Origin IGS: tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaggacacataagccacgggtaacagcatattatattctaccgaacggacatgttcacacacatgtcccattcggtattttcttttttataatgccacttctatccatatcgacgccacaagtacgcagttatctcaaacctgtaatacacacagtttctttggtttacctttatccatacaccgctgttggtgtcattaaatacatagtaatatagtaatatggaacaaataagaatgaatttaattcaggccttcagccctccgaacaaggtccggatgtcgataccccacccttacgggatggggctgaaataattcgggctcccggccctttcgggtaatgggtatgcgcattacacgtcgaatcatgtacccggcatgacaattcaccattgacaattaacctgtcgtacattcgtatccattattaattatatgtcgagaggatatca Mask Tandem Repeat Region ================================================ tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Find is-nt database================================================ Query_seq: TF0021:TF0022|TF0021:TF0022:outer membrane phospholipase A:two-component system sensor histidine kinase:->->:16980..17434 455 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF0021:TF0022|TF0021:TF0022:outer membrane phospholipase A:two-component system sensor histidine kinase:->->:16980..17434 455 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF0021:TF0022|TF0021:TF0022:outer membrane phospholipase A:two-component system sensor histidine kinase:->->:16980..17434 455 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Predict ORF larger than 30AA ================================================ Protein_Len: 55 Strand: + Start: 32 End: 196 ............................... M R M Y D R L I V N G E L S C R V H D S T C N A H T H Y P K G P G A R I I S A P S R K G G V S T S G P C S E G ................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 54 End: 209 ..................................................... M S M V N C H A G Y M I R R V M R I P I T R K G R E P E L F Q P H P V R V G Y R H P D L V R R A E G L N ...................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 208 End: 351 ............................................................................................................................................................................................................... M K F I L I C S I L L Y Y Y V F N D T N S G V W I K V N Q R N C V Y Y R F E I T A Y L W R R Y G ........................................................................................................ Protein_Len: 57 Strand: - Start: 257 End: 427 ................................................................................................................................................................................................................................................................ H C W C R H I S L P L G F F S H T N C T Q S L Q T S T A D I H I S T A N Y F L F Y R I P C T H S C T R E T S Y L M ............................ Protein_Len: 60 Strand: - Start: 241 End: 420 ................................................................................................................................................................................................................................................ I V I Y K I V G V A T Y P Y L Y V L S V T H I V P K L Y S R V Q P T S I S L L P M I F F F I G F P V H T H V H G N P L M ................................... Protein_Len: 31 Strand: - Start: 141 End: 233 ............................................................................................................................................ K L G M G Y P H P I S M R V K N P P S F A Q I L N M R I Q E M .............................................................................................................................................................................................................................. tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -9.8 Tail_Score: -5.49579 Start: 378 End: 416 Full_Region: cagcatattatattc taccgaacggacatgt tcacac acatgtcccattcggta ttttcttttttataa .........................................................................................................................................................................................................................................................................................................................................................................................taccgaacggacatgttcacacacatgtcccattcggta....................................... Find igs database================================================ Query_seq: TF0021:TF0022|TF0021:TF0022:outer membrane phospholipase A:two-component system sensor histidine kinase:->->:16980..17434 455 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Intra-Species Hit: Count: 11 Min: 1 Max: 455 Len: 455 Subject: tfor_TF0021_TF0022|outer membrane phospholipase A:two-component system sensor histidine kinase|POSITIVE:POSITIVE|[16980,17434]|455 HSP 1 e-value: 0.0 bit: 902.0 Len: 455 Query Start:1 Query End:455 Subject Strand: POSITIVE Subject Start: 1 Subject End: 455 tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca tgatatcctctcgacatataattaataatggatacgaatgtacgacaggttaattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttccatattactatattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggcattataaaaaagaaaataccgaatgggacatgtgtgtgaacatgtccgttcggtagaatataatatgctgttacccgtggcttatgtgtcctca Subject: tfor_TF1473_TF1474|hypothetical protein:6- phosphogluconolactonase|POSITIVE:POSITIVE|[1567027, 1567481]|455 HSP 1 e-value: 6.0E-64 bit: 246.0 Len: 172 Query Start:59 Query End:230 Subject Strand: POSITIVE Subject Start: 195 Subject End: 366 ..........................................................aatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttc................................................................................................................................................................................................................................. ..........................................................aatggttaattgtcatgccgggtacatgattcagcgtgtaacacgcataaccattacccgaaagggctgaaagcccgaattatttcagccccatcccgtaagggtgggggatcgacatccggaccttgttcgaagggctgaaggcctgaattaaattcatccttatttgttc................................................................................................................................................................................................................................. Subject: tfor_TF3003_TF3004|hypothetical protein:phosphoribosylformylglycinamidine (FGAM) synthase|POSITIVE:POSITIVE|[3220690,3220958]|269 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 111 Query Start:116 Query End:226 Subject Strand: POSITIVE Subject Start: 39 Subject End: 149 ...................................................................................................................ccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... ...................................................................................................................ccgaaagggctgaaagcccgaattatttcagccccatcccgcaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... Subject: tfor_TF2190_TF2191|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2365707,2366073]|367 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 111 Query Start:116 Query End:226 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 262 ...................................................................................................................ccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... ...................................................................................................................ccgaaagggctgaaagcccgaattatttcagccccatcccgcaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... Subject: tfor_TF0677_TF0678|ATP-binding protein, Mrp/Nbp35 family, involved in chromosome partitioning:hypothetical protein|POSITIVE:POSITIVE|[721043,721242]|200 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 111 Query Start:116 Query End:226 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 140 ...................................................................................................................ccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... ...................................................................................................................ccgaaagggctgaaagcccgaattatttcagccctatcccgcaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... Subject: tfor_TF0585_TF0586|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[616824,617452]|629 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 172 Query Start:59 Query End:230 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 367 ..........................................................aatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggccgggagcccgaattatttcagccccatcccgtaagggtggggtatcgacatccggaccttgttcggagggctgaaggcctgaattaaattcattcttatttgttc................................................................................................................................................................................................................................. ..........................................................aatggttaattgtcatgccgggtacatgattcggcgtgtaacacacataaccattacccgaaagggctgaaagccagatatatttcagccccatcccgtaagggtgggggatccatgcccatatcttggttagagggctgaaggcctgaattaaattcattcttattggttc................................................................................................................................................................................................................................. Subject: tfor_TF1290_TF1291|hypothetical protein:response regulator (fimR protein)|POSITIVE:POSITIVE|[1371882,1372098]|217 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 120 Query Start:242 Query End:361 Subject Strand: POSITIVE Subject Start: 21 Subject End: 141 .................................................................................................................................................................................................................................................attactatgtatttaatgacaccaacagcggtgtatggataaag-gtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgatatggatagaagtggc.............................................................................................. .................................................................................................................................................................................................................................................attactacgtatttaatgacaccaacagcggtgcacggaaaaaaagtaaatcaaagaaaccgtgtatgttagaggtttgagataactgcgtacttgtggcgttgatatggatagaagtggc.............................................................................................. Subject: tfor_TF1654_TF1655|hypothetical protein:long-chain-fatty-acid-CoA ligase|POSITIVE:POSITIVE|[1768766,1769418]|653 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 74 Query Start:52 Query End:125 Subject Strand: NEGATIVE Subject Start: 546 Subject End: 619 ...................................................aattgtcaatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... ...................................................aattgtcaatggttaattgtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 39 Query Start:192 Query End:230 Subject Strand: NEGATIVE Subject Start: 408 Subject End: 446 ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttatttgttc................................................................................................................................................................................................................................. ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattggttc................................................................................................................................................................................................................................. Subject: tfor_TF1483_TF1484|glycosyltransferase family protein:penicillin binding protein|POSITIVE:POSITIVE|[1578886,1579698]|813 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 67 Query Start:59 Query End:125 Subject Strand: POSITIVE Subject Start: 515 Subject End: 581 ..........................................................aatggtgaattgtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... ..........................................................aatggttaattgtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:192 Query End:226 Subject Strand: POSITIVE Subject Start: 577 Subject End: 611 ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... ...............................................................................................................................................................................................agggctgaaagcctgaattaaattcattcttattt..................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 39 Query Start:48 Query End:86 Subject Strand: POSITIVE Subject Start: 7 Subject End: 45 ...............................................ggttaattgtcaatggtgaattgtcatgccgggtacatg................................................................................................................................................................................................................................................................................................................................................................................. ...............................................ggttaattgtcaattgttaattgttatgccgggtacatg................................................................................................................................................................................................................................................................................................................................................................................. HSP 4 e-value: 4.0E-6 bit: 54.0 Len: 39 Query Start:48 Query End:86 Subject Strand: POSITIVE Subject Start: 305 Subject End: 343 ...............................................ggttaattgtcaatggtgaattgtcatgccgggtacatg................................................................................................................................................................................................................................................................................................................................................................................. ...............................................ggttaattgtcaattgttaattgttatgccgggtacatg................................................................................................................................................................................................................................................................................................................................................................................. Subject: tfor_TF0179_TF0180|pyrophosphate-energized proton pump:carboxynorspermidine decarboxylase|POSITIVE:POSITIVE|[190752,191406]|655 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 56 Query Start:70 Query End:125 Subject Strand: POSITIVE Subject Start: 312 Subject End: 367 .....................................................................gtcatgccgggtacatgattcgacgtgtaatgcgcatacccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... .....................................................................gtcatgccgggtacatgattcggcgtgtaacacgcataaccattacccgaaagggc.......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 37 Query Start:192 Query End:228 Subject Strand: POSITIVE Subject Start: 483 Subject End: 519 ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttatttgt................................................................................................................................................................................................................................... ...............................................................................................................................................................................................agggctgaaggtctgaattaaattcatccttatttgt................................................................................................................................................................................................................................... Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 48 Query Start:120 Query End:167 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 260 .......................................................................................................................aagggccgggagcccgaattatttcagccccatcccgtaagggtgggg................................................................................................................................................................................................................................................................................................ .......................................................................................................................aagggctggaagcccgaattatttcagccccatcccgtaagggtgggg................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 39 Query Start:192 Query End:230 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 68 ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttatttgttc................................................................................................................................................................................................................................. ...............................................................................................................................................................................................agggctgaaggcctgaattaaattcattcttattggttc................................................................................................................................................................................................................................. Inter-species Hit: Count: 1 Min: 240 Max: 346 Len: 107 Subject: pint_PI0224_PI0225|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[222040,222177]|138 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 107 Query Start:240 Query End:346 Subject Strand: POSITIVE Subject Start: 32 Subject End: 138 ...............................................................................................................................................................................................................................................atattactatgtatttaatgacaccaacagcggtgtatggataaaggtaaaccaaagaaactgtgtgtattacaggtttgagataactgcgtacttgtggcgtcgat............................................................................................................. ...............................................................................................................................................................................................................................................atattacaatgtatttaataacaccaacagcggtgcacggacaaaagtaaatcaaagaaacagtgtatgttaggggtttgagataactgcgtacttgtggcttcgat............................................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAUUACUAUGUAUUUAAUGACACCAACAGCGGUGUAUGGAUAAAGGUAAACCAAAGAAACUGUGUGUAUUACAGGUUUGAGAUAACUGCGUACUUGUGGCGUCGAU ...(((((...((((((...(((((......))))).))))))..)))))..((((....(((((.....))))).)))).(((..(..((....))..).)))... (-21.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCGACGCCACAAGUACGCAGUUAUCUCAAACCUGUAAUACACACAGUUUCUUUGGUUUACCUUUAUCCAUACACCGCUGUUGGUGUCAUUAAAUACAUAGUAAUAU ...(((((((...(((.((((...........))))..)))..(((((.....(((...........)))......))))))))))))................... (-19.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 264 53 18 57 18 tfor:TF1241|5end_prolyl-tRNA_synthetase_1324711..1324941_POSITIVE 252 64 23 119 71 tfor:TF2296|5end_hypothetical_protein_2448892..2449122_POSITIVE 244 66 31 172 127 tfor:TF2271|5end_conserved_hypothetical_protein_2435802..2436032_POSITIVE 242 77 33 44 6 tfor:TF1552|5end_conserved_hypothetical_protein_1657097..1657327_POSITIVE 240 41 9 86 49 tfor:TF1517|5end_hypothetical_protein_1626694..1626924_POSITIVE 239 98 60 126 86 tfor:TF1287|5end_hypothetical_protein_1369545..1369775_POSITIVE 239 98 53 109 73 tfor:TF1253|5end_hypothetical_protein_1335982..1336212_POSITIVE 237 41 5 225 182 tfor:TF1280|5end_electron_transfer_flavoprotein,_beta_subunit_1364299..1364529_POSITIVE 236 48 12 69 37 tfor:TF1924|5end_prenyltransferase,_UbiA_family_2072857..2073087_POSITIVE 235 67 21 47 3 tfor:TF1234|5end_rhamnulose-1-phosphate_aldolase_1318875..1319105_POSITIVE 233 79 32 157 113 tfor:TF2418|5end_GTP-binding_protein_2597204..2597434_POSITIVE 233 82 45 212 174 tfor:TF1882|5end_conserved_hypothetical_protein_2033987..2034217_POSITIVE 230 100 61 150 110 tfor:TF0431|5end_hypothetical_protein_452178..452408_POSITIVE 230 100 61 135 95 tfor:TF0430|5end_hypothetical_protein_452163..452393_POSITIVE 228 100 62 190 152 tfor:TF2280|5end_hypothetical_protein_2439140..2439370_POSITIVE 228 98 52 113 67 tfor:TF1202|5end_antitermination_factor,_NusB_family_1284152..1284382_POSITIVE 226 99 53 214 159 tfor:TF2509|5end_ATP-dependent_clp_protease,_proteolytic_subunit_2687562..2687792_POSITIVE 225 100 55 125 75 tfor:TF1827|5end_hypothetical_protein_1976798..1977028_POSITIVE 225 39 4 33 1 tfor:TF1141|5end_conserved_hypothetical_protein_1217972..1218202_POSITIVE 224 100 61 81 35 tfor:TF0947|5end_extracellular_protease_990627..990857_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 328 100 60 46 8 tfor:TF0925|3end_hypothetical_protein_962127..962277_POSITIVE 252 80 32 136 85 tfor:TF2219|3end_two-component_system_sensor_histidine_2392264..2392414_POSITIVE 244 66 31 51 6 tfor:TF2270|3end_conserved_hypothetical_protein_2435761..2435911_POSITIVE 240 41 9 65 28 tfor:TF1516|3end_transposase_fragment_1626753..1626903_POSITIVE 239 98 53 131 95 tfor:TF1252|3end_phosphofructokinase;_pyrophosphate-fructose_6-phosphate_1-phosphotransferase_(probable_beta_subunit)_1336084..1336234_POSITIVE 236 48 12 61 29 tfor:TF1923|3end_conserved_hypothetical_protein;_possible_phosphoserine_phosphatase_2072929..2073079_POSITIVE 230 100 61 119 79 tfor:TF0429|3end_ABC_transporter,_ATP-binding_protein_452227..452377_POSITIVE 225 100 55 59 9 tfor:TF1982|3end_1,4-alpha-glucan_branching_enzyme_2134130..2134280_POSITIVE 225 100 55 59 9 tfor:TF1826|3end_1,4-alpha-glucan_branching_enzyme,_N-terminal_region_1976812..1976962_POSITIVE 224 100 61 72 26 tfor:TF0946|3end_iron(III)_ABC_transporter,_periplasmic_iron-binding_protein_990698..990848_POSITIVE 224 69 23 69 19 tfor:TF0378|3end_aspartyl-tRNA_synthetase_399520..399670_POSITIVE 224 63 26 39 4 tfor:TF0224|3end_N-acetylglucosamine-6-phosphate_deacetylase_251547..251697_POSITIVE 221 100 57 78 29 tfor:TF1575|3end_DNA-binding_response_regulator_1685895..1686045_POSITIVE 218 77 31 115 55 tfor:TF0864|3end_O-succinylbenzoate--CoA_ligase_915708..915858_POSITIVE 218 93 51 47 10 tfor:TF0319|3end_tolB_protein_345737..345887_POSITIVE 216 50 7 106 70 tfor:TF1499|3end_3-oxyacyl-[acyl-carrier_protein]_synthase_1599478..1599628_POSITIVE 211 70 21 65 5 tfor:TF3130|3end_conserved_hypothetical_protein_3364172..3364322_POSITIVE 211 44 19 78 48 tfor:TF2330|3end_conserved_hypothetical_protein_2491109..2491259_POSITIVE 210 80 31 126 74 tfor:TF2332|3end_signal_peptidase_I_2492613..2492763_POSITIVE 210 99 52 69 24 tfor:TF1342|3end_possible_lipoprotein_1424620..1424770_POSITIVE