Origin IGS: taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcaacagttagtacgttttctaacactaactacatggaaacatacagcttatctcctaaatattttataaaagctatagaagccaatcatagcacatagtaataatcccacaacacctactatgataataatatagttgtgtggaaatactcttactgtcattaaggcaaggagagagagaataaatcctataccactaaaacagagattcattttatgattttttttcgaactgtcaaatgggagtaatatattatccttttgttcaagtatgcccttttctttcagtttccaaataagtctgtttttgtcagtttcgcaagaagggaaatcacaaattttaactctataacgtttcccatcagaatactctattattaaagtacgcttcttattattaagataagatcttgttatgctgtctttggcaataaaaacattacgatgacgctcataatatatacctgacataaaaagacataatatagatacgatgcttaaaatcatacctaaagtaacaggcacttttatcaaaaataaaagtaaagtatataaaggtacaaataagaatgcccaactcatagatgaaaaaaaacaatcatacaatatctttagaatgggctttcttctcatacctttaaattcataccgatcttcgaatatatatattatatcatagattaagactattttgtccatagtgtaattttaatctttgaaaaacacataaagttgcatttttatatgcaactttatgcaattgtatagtttacaaaaccaatgcggctcccccaatagcccagccgacaggatttgaacctattgcccaagcagctccagtagccaaaccaccagcattaactaatgctccacctccggcactacaaatggctcctccaatatcactccatgttccagattcactagtgactccatgatatatggcagcggctcctatttgatttactgagacatcttgaatctgtttatttttcagtgcacttcctccagctattgcaagaattatactgaataacaatattatcttcttcatattattcatatctataattttataattgcagtta Mask Tandem Repeat Region ================================================ taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Find is-nt database================================================ Query_seq: TF0128:TF0129|TF0128:TF0129:hypothetical protein:hypothetical protein:->->:140617..141704 1088 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0128:TF0129|TF0128:TF0129:hypothetical protein:hypothetical protein:->->:140617..141704 1088 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0128:TF0129|TF0128:TF0129:hypothetical protein:hypothetical protein:->->:140617..141704 1088 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 17 End: 316 ................ M I D M N N M K K I I L L F S I I L A I A G G S A L K N K Q I Q D V S V N Q I G A A A I Y H G V T S E S G T W S D I G G .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 276 End: 377 ................................................................................................................................................................................................................................................................................... M L S A G L L G E P H W F C K L Y N C I K L H I K M Q L Y V F F K D ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 323 End: 412 .................................................................................................................................................................................................................................................................................................................................. M Q L H K V A Y K N A T L C V F Q R L K L H Y G Q N S L N L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 491 End: 634 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F F F I Y E L G I L I C T F I Y F T F I F D K S A C Y F R Y D F K H R I Y I M S F Y V R Y I L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 902 End: 1012 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y S L S P C L N D S K S I S T Q L Y Y Y H S R C C G I I T M C Y D W L L ............................................................................ Protein_Len: 60 Strand: + Start: 390 End: 1037 ..................................................................................................................................................................................................................................................................................................................................................................................................... M D K I V L I Y D I I Y I F E D R Y E F K G M R R K P I L K I L Y D C F F S S M S W A F L F V P L Y T L L L F L I K V P ................................................... Protein_Len: 39 Strand: - Start: 740 End: 856 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L T L I Q S K G E Q S V S L F L S I Q F S F S F P M S S C F S L I N S G N S M ........................................................................................................................................................................................................................................ Protein_Len: 42 Strand: - Start: 711 End: 836 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y Y L I R I P F T I S N F N T I E R R A F S V F V S K N P F Q F F L A Y K F L L I M ............................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 413 End: 628 ............................................................................................................................................................................................................................................................................................................................................................................................................................ L P I L L F G M R F I N Y S Q K K E D I L Q A N K N T G K Y V K S K N K I F T G T V K P I I K L M T D I N H R K I D P M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 57 Strand: - Start: 154 End: 324 ......................................................................................................................................................... P T V L S D P V H L S I P P A M Q L A P P P A N T L A P P K A V P A A Q A I P E F G T P Q A I P P A A N T K Y V M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 60 End: 149 ........................................................... Y L E Q L L Q L F H V S F Y V S E L H R L L D F L L R Q W M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 13 End: 108 ............ L I I S I F L I F F I I N N N L I I R A I A P P L A S F F L C M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 345 End: 374 ........................................................................................................................................................................................................................................................................................................................................................TTTGAAAAACACATAAAGTTGCATTTTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 95 HP_score: -10.7 Tail_Score: -4.59853 Start: 330 End: 365 Full_Region: TGTAAACTATACAAT TGCATAAAGTTGCAT ATAAAA ATGCAACTTTATGTG TTTTTCAAAGATTAA .........................................................................................................................................................................................................................................................................................................................................TGCATAAAGTTGCATATAAAAATGCAACTTTATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -13.3 Tail_Score: -3.91164 Start: 332 End: 363 Full_Region: TAAACTATACAATTG CATAAAGTTGCAT ATAAAA ATGCAACTTTATG TGTTTTTCAAAGATT ...........................................................................................................................................................................................................................................................................................................................................CATAAAGTTGCATATAAAAATGCAACTTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 46 HP_score: -2.4 Tail_Score: -3.51699 Start: 577 End: 603 Full_Region: AAGTGCCTGTTACTT TAGGTATGAT TTTAAGC ATCGTATCTA TATTATGTCTTTTTA ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTATGATTTTAAGCATCGTATCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -4.0 Tail_Score: -5.76949 Start: 869 End: 879 Full_Region: cactaaaacagagat tcat ttt atga ttttttttcgaactg ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcattttatga................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF0128:TF0129|TF0128:TF0129:hypothetical protein:hypothetical protein:->->:140617..141704 1088 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatgatataatatatatattcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga Intra-Species Hit: Count: 1 Min: 1 Max: 1088 Len: 1088 Subject: tfor_TF0128_TF0129|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[140617,141704]|1088 HSP 1 e-value: 0.0 bit: 1211.0 Len: 659 Query Start:430 Query End:1088 Subject Strand: POSITIVE Subject Start: 430 Subject End: 1088 .............................................................................................................................................................................................................................................................................................................................................................................................................................................tcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgnnnnnnnncatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgnnnnnnnntcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga .............................................................................................................................................................................................................................................................................................................................................................................................................................................tcgaagatcggtatgaatttaaaggtatgagaagaaagcccattctaaagatattgtatgattgttttttttcatctatgagttgggcattcttatttgtacctttatatactttacttttatttttgataaaagtgcctgttactttaggtatgattttaagcatcgtatctatattatgtctttttatgtcaggtatatattatgagcgtcatcgtaatgtttttattgccaaagacagcataacaagatcttatcttaataataagaagcgtactttaataatagagtattctgatgggaaacgttatagagttaaaatttgtgatttcccttcttgcgaaactgacaaaaacagacttatttggaaactgaaagaaaagggcatacttgaacaaaaggataatatattactcccatttgacagttcgaaaaaaaatcataaaatgaatctctgttttagtggtataggatttattctctctctccttgccttaatgacagtaagagtatttccacacaactatattattatcatagtaggtgttgtgggattattactatgtgctatgattggcttctatagcttttataaaatatttaggagataagctgtatgtttccatgtagttagtgttagaaaacgtactaactgttga HSP 2 e-value: 0.0 bit: 821.0 Len: 414 Query Start:1 Query End:414 Subject Strand: POSITIVE Subject Start: 1 Subject End: 414 taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. taactgcaattataaaattatagatatgaataatatgaagaagataatattgttattcagtataattcttgcaatagctggaggaagtgcactgaaaaataaacagattcaagatgtctcagtaaatcaaataggagccgctgccatatatcatggagtcactagtgaatctggaacatggagtgatattggaggagccatttgtagtgccggaggtggagcattagttaatgctggtggtttggctactggagctgcttgggcaataggttcaaatcctgtcggctgggctattgggggagccgcattggttttgtaaactatacaattgcataaagttgcatataaaaatgcaactttatgtgtttttcaaagattaaaattacactatggacaaaatagtcttaatctatg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACUGCAAUUAUAAAAUUAUAGAUAUGAAUAAUAUGAAGAAGAUAAUAUUGUUAUUCAGUAUAAUUCUUGCAAUAGCUGGAGGAAGUGCACUGAAAAAUAAACAGAUUCAAGAUGUCUCAGUAAAUCAAAUAGGAGCCGCUGCCAUAUAUCAUGGAGUCACUAGUGAAUCUGGAACAUGGAGUGAUAUUGGAGGAGCCAUUUGUAGUGCCGGAGGUGGAGCAUUAGUUAAUGCUGGUGGUUUGGCUACUGGAGCUGCUUGGGCAAUAGGUUCAAAUCCUGUCGGCUGGGCUAUUGGGGGAGCCGCAUUGGUUUUGUAAACUAUACAAUUGCAUAAAGUUGCAUAUAAAAAUGCAACUUUAUGUGUUUUUCAAAGAUUAAAAUUACACUAUGGACAAAAUAGUCUUAAUCUAUGAUAUAAUAUAUAUAUUCGAAGAUCGGUAUGAAUUUAAAGGUAUGAGAAGAAAGCCCAUUCUAAAGAUAUUGUAUGAUUGUUUUUUUUCAUCUAUGAGUUGGGCAUUCUUAUUUGUACCUUUAUAUACUUUACUUUUAUUUUUGAUAAAAGUGCCUGUUACUUUAGGUAUGAUUUUAAGCAUCGUAUCUAUAUUAUGUCUUUUUAUGUCAGGUAUAUAUUAUGAGCGUCAUCGUAAUGUUUUUAUUGCCAAAGACAGCAUAACAAGAUCUUAUCUUAAUAAUAAGAAGCGUACUUUAAUAAUAGAGUAUUCUGAUGGGAAACGUUAUAGAGUUAAAAUUUGUGAUUUCCCUUCUUGCGAAACUGACAAAAACAGACUUAUUUGGAAACUGAAAGAAAAGGGCAUACUUGAACAAAAGGAUAAUAUAUUACUCCCAUUUGACAGUUCGAAAAAAAAUCAUAAAAUGAAUCUCUGUUUUAGUGGUAUAGGAUUUAUUCUCUCUCUCCUUGCCUUAAUGACAGUAAGAGUAUUUCCACACAACUAUAUUAUUAUCAUAGUAGGUGUUGUGGGAUUAUUACUAUGUGCUAUGAUUGGCUUCUAUAGCUUUUAUAAAAUAUUUAGGAGAUAAGCUGUAUGUUUCCAUGUAGUUAGUGUUAGAAAACGUACUAACUGUUGA ((((((((.(((((((((((((((....((((((((..........)))))))).((((((.((.(((((.((.....)).))))).)).)))))).........(((((..(((((..((((...((......))...))))....)))))...)))))...(((.(((((((.((((((((((((..((((((.(((....(((((.((((.(((.((((((((((....)))))).)))).))).)))).)))))...)))..............((((((...((((....(((((((.......(((((((((.((((.(((...((((((((((((((......)))))))))))))).........(((((.............((((......)))).....((((((.((((((((.(((((...(.((((((((....((((((((..(((((((.((((((((...((((.....................))))..))).))))).))))).))..))))))))....((((.((((((((((..(...((((..(((((....((((((((((.......)))))))))).....((((..(((.((((.((((.(((((((((......)))))))))......))))...))))......(((((.....(((((....)))))((.((((((((....)))))))).))...(((((..((((((((.......))))))))))))).)))))..)))..))))..)))))))))..)..)))).)))))).))))..))))).))).)....)))))))))))))......(((((....))))).....)))))).....))))).)))..))))..)))))))))........))))))).))))...))))))........))))))((((((..((((((....))))))...))))))..)))))).)))))).))).)))).)))))))))).))))))))........(((((((.......))))))).))))))))..(((((........)))))...... (-283.36) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAACAGUUAGUACGUUUUCUAACACUAACUACAUGGAAACAUACAGCUUAUCUCCUAAAUAUUUUAUAAAAGCUAUAGAAGCCAAUCAUAGCACAUAGUAAUAAUCCCACAACACCUACUAUGAUAAUAAUAUAGUUGUGUGGAAAUACUCUUACUGUCAUUAAGGCAAGGAGAGAGAGAAUAAAUCCUAUACCACUAAAACAGAGAUUCAUUUUAUGAUUUUUUUUCGAACUGUCAAAUGGGAGUAAUAUAUUAUCCUUUUGUUCAAGUAUGCCCUUUUCUUUCAGUUUCCAAAUAAGUCUGUUUUUGUCAGUUUCGCAAGAAGGGAAAUCACAAAUUUUAACUCUAUAACGUUUCCCAUCAGAAUACUCUAUUAUUAAAGUACGCUUCUUAUUAUUAAGAUAAGAUCUUGUUAUGCUGUCUUUGGCAAUAAAAACAUUACGAUGACGCUCAUAAUAUAUACCUGACAUAAAAAGACAUAAUAUAGAUACGAUGCUUAAAAUCAUACCUAAAGUAACAGGCACUUUUAUCAAAAAUAAAAGUAAAGUAUAUAAAGGUACAAAUAAGAAUGCCCAACUCAUAGAUGAAAAAAAACAAUCAUACAAUAUCUUUAGAAUGGGCUUUCUUCUCAUACCUUUAAAUUCAUACCGAUCUUCGAAUAUAUAUAUUAUAUCAUAGAUUAAGACUAUUUUGUCCAUAGUGUAAUUUUAAUCUUUGAAAAACACAUAAAGUUGCAUUUUUAUAUGCAACUUUAUGCAAUUGUAUAGUUUACAAAACCAAUGCGGCUCCCCCAAUAGCCCAGCCGACAGGAUUUGAACCUAUUGCCCAAGCAGCUCCAGUAGCCAAACCACCAGCAUUAACUAAUGCUCCACCUCCGGCACUACAAAUGGCUCCUCCAAUAUCACUCCAUGUUCCAGAUUCACUAGUGACUCCAUGAUAUAUGGCAGCGGCUCCUAUUUGAUUUACUGAGACAUCUUGAAUCUGUUUAUUUUUCAGUGCACUUCCUCCAGCUAUUGCAAGAAUUAUACUGAAUAACAAUAUUAUCUUCUUCAUAUUAUUCAUAUCUAUAAUUUUAUAAUUGCAGUUA .....(((((((..(((....))))))))))..(((....))).....................((((((((..((((((.(((..........(((((((................)))))))....(((((((((.((((....))))....))))).)))).)))..(((((.(((.((((...............(((((((..((((......(((....(((((....(((((((((((((...............((((..((...(((..................((((((.....(((((((...(((....)))(((((((.....................)))))))...((..((((.((....)).))))..))............))))))).))))))..((((.(((.(((((((.((((..((((((.......((((((((((..(((.........................((((((.........(((........))).((((((((.....)))))))).)))))).((((((((.....(((((.(((((......(((((...................)))))......))))).)))))....))))))))...)))...((.....))....)))))))))).(((.(((((((((.(((.(((....))).))).))))))))).)))......(((((((((((((......)))))))))))))..))))))..)))).((((.((..(((((((.............))))).)))).))))....))))))).)))))))...(((.(((........((((((....))))))........))))))......)))..))..))))...((((((((..((((.(((....))).))..))..)))))).))..)))))))))))))....))))).))).)))))))))))....(((((((.(.(((.....((....))..))).).)))))))......)))).))))))))............)))))).))))))))......... (-222.01) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 449 240 191 69 23 tfor:TF2917|5end_conserved_hypothetical_protein_3112255..3112485_POSITIVE 416 300 251 47 4 tfor:TF0476|5end_conserved_hypothetical_protein_494944..495174_POSITIVE 407 310 261 124 74 tfor:TF2883|5end_peptidyl-prolyl_cis-trans_isomerase_3074321..3074551_POSITIVE 404 246 203 201 151 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 390 308 261 177 126 tfor:TF2831|5end_ABC_transporter,_permease_component_3021317..3021547_POSITIVE 386 300 252 170 127 tfor:TF1343|5end_hypothetical_protein_1424630..1424860_POSITIVE 379 287 243 50 1 tfor:TF1602|5end_L-aspartate_oxidase_1715579..1715809_POSITIVE 374 221 181 46 10 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 374 221 181 46 10 tfor:TF0346|5end_hypothetical_protein_367048..367278_POSITIVE 372 305 261 231 179 tfor:TF0063|5end_conserved_hypothetical_protein_66110..66340_POSITIVE 371 306 261 72 28 tfor:TF1729|5end_aspartokinase_1853310..1853540_POSITIVE 370 306 263 62 23 tfor:TF1925|5end_hypothetical_protein_2074458..2074688_POSITIVE 370 300 251 218 160 tfor:TF1581|5end_hypothetical_protein_1689199..1689429_POSITIVE 369 238 193 104 55 tfor:TF0224|5end_N-acetylglucosamine-6-phosphate_deacetylase_250268..250498_POSITIVE 366 258 211 63 1 tfor:TF1647|5end_cytosine-specific_methyltransferase_1757409..1757639_POSITIVE 364 286 245 224 185 tfor:TF0997|5end_conserved_hypothetical_protein_1051475..1051705_POSITIVE 363 217 172 231 186 tfor:TF0908|5end_integrase_fragment_950729..950959_POSITIVE 362 305 262 189 146 tfor:TF1894|5end_hypothetical_protein_2046739..2046969_POSITIVE 362 299 251 189 138 tfor:TF0499|5end_hypothetical_protein_526257..526487_POSITIVE 361 298 254 223 182 tfor:TF1462|5end_erythronate-4-phosphate_dehydrogenase_1552184..1552414_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 407 310 261 124 74 tfor:TF2882|3end_conserved_hypothetical_protein_3074401..3074551_POSITIVE 395 236 191 65 20 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 386 300 252 80 37 tfor:TF1342|3end_possible_lipoprotein_1424620..1424770_POSITIVE 371 315 271 150 102 tfor:TF2607|3end_conserved_hypothetical_protein_2784645..2784795_POSITIVE 369 238 193 66 17 tfor:TF0223|3end_conserved_hypothetical_protein_250310..250460_POSITIVE 367 318 274 134 101 tfor:TF1198|3end_conserved_hypothetical_protein_1282116..1282266_POSITIVE 366 258 211 63 1 tfor:TF1646|3end_hypothetical_protein_1757489..1757639_POSITIVE 366 319 280 127 92 tfor:TF0616|3end_conserved_hypothetical_protein_650658..650808_POSITIVE 366 224 181 66 11 tfor:TF0247|3end_conserved_hypothetical_protein_278348..278498_POSITIVE 359 307 261 107 56 tfor:TF2472|3end_GAF_domain-containing_protein_2650468..2650618_POSITIVE 351 299 251 56 8 tfor:TF2668|3end_hypothetical_protein_2842733..2842883_POSITIVE 351 322 281 49 4 tfor:TF2016|3end_hypothetical_protein_2173492..2173642_POSITIVE 348 305 264 138 93 tfor:TF2892|3end_seryl-tRNA_synthetase_3080726..3080876_POSITIVE 348 198 151 116 62 tfor:TF0811|3end_conserved_hypothetical_protein;_posible_sugar_phosphate_isomerase_870724..870874_POSITIVE 346 219 171 106 52 tfor:TF3038|3end_conserved_hypothetical_protein_3265799..3265949_POSITIVE 345 304 277 151 122 tfor:TF2342|3end_glutathione_peroxidase_2506639..2506789_POSITIVE 345 257 212 124 69 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 343 273 237 66 29 tfor:TF1367|3end_hypothetical_protein_1447272..1447422_POSITIVE 343 273 237 62 25 tfor:TF1368|3end_hypothetical_protein_1447268..1447418_POSITIVE 338 310 261 110 51 tfor:TF0419|3end_conserved_hypothetical_protein_435794..435944_POSITIVE