H  M  Y  E  G  V  P  K  H  F  V  C  A  H  P ........................................
Protein_Len: 33	Strand: -	Start: 548	End: 646
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A  S  F  L  L  L  P  A  Y  T  H  P  L  V  W  V  N  R  K  H  V  D  K  I  Y  V  S  L  P  Q  T  L  M .........
Protein_Len: 47	Strand: -	Start: 481	End: 621
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L  P  Q  L  D  S  N  F  E  D  K  N  T  N  T  R  N  G  F  T  P  K  L  L  S  S  Y  S  P  L  M  H  I  L  S  Y  G  F  M  E  N  T  C  M  R  L  M ..................................
Protein_Len: 49	Strand: -	Start: 447	End: 593
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. C  S  V  A  D  G  G  R  R  P  K  Y  P  S  F  T  Q  I  L  N  M  R  I  Q  I  Q  E  I  A  S  H  P  N  L  C  L  L  T  P  P  S  C  I  Y  S  P  T  G  M ..............................................................
Protein_Len: 32	Strand: -	Start: 302	End: 397
............................................................................................................................................................................................................................................................................................................. N  D  I  T  M  G  P  V  H  N  P  T  Y  C  A  Y  G  N  G  S  L  A  A  L  G  I  Y  D  N  A  T  M ..................................................................................................................................................................................................................................................................
Protein_Len: 38	Strand: -	Start: 175	End: 288
.............................................................................................................................................................................. Y  H  V  Y  S  H  V  V  L  T  V  D  P  K  C  G  E  A  S  V  R  H  R  K  E  W  R  K  A  N  P  Q  I  I  E  G  G  M ...............................................................................................................................................................................................................................................................................................................................................................................

gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 82	Start: 6	End: 35
.....TTTGTAAAATTTAATTTACATTAATATCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 76	HP_score: -9.1	Tail_Score: -3.6284	Start: 364	End: 376	Full_Region: gctaacgattatatc gggct tgc agccc tttcgggtaatggtt
...........................................................................................................................................................................................................................................................................................................................................................................gggcttgcagccc.......................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 46	HP_score: -2.6	Tail_Score: -3.322	Start: 582	End: 614	Full_Region: GGAGCATATGTATGA GGGAGTACCCAAAC ATTTC GTTTGTGCACATCC TTAATATATACGGAT
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGTACCCAAACATTTCGTTTGTGCACATCC.........................................

Find igs database================================================
Query_seq: TF0179:TF0180|TF0179:TF0180:pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase:->->:190752..191406 655
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagccaacaactcaacaactcaacaattcaacatgtcaacaactcaccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
Intra-Species Hit: Count: 19	Min: 1	Max: 655	Len: 655
Subject: tfor_TF0179_TF0180|pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase|POSITIVE:POSITIVE|[190752,191406]|655
HSP  1	e-value: 0.0	bit: 817.0	Len: 412	Query Start:1	Query End:412	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 412
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagc...................................................................................................................................................................................................................................................
gatttatgatattaatgtaaattaaattttacaaatatagaaattatcttcttgtaaatgcaaatattatgtgttaaaaacaagagatatttacaattctatcctttatggagttttggagggcaatttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagc...................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-110	bit: 398.0	Len: 201	Query Start:455	Query End:655	Subject Strand: POSITIVE	Subject Start: 455	Subject End: 655
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgcatcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaagcagagaagagtaggaggggagcatatgtatgagggagtacccaaacatttcgtttgtgcacatccttaatatatacggataaaggttgtgtcagcatttttagtta

Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629
HSP  1	e-value: 2.0E-83	bit: 311.0	Len: 251	Query Start:132	Query End:382	Subject Strand: NEGATIVE	Subject Start: 286	Subject End: 524
...................................................................................................................................cccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatata.................................................................................................................................................................................................................................................................................
...................................................................................................................................cccaaattacgcggtaccctattgggcgtttaccatta-----ataatggacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgaaatgtgaagcctttttccccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaatt-------gtcatgccgggtacatgattcggcgtgtaacacacataaccattacccgaaagggctgaaagccagatata.................................................................................................................................................................................................................................................................................

Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455
HSP  1	e-value: 6.0E-71	bit: 270.0	Len: 252	Query Start:127	Query End:378	Subject Strand: POSITIVE	Subject Start: 29	Subject End: 272
..............................................................................................................................tttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgcctttttt--cccaacgcttcgcattgggctgaatgatct--cgccccctatttattaatggttaattgtcaatggtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccga.....................................................................................................................................................................................................................................................................................
..............................................................................................................................tttaacccaaatcacgcgatatactgttgggcgtt-----ttccattaataatggacgtatgaatgtacgacaatggttacgtcaggcttacagccctccgccgagatacgatgctttttttcccccaacgcttcgcattgggctgaatgatctccccccccctatttattaatggttaatt-------gtcatgccgggtacatgattcagcgtgtaacacgcataaccattacccgaaagggctgaaagcccga.....................................................................................................................................................................................................................................................................................
HSP  2	e-value: 3.0E-11	bit: 71.9	Len: 67	Query Start:482	Query End:548	Subject Strand: POSITIVE	Subject Start: 327	Subject End: 387
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagggctgaaggtctgaattaaattcatccttatttgtatttgttctattgccgaatgtgggtttaa...........................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagggctgaaggcctgaattaaattcatcct------tatttgttctattgccgaatctgggtttaa...........................................................................................................

Subject: tfor_TF1654_TF1655|hypothetical protein:long-chain-fatty-acid-CoA ligase|POSITIVE:POSITIVE|[1768766,1769418]|653
HSP  1	e-value: 3.0E-48	bit: 194.0	Len: 129	Query Start:284	Query End:412	Subject Strand: NEGATIVE	Subject Start: 501	Subject End: 636
...........................................................................................................................................................................................................................................................................................cctatttattaatggttaattgtcaatggt-------catgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagcaatcagc...................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................cctatttattaatggtgaattgtcaatggttaattgtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtattcagtaatcagc...................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-16	bit: 89.7	Len: 57	Query Start:460	Query End:516	Subject Strand: NEGATIVE	Subject Start: 413	Subject End: 469
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatt...........................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcgaggtttataagggctgaaggcctgaattaaattcattcttatt...........................................................................................................................................

Subject: tfor_TF0339_TF0340|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[363808,364032]|225
HSP  1	e-value: 3.0E-45	bit: 184.0	Len: 137	Query Start:137	Query End:273	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 132
........................................................................................................................................attacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................................................................attacgcgatacacggttcggcgtttaccatt-----aataatgaacgtacgaatgtacgacaagggttacgtcaggcttacagcccttcgccgagacgcgatgcctttttccccagcgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF2047_TF2048|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2210359,2210782]|424
HSP  1	e-value: 4.0E-44	bit: 180.0	Len: 147	Query Start:137	Query End:283	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 142
........................................................................................................................................attacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaatgatctcgccc....................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................................................................attacgcgatacactgttcggcgtttaccatta-----atcatggacgtacgaatgcacgacaatggttacgtcaggcttacagccctccgccgggatgcgatgcctttttccccaacgcttcgcattgggctgaattatctcgccc....................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF1273_TF1274|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1357523,1357760]|238
HSP  1	e-value: 1.0E-41	bit: 172.0	Len: 147	Query Start:127	Query End:273	Subject Strand: POSITIVE	Subject Start: 93	Subject End: 234
..............................................................................................................................tttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
..............................................................................................................................tttatcccaaattacgcgatacactgttcggcgtttaccatta-----atcatggacgtacgaatgcacgacaatggttacgtcaggcttacagccctccgccgggatgcgatgccttttcccccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787
HSP  1	e-value: 1.0E-41	bit: 172.0	Len: 142	Query Start:132	Query End:273	Subject Strand: NEGATIVE	Subject Start: 406	Subject End: 543
...................................................................................................................................cccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcgatgcctttttt-cccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
...................................................................................................................................cccaaattacgcgatacactgttcggtgtttaccatta-----ataatggacgtacgaatgtacgacaatggttacgtcaagcttacagccctccgccgagatgcgatgctttttttccccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-16	bit: 89.7	Len: 57	Query Start:460	Query End:516	Subject Strand: NEGATIVE	Subject Start: 35	Subject End: 91
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatt...........................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcgaggtttataagggctgaaggcctgaattaaattcattcttatt...........................................................................................................................................
HSP  3	e-value: 3.0E-8	bit: 61.9	Len: 43	Query Start:363	Query End:405	Subject Strand: NEGATIVE	Subject Start: 146	Subject End: 188
..........................................................................................................................................................................................................................................................................................................................................................................agggctgcaagcccgatataatcgttagcggtcagtgttcagc..........................................................................................................................................................................................................................................................
..........................................................................................................................................................................................................................................................................................................................................................................agggctgtaagcctgatataatcgttagcggtcagtattcagc..........................................................................................................................................................................................................................................................

Subject: tfor_TF0467_TF0468|acetyltransferase-related protein:hypothetical protein|POSITIVE:POSITIVE|[486604,487068]|465
HSP  1	e-value: 9.0E-33	bit: 143.0	Len: 135	Query Start:127	Query End:261	Subject Strand: POSITIVE	Subject Start: 19	Subject End: 149
..............................................................................................................................tttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggctta-cagccctccgccgagacgcgatgccttttttcccaacgcttcgc..........................................................................................................................................................................................................................................................................................................................................................................................................
..............................................................................................................................tttatcccaaattacgcgatacattgttcggcgtttaccatta-----ataatggacgtgcgaatgtacgacaatggttacgtcaggcttttcagccctccgccgagatgcgatgcctttttccccaacgcttcgc..........................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-10	bit: 67.9	Len: 59	Query Start:298	Query End:356	Subject Strand: POSITIVE	Subject Start: 386	Subject End: 446
.........................................................................................................................................................................................................................................................................................................gttaattgtcaatggtcat--gccgggtacatgattcggcgtgtaacacgcataaccatta...........................................................................................................................................................................................................................................................................................................
.........................................................................................................................................................................................................................................................................................................gttaattgtcaatggttatttgctgggtacatgattcggcgtgtaccacgcataacaatta...........................................................................................................................................................................................................................................................................................................

Subject: tfor_TF3104_TF3105|outer membrane protein, TonB dependent receptor:hypothetical protein|POSITIVE:POSITIVE|[3337511,3338207]|697
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 67	Query Start:339	Query End:405	Subject Strand: NEGATIVE	Subject Start: 590	Subject End: 656
..................................................................................................................................................................................................................................................................................................................................................taacacgcataaccattacccgaaagggctgcaagcccgatataatcgttagcggtcagtgttcagc..........................................................................................................................................................................................................................................................
..................................................................................................................................................................................................................................................................................................................................................taacacgcataaccattacccgaaagggctgaaagcctgatataatcgttagcggtcagtattcagc..........................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-16	bit: 89.7	Len: 57	Query Start:460	Query End:516	Subject Strand: NEGATIVE	Subject Start: 463	Subject End: 519
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagggctgaaggtctgaattaaattcatccttatt...........................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagagctgaaggcctgaattaaattcattcttatt...........................................................................................................................................

Subject: tfor_TF2547_TF2548|hypothetical protein:30S ribosomal protein S12|POSITIVE:POSITIVE|[2731008,2731377]|370
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 112	Query Start:126	Query End:237	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 108
.............................................................................................................................atttaccccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctccgccgagacgcg..................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................................................................................atttatcccaaattacgcgatacaccgttcggcgtttatcata----taataatagacgtacgaatatacgacaagggttacgtcagacttacaaccctccgccgagacgcg..................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF2201_TF2202|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2378345,2378821]|477
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 115	Query Start:242	Query End:356	Subject Strand: POSITIVE	Subject Start: 317	Subject End: 444
.................................................................................................................................................................................................................................................cttttttcccaacgcttcgcattgggctgaatgatctcgcccc-------ctatttattaatggttaattgtcaatggtca------tgccgggtacatgattcggcgtgtaacacgcataaccatta...........................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctttttccccaacgcttcgcattgggctgaattatctcgccctttcagggctgtttattaatggttaattgtcaatggttaattgtctgccgggtacatgattcggcgtgtaccacgcataaccatta...........................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 58.0	Len: 57	Query Start:170	Query End:226	Subject Strand: POSITIVE	Subject Start: 247	Subject End: 303
.........................................................................................................................................................................cattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctcc.............................................................................................................................................................................................................................................................................................................................................................................................................................................
.........................................................................................................................................................................cattaataatggatgtgcaaatgtatgacaatggttatgtcaggcttacagccctcc.............................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: tfor_TF2035_TF2036|conserved hypothetical protein:possible pyruvate formate-lyase activating enzyme|POSITIVE:POSITIVE|[2195912,2196441]|530
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 67	Query Start:242	Query End:308	Subject Strand: NEGATIVE	Subject Start: 386	Subject End: 452
.................................................................................................................................................................................................................................................cttttttcccaacgcttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtca...........................................................................................................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................ctttttccacaacacttcgcattgggctgaatgatctcgccccctatttattaatggttaattgtca...........................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 7.0E-9	bit: 63.9	Len: 32	Query Start:460	Query End:491	Subject Strand: NEGATIVE	Subject Start: 201	Subject End: 232
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagggctgaa....................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaccgcctctgcggggtttataagggctgaa....................................................................................................................................................................

Subject: tfor_TF0821_TF0822|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[880256,880626]|371
HSP  1	e-value: 3.0E-20	bit: 101.0	Len: 95	Query Start:132	Query End:226	Subject Strand: NEGATIVE	Subject Start: 110	Subject End: 199
...................................................................................................................................cccaaattacgcgatacactgttgggcgtttaccattacattaataatgtacgtacgaatgtacgacaagggttacgtcaggcttacagccctcc.............................................................................................................................................................................................................................................................................................................................................................................................................................................
...................................................................................................................................cccaaattacgcgatacacttttcggcgtttaccatta-----ataatggatgtgcgaatgtacgacaatggttacgtcaggcttacagccctcc.............................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 3.0E-11	bit: 71.9	Len: 40	Query Start:316	Query End:355	Subject Strand: NEGATIVE	Subject Start: 307	Subject End: 346
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcggcgtgtaacacgcataaccatt............................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcggcgtgtaccacgcataaccatt............................................................................................................................................................................................................................................................................................................

Subject: tfor_TF1181_TF1183|methylated-DNA--[protein]-cysteine S-methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1268052,1268530]|479
HSP  1	e-value: 1.0E-16	bit: 89.7	Len: 57	Query Start:217	Query End:273	Subject Strand: NEGATIVE	Subject Start: 402	Subject End: 458
........................................................................................................................................................................................................................acagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................acagcccttcgccgagatgcgatgcctttttccccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-6	bit: 56.0	Len: 36	Query Start:482	Query End:517	Subject Strand: NEGATIVE	Subject Start: 193	Subject End: 228
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagggctgaaggtctgaattaaattcatccttattt..........................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagggctgaaggcctgaattaaattcattcttattt..........................................................................................................................................

Subject: tfor_TF0021_TF0022|outer membrane phospholipase A:two-component system sensor histidine kinase|POSITIVE:POSITIVE|[16980,17434]|455
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 56	Query Start:312	Query End:367	Subject Strand: POSITIVE	Subject Start: 70	Subject End: 125
.......................................................................................................................................................................................................................................................................................................................gtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggc................................................................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................................................................................................gtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggc................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 58.0	Len: 37	Query Start:483	Query End:519	Subject Strand: POSITIVE	Subject Start: 192	Subject End: 228
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggtctgaattaaattcatccttatttgt........................................................................................................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttatttgt........................................................................................................................................

Subject: tfor_TF0677_TF0678|ATP-binding protein, Mrp/Nbp35 family, involved in chromosome partitioning:hypothetical protein|POSITIVE:POSITIVE|[721043,721242]|200
HSP  1	e-value: 7.0E-12	bit: 73.8	Len: 41	Query Start:316	Query End:356	Subject Strand: NEGATIVE	Subject Start: 149	Subject End: 189
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcggcgtgtaacacgcataaccatta...........................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcggcgtgtaccacgcataaccatta...........................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-6	bit: 54.0	Len: 35	Query Start:483	Query End:517	Subject Strand: NEGATIVE	Subject Start: 30	Subject End: 64
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggtctgaattaaattcatccttattt..........................................................................................................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattt..........................................................................................................................................

Subject: tfor_TF2190_TF2191|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2365707,2366073]|367
HSP  1	e-value: 4.0E-10	bit: 67.9	Len: 59	Query Start:298	Query End:356	Subject Strand: NEGATIVE	Subject Start: 271	Subject End: 331
.........................................................................................................................................................................................................................................................................................................gttaattgtcaatggtcat--gccgggtacatgattcggcgtgtaacacgcataaccatta...........................................................................................................................................................................................................................................................................................................
.........................................................................................................................................................................................................................................................................................................gttaattgtcaatggttatttgccgggtacatgattcggagtgtaccgcgcataaccatta...........................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-6	bit: 54.0	Len: 35	Query Start:483	Query End:517	Subject Strand: NEGATIVE	Subject Start: 152	Subject End: 186
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggtctgaattaaattcatccttattt..........................................................................................................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattt..........................................................................................................................................

Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440
HSP  1	e-value: 4.0E-7	bit: 58.0	Len: 65	Query Start:209	Query End:273	Subject Strand: POSITIVE	Subject Start: 8	Subject End: 71
................................................................................................................................................................................................................tcaggcttacagccctccgccgagacgcgatgccttttttcccaacgcttcgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
................................................................................................................................................................................................................tcaggctttcagccctccgctgagggg-gttgccttgtttcccaacgctttgcattgggctgaat..............................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-6	bit: 56.0	Len: 36	Query Start:316	Query End:351	Subject Strand: POSITIVE	Subject Start: 123	Subject End: 158
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcggcgtgtaacacgcataac................................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................tgccgggtacatgattcgacgtgtaccacgcataac................................................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GAUUUAUGAUAUUAAUGUAAAUUAAAUUUUACAAAUAUAGAAAUUAUCUUCUUGUAAAUGCAAAUAUUAUGUGUUAAAAACAAGAGAUAUUUACAAUUCUAUCCUUUAUGGAGUUUUGGAGGGCAAUUUACCCCAAAUUACGCGAUACACUGUUGGGCGUUUACCAUUACAUUAAUAAUGUACGUACGAAUGUACGACAAGGGUUACGUCAGGCUUACAGCCCUCCGCCGAGACGCGAUGCCUUUUUUCCCAACGCUUCGCAUUGGGCUGAAUGAUCUCGCCCCCUAUUUAUUAAUGGUUAAUUGUCAAUGGUCAUGCCGGGUACAUGAUUCGGCGUGUAACACGCAUAACCAUUACCCGAAAGGGCUGCAAGCCCGAUAUAAUCGUUAGCGGUCAGUGUUCAGCAAUCAGCCAACAACUCAACAACUCAACAAUUCAACAUGUCAACAACUCACCGCAUCACCGCCUCUGCGGGGUUUAUAAGGGCUGAAGGUCUGAAUUAAAUUCAUCCUUAUUUGUAUUUGUUCUAUUGCCGAAUGUGGGUUUAAGCAGAGAAGAGUAGGAGGGGAGCAUAUGUAUGAGGGAGUACCCAAACAUUUCGUUUGUGCACAUCCUUAAUAUAUACGGAUAAAGGUUGUGUCAGCAUUUUUAGUUA
.((((...(((((..((((((......)))))))))))..))))(((((.(((((.((((((.......))))))....)))))))))).....((((((((.....))))))))..(((((((............(((....))).....((..(((((..(((..(((((.....)))))(((((....))))).....))).)))))..)).....))))))).....((((((..((((((..(((....(((((.(...((((.((......))))))(((((((..(((((((((..(((...((..((((((((((.....))))))))))...)).))))))))))))(((....)))((((.(((((..(((((.(....(((((.((((((..((.....))..................(((........))).))).))).)))))....((((....)))).).))))).))))).((((..(((((...))))).))))(((..((((((.........))))))..)))....))))....))))))).).))))).(((((((.(((((((.(.(((((.....))))).).)).))))).))))))).))).)))))))))))).............. (-176.00)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAACUAAAAAUGCUGACACAACCUUUAUCCGUAUAUAUUAAGGAUGUGCACAAACGAAAUGUUUGGGUACUCCCUCAUACAUAUGCUCCCCUCCUACUCUUCUCUGCUUAAACCCACAUUCGGCAAUAGAACAAAUACAAAUAAGGAUGAAUUUAAUUCAGACCUUCAGCCCUUAUAAACCCCGCAGAGGCGGUGAUGCGGUGAGUUGUUGACAUGUUGAAUUGUUGAGUUGUUGAGUUGUUGGCUGAUUGCUGAACACUGACCGCUAACGAUUAUAUCGGGCUUGCAGCCCUUUCGGGUAAUGGUUAUGCGUGUUACACGCCGAAUCAUGUACCCGGCAUGACCAUUGACAAUUAACCAUUAAUAAAUAGGGGGCGAGAUCAUUCAGCCCAAUGCGAAGCGUUGGGAAAAAAGGCAUCGCGUCUCGGCGGAGGGCUGUAAGCCUGACGUAACCCUUGUCGUACAUUCGUACGUACAUUAUUAAUGUAAUGGUAAACGCCCAACAGUGUAUCGCGUAAUUUGGGGUAAAUUGCCCUCCAAAACUCCAUAAAGGAUAGAAUUGUAAAUAUCUCUUGUUUUUAACACAUAAUAUUUGCAUUUACAAGAAGAUAAUUUCUAUAUUUGUAAAAUUUAAUUUACAUUAAUAUCAUAAAUC
........((((.(((.....(((((((..((((((....(((..((((.(((((.....))))).))))..))).....)))))).((((..............(((..((((.((((((((((((..((((..........(((.(((((...)))))..)))(((((.(((((....(((((....)))).).....)))))..)))))..))))..))))))))).))).).)))...))).(((((((((((((((...((..((.(((((((((((((((((((((((.((..(((((((((.(((((...)))))....((((((.....))))))...........)))))))))........((((((.((((......((((((((...)))))))).......).))).))))))..))))))))))))))))))).........((((((((....))))).))).......)))))).))....))....)))))).))).)))))).)))).....................))))))).......(((((((((....(((.....)))....)))))))))((((((((.(((.....)))...)))))))).......)))))))............. (-178.12)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1042	380	331	212	163	tfor:TF1655|5end_long-chain-fatty-acid-CoA_ligase_1769279..1769509_POSITIVE
996	270	221	55	7	tfor:TF0821|5end_hypothetical_protein_879879..880109_POSITIVE
965	270	221	227	178	tfor:TF1187|5end_hypothetical_protein_1269625..1269855_POSITIVE
965	270	221	170	121	tfor:TF1186|5end_hypothetical_protein_1269568..1269798_POSITIVE
965	270	221	166	117	tfor:TF1183|5end_hypothetical_protein_1268391..1268621_POSITIVE
950	260	211	64	15	tfor:TF3107|5end_hypothetical_protein_3338459..3338689_POSITIVE
920	300	251	228	179	tfor:TF2036|5end_possible_pyruvate_formate-lyase_activating_enzyme_2196302..2196532_POSITIVE
895	509	461	213	165	tfor:TF0449|5end_transposase_467891..468121_POSITIVE
889	250	201	173	124	tfor:TF1184|5end_hypothetical_protein_1269004..1269234_POSITIVE
842	400	351	194	145	tfor:TF3105|5end_hypothetical_protein_3338068..3338298_POSITIVE
808	369	321	177	122	tfor:TF0822|5end_hypothetical_protein_880487..880717_POSITIVE
808	369	321	215	160	tfor:TF0679|5end_hypothetical_protein_721155..721385_POSITIVE
808	369	321	163	108	tfor:TF0678|5end_hypothetical_protein_721103..721333_POSITIVE
793	270	221	196	144	tfor:TF2478|5end_hypothetical_protein_2655375..2655605_POSITIVE
786	420	371	130	81	tfor:TF2840|5end_hypothetical_protein_3031060..3031290_POSITIVE
762	230	182	190	141	tfor:TF0823|5end_conserved_hypothetical_protein_880660..880890_POSITIVE
752	283	242	106	65	tfor:TF2191|5end_hypothetical_protein_2365934..2366164_POSITIVE
712	358	312	165	119	tfor:TF2796|5end_cytochrome_D_ubiquinol_oxidase,_subunit_II_2981269..2981499_POSITIVE
661	283	242	189	148	tfor:TF0828|5end_hypothetical_protein_887090..887320_POSITIVE
652	286	241	181	137	tfor:TF2824|5end_nucleoside-transporting_protein_nupG_3014701..3014931_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1116	270	221	123	74	tfor:TF2547|3end_hypothetical_protein_2730947..2731097_POSITIVE
965	270	221	85	36	tfor:TF1185|3end_hypothetical_protein_1269563..1269713_POSITIVE
950	260	211	133	84	tfor:TF3106|3end_hypothetical_protein_3338608..3338758_POSITIVE
898	360	312	149	101	tfor:TF2840|3end_hypothetical_protein_3031289..3031439_POSITIVE
898	509	461	49	1	tfor:TF0029|3end_hypothetical_protein_25062..25212_POSITIVE
865	507	461	151	105	tfor:TF0448|3end_hypothetical_protein_467911..468061_POSITIVE
820	270	226	47	3	tfor:TF1182|3end_hypothetical_protein_1268938..1269088_POSITIVE
759	358	311	143	93	tfor:TF0820|3end_hypothetical_protein_879942..880092_POSITIVE
735	230	187	144	100	tfor:TF0678|3end_hypothetical_protein_721335..721485_POSITIVE
559	260	211	140	90	tfor:TF1405|3end_conserved_hypothetical_protein_1481819..1481969_POSITIVE
506	430	388	43	1	tfor:TF1715|3end_thermolysin;_zinc_metalloprotease_1837202..1837352_POSITIVE
480	335	292	135	87	tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE
480	335	292	66	18	tfor:TF1761|3end_hypothetical_protein_1899579..1899729_POSITIVE
474	160	118	148	106	tfor:TF0822|3end_hypothetical_protein_880764..880914_POSITIVE
474	509	461	53	9	tfor:TF0677|3end_ATP-binding_protein,_Mrp/Nbp35_family,_involved_in_chromosome_partitioning_720982..721132_POSITIVE
446	250	201	126	72	tfor:TF2816|3end_hypothetical_protein_3007184..3007334_POSITIVE
445	286	242	49	14	tfor:TF0370|3end_hypothetical_protein_386317..386467_POSITIVE
441	465	424	38	1	tfor:TF1657|3end_lauroyl/myristoyl_acyltransferase_1773407..1773557_POSITIVE
436	260	211	140	90	tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE
430	440	396	48	1	tfor:TF2839|3end_ATP-dependent_exodeoxyribonuclease_3031035..3031185_POSITIVE