Origin IGS: tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaaagcaaaccattcttctcaggtgaggggaatggttcctttttaatggtaaaggccgcactttttaagaaaaatatgataaaatagactctgtacgtacttgatacaaagatgagggtattaaataatagaatgcatttaaactgcaaggtttagcgatatgagcgagtcaaatcgatatcatttgacgagagagttagtaaagcatttagctaattgcctgatagcgattagcgtgaaaggtttagatgctttagtctcaaacctttctgatgatttgtatcttgagtaattgaacccgggctaaatccctagtgaaaaagatagatttcctggtgtacatggtacactgcgtcaatcgaatgctatcttgtgtaattgaacccggccgaaaagctgtgtaaaaaagataaactgtcttgtcttcatcgaagacttcgtcagtttcctatttttactttgcttttgacgtccttggtatcttgatctttgtaggcaaggcgtataatttcatcaatccaaaggggattaaa Mask Tandem Repeat Region ================================================ tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Find is-nt database================================================ Query_seq: SMT_898:SMT_899|SMT_898:SMT_899:polyribonucleotide nucleotidyltransferase:5,10-methylenetetrahydrofolate reductase:<-<-:846952..847486 535 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_898:SMT_899|SMT_898:SMT_899:polyribonucleotide nucleotidyltransferase:5,10-methylenetetrahydrofolate reductase:<-<-:846952..847486 535 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_898:SMT_899|SMT_898:SMT_899:polyribonucleotide nucleotidyltransferase:5,10-methylenetetrahydrofolate reductase:<-<-:846952..847486 535 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 155 End: 271 .......................................................................................................................................................... M T Q D S I R L T Q C T M Y T R K S I F F T R D L A R V Q L L K I Q I I R K V ........................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 374 End: 466 ..................................................................................................................................................................................................................................................................................................................................................................................... M A K P C S L N A F Y Y L I P S S L Y Q V R T E S I L S Y F S ..................................................................... Protein_Len: 50 Strand: + Start: 385 End: 534 ................................................................................................................................................................................................................................................................................................................................................................................................ M Q F K C I L L F N T L I F V S S T Y R V Y F I I F F L K S A A F T I K K E P F P S P E K N G L L F . Protein_Len: 43 Strand: - Start: 245 End: 373 .................................................................................................................................................................................................................................................... E L Y L D D S L N S V L A D L G K V S I A I L C N A L H K V L E R T L H Y R N S E S M .................................................................................................................................................................. Protein_Len: 35 Strand: - Start: 51 End: 155 .................................................. S V L S T L L L T F I P F Q R L R R H L C S L K D K K C L K E A P N M ............................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 1 End: 114 K I G K P N I F N Y A K G V F I L I G L V D F A F Y F Y S V S S T K S S S M ..................................................................................................................................................................................................................................................................................................................................................................................................................................... tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 405 End: 434 ....................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATACAAAGATGAGGGTATTAAATAAT..................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 71 HP_score: -8.6 Tail_Score: -3.25802 Start: 98 End: 112 Full_Region: aagataaactgtctt gtcttc atc gaagac ttcgtcagtttccta .................................................................................................gtcttcatcgaagac....................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 41 HP_score: -2.3 Tail_Score: -2.90496 Start: 354 End: 380 Full_Region: ttaaactgcaaggtt tagcgatatga gcgag tcaaatcgata tcatttgacgagaga .................................................................................................................................................................................................................................................................................................................................................................tagcgatatgagcgagtcaaatcgata........................................................................................................................................................... Find igs database================================================ Query_seq: SMT_898:SMT_899|SMT_898:SMT_899:polyribonucleotide nucleotidyltransferase:5,10-methylenetetrahydrofolate reductase:<-<-:846952..847486 535 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Intra-Species Hit: Count: 1 Min: 1 Max: 535 Len: 535 Subject: smit_SMT_898_SMT_899|polyribonucleotide nucleotidyltransferase:5,10-methylenetetrahydrofolate reductase|NEGATIVE:NEGATIVE|[846952,847486]|535 HSP 1 e-value: 0.0 bit: 1061.0 Len: 535 Query Start:1 Query End:535 Subject Strand: POSITIVE Subject Start: 1 Subject End: 535 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagatagcattcgattgacgcagtgtaccatgtacaccaggaaatctatctttttcactagggatttagcccgggttcaattactcaagatacaaatcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgcttttta Inter-species Hit: Count: 4 Min: 1 Max: 533 Len: 533 Subject: NC_008533_SPD_0511_SPD_0512|5,10-methylenetetrahydrofolate reductase:polyribonucleotide nucleotidyltransferase|POSITIVE:POSITIVE|[522656, 523225]|570 HSP 1 e-value: 1.0E-105 bit: 383.0 Len: 277 Query Start:257 Query End:533 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 278 ................................................................................................................................................................................................................................................................atcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. ................................................................................................................................................................................................................................................................atcattagaaaggtttaatactaaagtatctaaagctttcacgctaatcgctatcgggcgattagctaaatgctttactaactctctcgtcaaataacatcgatttgactcactcgtgtcgttaaatcttacagtttaaatgcattgtattatttaataccttcatctttgtatcaagtacgtacagaatttattttatcatatttttcttaaaaagtgaggtctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. HSP 2 e-value: 4.0E-19 bit: 97.6 Len: 53 Query Start:115 Query End:167 Subject Strand: NEGATIVE Subject Start: 518 Subject End: 570 ..................................................................................................................gacagtttatcttttttacacagcttttcggccgggttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................gacagtttatcttttttacacagcttttcggccgtgttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr0515_spr0516|5,10-methylenetetrahydrofolate reductase:Polyribonucleotide nucleotidyltransferase|POSITIVE:POSITIVE|[515126, 515695]|570 HSP 1 e-value: 1.0E-105 bit: 383.0 Len: 277 Query Start:257 Query End:533 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 278 ................................................................................................................................................................................................................................................................atcatcagaaaggtttgagactaaagcatctaaacctttcacgctaatcgctatcaggcaattagctaaatgctttactaactctctcgtcaaatgatatcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. ................................................................................................................................................................................................................................................................atcattagaaaggtttaatactaaagtatctaaagctttcacgctaatcgctatcgggcgattagctaaatgctttactaactctctcgtcaaataacatcgatttgactcactcgtgtcgttaaatcttacagtttaaatgcattgtattatttaataccttcatctttgtatcaagtacgtacagaatttattttatcatatttttcttaaaaagtgaggtctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. HSP 2 e-value: 4.0E-19 bit: 97.6 Len: 53 Query Start:115 Query End:167 Subject Strand: NEGATIVE Subject Start: 518 Subject End: 570 ..................................................................................................................gacagtttatcttttttacacagcttttcggccgggttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................gacagtttatcttttttacacagcttttcggccgtgttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_0587_SP_0588|hypothetical protein:polyribonucleotide nucleotidyltransferase|NEGATIVE:POSITIVE|[557730, 557962]|233 HSP 1 e-value: 4.0E-87 bit: 323.0 Len: 167 Query Start:1 Query End:167 Subject Strand: NEGATIVE Subject Start: 67 Subject End: 233 tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgggttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ tttaatcccctttggattgatgaaattatacgccttgcctacaaagatcaagataccaaggacgtcaaaagcaaagtaaaaataggaaactgacgaagtcttcgatgaagacaagacagtttatcttttttacacagcttttcggccgtgttcaattacacaagata................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_0586_SP_0587|5,10-methylenetetrahydrofolate reductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[557279,557459]|181 HSP 1 e-value: 4.0E-68 bit: 260.0 Len: 179 Query Start:355 Query End:533 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 180 ..................................................................................................................................................................................................................................................................................................................................................................atcgatttgactcgctcatatcgctaaaccttgcagtttaaatgcattctattatttaataccctcatctttgtatcaagtacgtacagagtctattttatcatatttttcttaaaaagtgcggcctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. ..................................................................................................................................................................................................................................................................................................................................................................atcgatttgactcactcgtgtcgttaaatcttacagtttaaatgcattgtattatttaataccttcatctttgtatcaagtacgtacagaatttattttatcatatttttcttaaaaagtgaggtctttaccattaaaaaggaaccattcccctcacctgagaagaatggtttgctttt.. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAAUCCCCUUUGGAUUGAUGAAAUUAUACGCCUUGCCUACAAAGAUCAAGAUACCAAGGACGUCAAAAGCAAAGUAAAAAUAGGAAACUGACGAAGUCUUCGAUGAAGACAAGACAGUUUAUCUUUUUUACACAGCUUUUCGGCCGGGUUCAAUUACACAAGAUAGCAUUCGAUUGACGCAGUGUACCAUGUACACCAGGAAAUCUAUCUUUUUCACUAGGGAUUUAGCCCGGGUUCAAUUACUCAAGAUACAAAUCAUCAGAAAGGUUUGAGACUAAAGCAUCUAAACCUUUCACGCUAAUCGCUAUCAGGCAAUUAGCUAAAUGCUUUACUAACUCUCUCGUCAAAUGAUAUCGAUUUGACUCGCUCAUAUCGCUAAACCUUGCAGUUUAAAUGCAUUCUAUUAUUUAAUACCCUCAUCUUUGUAUCAAGUACGUACAGAGUCUAUUUUAUCAUAUUUUUCUUAAAAAGUGCGGCCUUUACCAUUAAAAAGGAACCAUUCCCCUCACCUGAGAAGAAUGGUUUGCUUUU ...(((((.....)))))((((((((..((((.((((..(((((((((...............(((((((((...(((((((.(((((((((.(...((((((...))))))..).)))))).))))))))))...)))))).))).((((...........(((..(((((.((((..(...((((((...))))))..)..))))............(((((.((((((..((((......))))..((..((((((....(((((((((.(((........))))))))))))..((((((.(((....))).))))))......................(((....)))...))))))..)).........))))))))))).......)))))..)))..........))))..))))))))).))))..))))........))))))))............((((((....(((((........))))).(((((((..(((....)))..)))))))..)))))) (-126.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAGCAAACCAUUCUUCUCAGGUGAGGGGAAUGGUUCCUUUUUAAUGGUAAAGGCCGCACUUUUUAAGAAAAAUAUGAUAAAAUAGACUCUGUACGUACUUGAUACAAAGAUGAGGGUAUUAAAUAAUAGAAUGCAUUUAAACUGCAAGGUUUAGCGAUAUGAGCGAGUCAAAUCGAUAUCAUUUGACGAGAGAGUUAGUAAAGCAUUUAGCUAAUUGCCUGAUAGCGAUUAGCGUGAAAGGUUUAGAUGCUUUAGUCUCAAACCUUUCUGAUGAUUUGUAUCUUGAGUAAUUGAACCCGGGCUAAAUCCCUAGUGAAAAAGAUAGAUUUCCUGGUGUACAUGGUACACUGCGUCAAUCGAAUGCUAUCUUGUGUAAUUGAACCCGGCCGAAAAGCUGUGUAAAAAAGAUAAACUGUCUUGUCUUCAUCGAAGACUUCGUCAGUUUCCUAUUUUUACUUUGCUUUUGACGUCCUUGGUAUCUUGAUCUUUGUAGGCAAGGCGUAUAAUUUCAUCAAUCCAAAGGGGAUUAAA ....((.(((((((((((((....)))))))))))))(((((........)))))..)).........((((..(((......))).....(((((((.((((.(((((((((.(((((((((..........((((.......)))).(((((((..(((..((...(((((((.(....))))))))..............(((((((.(((((((((......)))))))))..(((((((((((((......)))).))))))))).((((...((((((.........((.(((((((..(((((..(..(....)..)..)))))))))).)).)).))))))...))))....)))))))..))..)))..))))))).((.((((((((...(((((((....((((((.(..((((((...))))))...).))))))....)))))))...))))))..)).)).))))))))).)))))))))..))))))))))).))))...(((((.....)))))... (-156.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 892 80 31 171 122 smit:SMT_898|5end_polyribonucleotide_nucleotidyltransferase_846861..847091_NEGATIVE 538 149 101 199 150 smit:SMT_230|5end_hypothetical_protein_predicted_by_Glimmer/Critica_165830..166060_NEGATIVE 352 157 111 108 62 smit:SMT_545|5end_hypothetical_protein_predicted_by_Glimmer/Critica_461249..461479_POSITIVE 321 87 50 135 97 smit:SMT_1505|5end_purine-nucleoside_phosphorylase_1488515..1488745_NEGATIVE 319 154 114 200 161 smit:SMT_1262|5end_ribosomal_protein_L11_methyltransferase_1227152..1227382_POSITIVE 311 95 51 140 95 smit:SMT_342|5end_chaperone_protein_DnaJ_281800..282030_POSITIVE 303 154 112 204 160 smit:SMT_687|5end_carbamoyl-phosphate_synthase,_large_subunit_599264..599494_NEGATIVE 302 50 14 214 171 smit:SMT_848|5end_hypothetical_protein_795153..795383_NEGATIVE 295 419 374 211 160 smit:SMT_1078|5end_folylpolyglutamate_synthase_1016713..1016943_NEGATIVE 294 239 192 131 84 smit:SMT_1634|5end_2,3,4,5-tetrahydropyridine-2-carboxylate_N-succinyltransferase,_putative_1621074..1621304_POSITIVE 293 379 331 224 172 smit:SMT_373|5end_cytosine_specific_DNA_methyltransferase_308546..308776_POSITIVE 289 378 334 67 13 smit:SMT_302|5end_K07444_putative_N6-adenine-specific_DNA_methylase_244808..245038_POSITIVE 285 520 471 63 3 smit:SMT_1626|5end_undecaprenyl-diphosphatase_1616028..1616258_NEGATIVE 281 239 198 157 108 smit:SMT_2045|5end_K+_transport_system,_NAD-binding_component_1956139..1956369_POSITIVE 280 254 218 229 197 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 278 267 221 57 2 smit:SMT_1035|5end_alpha-galactosidase_977941..978171_NEGATIVE 277 316 271 229 184 smit:SMT_2143|5end_threonyl-tRNA_synthetase_2020255..2020485_POSITIVE 277 152 111 231 190 smit:SMT_546|5end_DNA_topoisomerase_IV_subunit_A_461377..461607_POSITIVE 273 380 331 143 96 smit:SMT_338|5end_heat-inducible_transcription_repressor_HrcA_276825..277055_POSITIVE 267 257 212 227 183 smit:SMT_841|5end_dihydrodipicolinate_reductase_788025..788255_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 335 347 303 138 103 smit:SMT_2042|3end_K04077_chaperonin_GroEL_(Hsp60)_1952960..1953110_NEGATIVE 319 154 114 62 23 smit:SMT_1261|3end_MutT/NUDIX_family_protein_1227094..1227244_POSITIVE 293 379 331 148 96 smit:SMT_372|3end_valyl-tRNA_synthetase_308550..308700_POSITIVE 277 316 271 146 101 smit:SMT_2142|3end_hypothetical_protein_predicted_by_Glimmer/Critica_2020252..2020402_POSITIVE 266 379 334 76 26 smit:SMT_1191|3end_phosphoribosylamine--glycine_ligase_1148475..1148625_NEGATIVE 258 256 212 62 19 smit:SMT_842|3end_hypothetical_protein_788414..788564_NEGATIVE 257 160 111 61 8 smit:SMT_688|3end_carbamoyl-phosphate_synthase_small_chain_599576..599726_NEGATIVE 256 270 222 76 18 smit:SMT_2071|3end_phosphoenolpyruvate_carboxylase_1975594..1975744_NEGATIVE 256 389 341 130 80 smit:SMT_242|3end_PTS_system,_mannose-specific_IID_component_179163..179313_NEGATIVE 255 272 232 51 11 smit:SMT_1864|3end_integral_membrane_protein_1827172..1827322_POSITIVE 254 253 218 121 90 smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE 253 457 419 106 71 smit:SMT_2007|3end_hypothetical_protein_1928147..1928297_POSITIVE 252 530 488 92 42 smit:SMT_631|3end_glycerate_kinase_537307..537457_POSITIVE 251 183 143 69 28 smit:SMT_2057|3end_cell_division_protein_FtsH_1966897..1967047_NEGATIVE 250 329 290 103 56 smit:SMT_1786|3end_phenylalanyl-tRNA_synthetase_beta_chain_1763235..1763385_NEGATIVE 249 505 461 63 13 smit:SMT_1006|3end_6-pyruvoyl_tetrahydrobiopterin_synthase,_putative_947122..947272_POSITIVE 246 457 416 76 35 smit:SMT_1274|3end_K02008_cobalt_transport_system_permease_protein_1238615..1238765_POSITIVE 246 520 497 76 54 smit:SMT_431|3end_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase_373631..373781_POSITIVE 245 317 271 137 100 smit:SMT_760|3end_K01990_ABC-2_type_transport_system_ATP-binding_protein_665693..665843_NEGATIVE 241 369 321 99 48 smit:SMT_2073|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1977074..1977224_POSITIVE