Origin IGS: tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttgtttctctcttttgtaagatgtaacgattctctccaggtttgcatagatgttttcccaaaataatatctgcctgaatgagagcgctcattgttgtcgtattgcagccagatatccacatctgtttgaaattcctcctcttttgtaaataatactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatattatttttatgagattaaacatattgcaaaaatagaaaataatactgacgagaaaaacaaaaaactcaaagattgtattttttaacatataaattcttgatactcggggttaatttatcgtttttaacaaatagtattatttacaaaagaggaggaatttcaaacagatgtggatatctggctgcaatacgacaacaatgagcgctctcattcaggcagatattattttgggaaaacatctatgcaaacctggagagaatcgttacatcttacaaaagagagaaacaagctctgccggggagcaacctgttagaaataacccgattggccgaaatggccgagggagcgatgccccctcattccctttggctattccagtcataaatgacaataacggcaaaatatacactttcatgacaaacctttcccctttacaaacctatatcaataggttatgtcaaatacgcaggctgcgactgcgtttttttttgcagtcgcagctttttcacgctacacaggagcttatgattagaaatgaacattcagcgtgcctaaaccatacaacatataataacaagactataaatagtcttgtgtttgccaggtccatttcaagatcatggcaatagtcgttgattgactttgcaaagataagtagaatttcaaaaagaaaaatcttttagcaatttttaccctctaaagaaactctttctaagttaagaccacacaccaattatgtgatccttgctaagcgaagaggctatcaatatcaacaaatctttgtcgtcta Mask Tandem Repeat Region ================================================ tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttgtttctctcttttgtaagatgtaacgattctctccaggtttgcatagatgttttcccaaaataatatctgcctgaatgagagcgctcattgttgtcgtattgcagccagatatccacatctgtttgaaattcctcctcttttgtaaataatactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Find is-nt database================================================ Query_seq: TF0058:TF0059|TF0058:TF0059:conserved hypothetical protein:hypothetical protein:->->:60675..61468 794 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttgtttctctcttttgtaagatgtaacgattctctccaggtttgcatagatgttttcccaaaataatatctgcctgaatgagagcgctcattgttgtcgtattgcagccagatatccacatctgtttgaaattcctcctcttttgtaaataatactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0058:TF0059|TF0058:TF0059:conserved hypothetical protein:hypothetical protein:->->:60675..61468 794 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttgtttctctcttttgtaagatgtaacgattctctccaggtttgcatagatgttttcccaaaataatatctgcctgaatgagagcgctcattgttgtcgtattgcagccagatatccacatctgtttgaaattcctcctcttttgtaaataatactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 24 Min: 505 Max: 654 Len: 150 Subject: gi|67459841|ref|YP_247464.1| Transposase [Rickettsia felis URRWXCal2] HSP 1 e-value: 2.0E-9 bit: 60.1 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 217 Subject End: 266 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y T D L D D L Q L D L D I W L E H F N N E R L H S G K Y C Y G K T P M Q T F Q D S K K L A I E K N ............................................................................................................................................ Subject: gi|67459886|ref|YP_247508.1| Transposase [Rickettsia felis URRWXCal2] HSP 1 e-value: 2.0E-9 bit: 60.1 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 217 Subject End: 266 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y T D L D D L Q L D L D I W L E H F N N E R L H S G K Y C Y G K T P M Q T F Q D S K K L A I E K N ............................................................................................................................................ Subject: UniRef90_Q4UJB4 Cluster: Transposase; n=4; spotted fever group|Rep: Transposase - Rickettsia felis (Rickettsia azadi) HSP 1 e-value: 2.0E-9 bit: 60.1 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 217 Subject End: 266 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y T D L D D L Q L D L D I W L E H F N N E R L H S G K Y C Y G K T P M Q T F Q D S K K L A I E K N ............................................................................................................................................ Subject: gi|118716233|ref|ZP_01568771.1| Integrase, catalytic region [Burkholderia multivorans ATCC 17616] HSP 1 e-value: 1.0E-7 bit: 53.5 Len: 123 Query Start:508 Query End:630 Subject Strand: null Subject Start: 166 Subject End: 206 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R .................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q T D L D A W L D Q Y N N E R E H Q G R W C Y G K T P M R T F L D S L D L A K E K .................................................................................................................................................................... Subject: gi|124004342|ref|ZP_01689188.1| transposase [Microscilla marina ATCC 23134] HSP 1 e-value: 2.0E-7 bit: 53.1 Len: 141 Query Start:514 Query End:654 Subject Strand: null Subject Start: 292 Subject End: 338 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K ............................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I Y N N L E E L Q E D L N K W L D E Y N L N R T H Q G K Y C Y G K T P M R T W L D S L H L A K ............................................................................................................................................ Subject: gi|118036187|ref|ZP_01507595.1| Integrase, catalytic region [Burkholderia phytofirmans PsJN] HSP 1 e-value: 9.0E-7 bit: 50.8 Len: 120 Query Start:508 Query End:627 Subject Strand: null Subject Start: 302 Subject End: 341 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R ....................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T D L D A W L D Q Y N N E R E H Q G R W C Y G K T P M R T F L D S L E L A R E K ....................................................................................................................................................................... Subject: gi|58697625|ref|ZP_00372823.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 214 Subject End: 263 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697634|ref|ZP_00372828.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 146 Subject End: 195 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697708|ref|ZP_00372855.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 146 Subject End: 195 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697755|ref|ZP_00372873.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 209 Subject End: 258 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697842|ref|ZP_00372908.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 146 Subject End: 195 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697885|ref|ZP_00372928.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 146 Subject End: 195 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697910|ref|ZP_00372937.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 146 Subject End: 195 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58698163|ref|ZP_00373085.1| transposase, putative [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 262 Subject End: 311 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58698715|ref|ZP_00373603.1| transposase, putative [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 262 Subject End: 311 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58699619|ref|ZP_00374311.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 7 Subject End: 56 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58699996|ref|ZP_00374560.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 20 Subject End: 69 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58700067|ref|ZP_00374610.1| transposase, putative [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 120 Subject End: 169 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58697836|ref|ZP_00372907.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila simulans] HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 214 Subject End: 263 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: UniRef90_Q4E902 Cluster: ISSod13, transposase; n=1; Wolbachia endosymbiont of Drosophila ananassae|Rep: ISSod13, transposase - Wolbachia endosymbiont of Drosophila ananassae HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 20 Subject End: 69 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: UniRef90_Q4EBQ8 Cluster: Transposase, putative; n=22; Wolbachia|Rep: Transposase, putative - Wolbachia endosymbiont of Drosophila ananassae HSP 1 e-value: 1.0E-6 bit: 50.4 Len: 150 Query Start:505 Query End:654 Subject Strand: null Subject Start: 262 Subject End: 311 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................ Subject: gi|58700211|ref|ZP_00374702.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 2.0E-6 bit: 49.7 Len: 147 Query Start:505 Query End:651 Subject Strand: null Subject Start: 1 Subject End: 49 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ F T K E E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ............................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y S S L E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ............................................................................................................................................... Subject: gi|58699274|ref|ZP_00374069.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 135 Query Start:505 Query End:639 Subject Strand: null Subject Start: 2 Subject End: 46 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ........................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ........................................................................................................................................................... Subject: gi|58700143|ref|ZP_00374656.1| ISSod13, transposase [Wolbachia endosymbiont of Drosophila ananassae] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 135 Query Start:505 Query End:639 Subject Strand: null Subject Start: 2 Subject End: 46 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E E F Q T D V D I W L Q Y D N N E R S H S G R Y Y F G K T S M Q T W R E S L H L T K E R N ........................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E D L Q I D V D H W L R S Y N E T R P H S G K Y C Y G K T P M Q T F L D S K Y I A F Q K N ........................................................................................................................................................... Find nr database================================================ Query_seq: TF0058:TF0059|TF0058:TF0059:conserved hypothetical protein:hypothetical protein:->->:60675..61468 794 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 104 End: 208 ....................................................................................................... M A K R F F F L K F Y L S L Q S Q S T T I A M I L K W T W Q T Q D Y L .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 56 Strand: + Start: 115 End: 282 .................................................................................................................. M F L F E I L L I F A K S I N D Y C H D L E M D L A N T R L F I V L L L Y V V W F R H A E C S F L I I S S C V A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 376 End: 525 ....................................................................................................................................................................................................................................................................................................................................................................................... M K V Y I L P L L S F M T G I A K G N E G A S L P R P F R P I G L F L T G C S P A E L V S L F C K M ............................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 552 End: 647 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F S Q N N I C L N E S A H C C R I A A R Y P H L F E I P P L L ................................................................................................................................................... Protein_Len: 32 Strand: + Start: 697 End: 792 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y M L K N T I F E F F V F L V S I I F Y F C N M F N L I K I I .. Protein_Len: 42 Strand: - Start: 593 End: 718 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q Q R I A A L Y G C R N S I G G R K Y I I S N T L F S L N V G L I L F K Y T L F Y M ............................................................................ Protein_Len: 60 Strand: - Start: 481 End: 660 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ C T A G R C L K N R E K T L H L S E R W T Q M S T K G F Y Y R G S H S R E N N D Y Q L W I D V D T Q F E E E K T F L V M ...................................................................................................................................... Protein_Len: 54 Strand: - Start: 410 End: 571 ......................................................................................................................................................................................................................................................................................................................................................................................................................... S Q F L W L S H P P M A G E A M E A L R T I E L L N S G P L A Q K E R K Y S T V I R E L N A Y I N E W F L M ............................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 165 End: 623 .................................................................................................................................................................... S G R G N R G I P N N R V P Q E G A S S T E R K Q L I Y R N E G P K C L H K G L I I D A Q I L A S M T T T N C G S I W M ........................................................................................................................................................................... tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 130 End: 159 .................................................................................................................................GTTGATTGACTTTGCAAAGATAAGTAGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 53 HP_score: -4.9 Tail_Score: -3.17075 Start: 48 End: 70 Full_Region: TCTTCGCTTAGCAAG GATCACATA ATTGG TGTGTGGTC TTAACTTAGAAAGAG ...............................................GATCACATAATTGGTGTGTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -9.4 Tail_Score: -3.98649 Start: 197 End: 216 Full_Region: TGGACCTGGCAAACA CAAGACTA TTTA TAGTCTTG TTATTATATGTTGTA ....................................................................................................................................................................................................CAAGACTATTTATAGTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 76 HP_score: -9.4 Tail_Score: -3.35597 Start: 197 End: 216 Full_Region: tacaacatataataa caagacta taaa tagtcttg tgtttgccaggtcca ....................................................................................................................................................................................................caagactataaatagtcttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -13.8 Tail_Score: -4.59773 Start: 290 End: 321 Full_Region: atgtcaaatacgcag gctgcgactgcg tttttttt tgcagtcgcagc tttttcacgctacac .................................................................................................................................................................................................................................................................................................gctgcgactgcgtttttttttgcagtcgcagc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -7.9 Tail_Score: -6.09133 Start: 310 End: 326 Full_Region: aggttatgtcaaata cgcaggc tgc gactgcg tttttttttgcagtc .....................................................................................................................................................................................................................................................................................................................cgcaggctgcgactgcg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 52 HP_score: -3.3 Tail_Score: -3.68244 Start: 611 End: 626 Full_Region: TTGTCGTATTGCAGC CAGAT ATCCAC ATCTG TTTGAAATTCCTCCT ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATATCCACATCTG........................................................................................................................................................................ Find igs database================================================ Query_seq: TF0058:TF0059|TF0058:TF0059:conserved hypothetical protein:hypothetical protein:->->:60675..61468 794 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Intra-Species Hit: Count: 1 Min: 1 Max: 794 Len: 794 Subject: tfor_TF0058_TF0059|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[60675,61468]|794 HSP 1 e-value: 0.0 bit: 946.0 Len: 504 Query Start:1 Query End:504 Subject Strand: POSITIVE Subject Start: 1 Subject End: 504 tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcnnnnnnnnncgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagctt.................................................................................................................................................................................................................................................................................................. tagacgacaaagatttgttgatattgatagcctcttcgcttagcaaggatcacataattggtgtgtggtcttaacttagaaagagtttctttagagggtaaaaattgctaaaagatttttctttttgaaattctacttatctttgcaaagtcaatcaacgactattgccatgatcttgaaatggacctggcaaacacaagactatttatagtcttgttattatatgttgtatggtttaggcacgctgaatgttcatttctaatcataagctcctgtgtagcgtgaaaaagctgcgactgcaaaaaaaaacgcagtcgcagcctgcgtatttgacataacctattgatataggtttgtaaaggggaaaggtttgtcatgaaagtgtatattttgccgttattgtcatttatgactggaatagccaaagggaatgagggggcatcgctccctcggccatttcggccaatcgggttatttctaacaggttgctccccggcagagctt.................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 9.0E-52 bit: 206.0 Len: 140 Query Start:655 Query End:794 Subject Strand: POSITIVE Subject Start: 655 Subject End: 794 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagnnnnnnnnnnnnctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactatttgttaaaaacgataaattaaccccgagtatcaagaatttatatgttaaaaaatacaatctttgagttttttgtttttctcgtcagtattattttctatttttgcaatatgtttaatctcataaaaataatatc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGACGACAAAGAUUUGUUGAUAUUGAUAGCCUCUUCGCUUAGCAAGGAUCACAUAAUUGGUGUGUGGUCUUAACUUAGAAAGAGUUUCUUUAGAGGGUAAAAAUUGCUAAAAGAUUUUUCUUUUUGAAAUUCUACUUAUCUUUGCAAAGUCAAUCAACGACUAUUGCCAUGAUCUUGAAAUGGACCUGGCAAACACAAGACUAUUUAUAGUCUUGUUAUUAUAUGUUGUAUGGUUUAGGCACGCUGAAUGUUCAUUUCUAAUCAUAAGCUCCUGUGUAGCGUGAAAAAGCUGCGACUGCAAAAAAAAACGCAGUCGCAGCCUGCGUAUUUGACAUAACCUAUUGAUAUAGGUUUGUAAAGGGGAAAGGUUUGUCAUGAAAGUGUAUAUUUUGCCGUUAUUGUCAUUUAUGACUGGAAUAGCCAAAGGGAAUGAGGGGGCAUCGCUCCCUCGGCCAUUUCGGCCAAUCGGGUUAUUUCUAACAGGUUGCUCCCCGGCAGAGCUUGUUUCUCUCUUUUGUAAGAUGUAACGAUUCUCUCCAGGUUUGCAUAGAUGUUUUCCCAAAAUAAUAUCUGCCUGAAUGAGAGCGCUCAUUGUUGUCGUAUUGCAGCCAGAUAUCCACAUCUGUUUGAAAUUCCUCCUCUUUUGUAAAUAAUACUAUUUGUUAAAAACGAUAAAUUAACCCCGAGUAUCAAGAAUUUAUAUGUUAAAAAAUACAAUCUUUGAGUUUUUUGUUUUUCUCGUCAGUAUUAUUUUCUAUUUUUGCAAUAUGUUUAAUCUCAUAAAAAUAAUAUC ..(((..(((((((..((.((..........(((((..((.((..(((((((((((.....)))))))))))..)).)).)))))....(((((((((.(((((((.......))))))))))))))))..)).))..)))))))....)))....(((((((.(((((.((((...(((((((((.((((....(((((((((....))))))))).(((((((...)))))))........))))...)))))))))..))))..(((.(((((.............(((((((((((..........)))))))))))...((((..(((((.(((((((....)))))))....((.((.((((...((.(((....)))))..)))).)).))..)))))..))))...(((((((((.........((((((((...))))))))((((.....)))).....)))))))))..)))))..)))....))))))).)))))......((((((.((((.(((((((.((((((((((......(((((((..........))))))))))))...))))).....))))))).((((((((((.(((((......)))))....................(.((((((((((...((..((((((((.(((((........((((....(((......))).....))))........))))).))))))))..))..)))))))))).).....))))))))))....)))).))))))........ (-211.89) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAUAUUAUUUUUAUGAGAUUAAACAUAUUGCAAAAAUAGAAAAUAAUACUGACGAGAAAAACAAAAAACUCAAAGAUUGUAUUUUUUAACAUAUAAAUUCUUGAUACUCGGGGUUAAUUUAUCGUUUUUAACAAAUAGUAUUAUUUACAAAAGAGGAGGAAUUUCAAACAGAUGUGGAUAUCUGGCUGCAAUACGACAACAAUGAGCGCUCUCAUUCAGGCAGAUAUUAUUUUGGGAAAACAUCUAUGCAAACCUGGAGAGAAUCGUUACAUCUUACAAAAGAGAGAAACAAGCUCUGCCGGGGAGCAACCUGUUAGAAAUAACCCGAUUGGCCGAAAUGGCCGAGGGAGCGAUGCCCCCUCAUUCCCUUUGGCUAUUCCAGUCAUAAAUGACAAUAACGGCAAAAUAUACACUUUCAUGACAAACCUUUCCCCUUUACAAACCUAUAUCAAUAGGUUAUGUCAAAUACGCAGGCUGCGACUGCGUUUUUUUUUGCAGUCGCAGCUUUUUCACGCUACACAGGAGCUUAUGAUUAGAAAUGAACAUUCAGCGUGCCUAAACCAUACAACAUAUAAUAACAAGACUAUAAAUAGUCUUGUGUUUGCCAGGUCCAUUUCAAGAUCAUGGCAAUAGUCGUUGAUUGACUUUGCAAAGAUAAGUAGAAUUUCAAAAAGAAAAAUCUUUUAGCAAUUUUUACCCUCUAAAGAAACUCUUUCUAAGUUAAGACCACACACCAAUUAUGUGAUCCUUGCUAAGCGAAGAGGCUAUCAAUAUCAACAAAUCUUUGUCGUCUA ((((((.((((((.(((..........((((((.....(.(((((((((((.....((((((..............((((((........))))))..(((((.....)))))..........))))))......))))))))))).)...(((((.((((........((((((.((((((((.(((............((((((....))))))))).))))))))...........)))))).(((...(((((((((....(((...((((......))))..)))...)))).)))))..)))...(((((((((...........((((.((((((((((((((.((.......)).))))).)))))))))...((((....)))).....))))...........)))).))))).....)))))))))...(((((((....)))))))..(((((....((((((((((((((((........))))))))))))))......)).....(((.(((.(((.(((....))).)))..)))...)))........((((........(((((((((....)))))))))..((((((((((........)))).)))))).....)))).))))).))))))......((((((.(((.((((((....)))))).).)).)))))).)))))))))..((((((((.(((...((.((((.........)))).))...))).)).))))))......))))))................... (-204.15) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 470 498 452 216 147 tfor:TF2187|5end_conserved_hypothetical_protein_2361693..2361923_POSITIVE 443 509 461 224 184 tfor:TF0810|5end_possible_outer_membrane_efflux_protein_868438..868668_POSITIVE 424 479 436 196 148 tfor:TF1785|5end_histidine_ammonia-lyase_1924494..1924724_POSITIVE 418 437 394 72 23 tfor:TF1721|5end_2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase_1844374..1844604_POSITIVE 414 469 426 120 68 tfor:TF0992|5end_hypothetical_protein_1048251..1048481_POSITIVE 412 471 431 200 162 tfor:TF2775|5end_conserved_hypothetical_protein;_possible_mucoidy_inhibitor-related_protein_2959668..2959898_POSITIVE 405 470 427 125 67 tfor:TF2674|5end_conserved_hypothetical_protein;_possible_phosphoesterase_2848176..2848406_POSITIVE 404 499 451 51 1 tfor:TF1775|5end_oxidoreductase,_Gfo/Idh/MocA_family_1913135..1913365_POSITIVE 398 460 413 150 91 tfor:TF1240|5end_conserved_hypothetical_protein_1324304..1324534_POSITIVE 395 470 421 203 142 tfor:TF2454|5end_D-alanyl-D-alanine_dipeptidase_2631259..2631489_POSITIVE 386 619 572 139 83 tfor:TF2477|5end_phosphatase_2654229..2654459_POSITIVE 384 460 411 128 74 tfor:TF3158|5end_inner_membrane_protein_3393729..3393959_POSITIVE 378 500 451 111 58 tfor:TF0253|5end_conserved_hypothetical_protein_283707..283937_POSITIVE 377 68 22 56 3 tfor:TF3137|5end_Na+-translocating_NADH-quinone_reductase,_subunit_E_3371307..3371537_POSITIVE 377 465 421 105 61 tfor:TF3123|5end_dTDP-4-dehydrorhamnose_3,5-epimerase_3357775..3358005_POSITIVE 377 500 451 54 6 tfor:TF2021|5end_hypothetical_protein_2177702..2177932_POSITIVE 377 455 411 192 142 tfor:TF0601|5end_aminomethyltransferase_(glycine_cleavage_system_T_protein)_631081..631311_POSITIVE 366 478 431 144 81 tfor:TF3122|5end_ABC_transporter,_ATP-binding_protein_3356047..3356277_POSITIVE 365 470 421 210 150 tfor:TF1468|5end_beta-galactosidase_1557785..1558015_POSITIVE 363 478 437 109 60 tfor:TF2793|5end_possible_L-lysine_2,3-aminomutase_2977661..2977891_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 449 479 438 148 106 tfor:TF2385|3end_conserved_hypothetical_protein;_possible_MazG_family_protein_2551544..2551694_POSITIVE 414 469 426 123 71 tfor:TF0991|3end_probable_NAD(FAD)-dependent_dehydrogenase_1048334..1048484_POSITIVE 405 470 427 141 83 tfor:TF2673|3end_conserved_hypothetical_protein_2848272..2848422_POSITIVE 384 460 411 106 52 tfor:TF3157|3end_sodium/solute_symporter_3393787..3393937_POSITIVE 378 500 451 83 30 tfor:TF0252|3end_hypothetical_protein_283759..283909_POSITIVE 376 498 451 104 58 tfor:TF3009|3end_RNA_polymerase_ECF-type_sigma_factor_3229709..3229859_POSITIVE 366 478 431 141 78 tfor:TF3121|3end_nicotinate_phosphoribosyltransferase_3356124..3356274_POSITIVE 364 471 432 88 39 tfor:TF2640|3end_hypothetical_protein_2809533..2809683_POSITIVE 363 453 413 72 30 tfor:TF1760|3end_guanosine-3',5'-bis(diphosphate)_3'-pyrophosphohydrolase_1899413..1899563_POSITIVE 358 471 431 55 13 tfor:TF0300|3end_hypothetical_protein_325541..325691_POSITIVE 355 470 421 146 83 tfor:TF0699|3end_pyridoxal_phosphate_biosynthetic_protein_742745..742895_POSITIVE 352 454 420 53 23 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 352 455 414 80 35 tfor:TF2433|3end_possible_UDP-2,3-diacylglucosamine_hydrolase_2614043..2614193_POSITIVE 351 447 416 126 94 tfor:TF1088|3end_transposase_fragment_1158466..1158616_POSITIVE 350 478 447 67 41 tfor:TF2357|3end_collagenase_2523900..2524050_POSITIVE 348 470 435 46 5 tfor:TF0463|3end_precorrin-6Y_C5,15-methyltransferase_480291..480441_POSITIVE 347 500 451 92 24 tfor:TF1002|3end_replicative_DNA_helicase_1058232..1058382_POSITIVE 347 404 362 45 6 tfor:TF0960|3end_beta-galactosidase_1010506..1010656_POSITIVE 344 326 290 79 39 tfor:TF2019|3end_dipeptidyl_peptidase_VI_2176401..2176551_POSITIVE 343 500 451 64 9 tfor:TF2847|3end_hypothetical_protein_3034985..3035135_POSITIVE