Origin IGS: tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttattaagattttgatttgttgtaaataaatttgttacattttatcatagaaaaagtatggtgtcaaattgaggtctataaatgtttactatcatcaaaaaactctccaattgaactggagagtggctgtttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta Mask Tandem Repeat Region ================================================ tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Find is-nt database================================================ Query_seq: SMT_890:SMT_891|SMT_890:SMT_891:K02029 polar amino acid transport system permease protein:oxidoreductase, putative:->->:837753..837989 237 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_890:SMT_891|SMT_890:SMT_891:K02029 polar amino acid transport system permease protein:oxidoreductase, putative:->->:837753..837989 237 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_890:SMT_891|SMT_890:SMT_891:K02029 polar amino acid transport system permease protein:oxidoreductase, putative:->->:837753..837989 237 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 18 End: 158 ................. M Q T T S A S P C R T Q V Q P A S S F L V C S L I F I E Y K Q P L S S S I G E F F D D S K H L ............................................................................... Protein_Len: 31 Strand: + Start: 97 End: 189 ................................................................................................ M S I N S H S P V Q L E S F L M I V N I Y R P Q F D T I L F L ................................................ Protein_Len: 53 Strand: - Start: 53 End: 211 .................................................... T C G A D L K R T Q E K I K M S Y L C G S E L E I P S N K S S L L C K Y V E I Q C W V K E I I F H L L N M .......................... tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 90 Start: 169 End: 198 ........................................................................................................................................................................TTTGACACCATACTTTTTCTATGATAAAAT....................................... PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 189 End: 218 ............................................................................................................................................................................................GTTGTAAATAAATTTGTTACATTTTATCAT................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -10.5 Tail_Score: -5.19212 Start: 114 End: 134 Full_Region: GAGTATAAACAGCCA CTCTCCAGT TCA ATTGGAGAG TTTTTTGATGATAGT .................................................................................................................CTCTCCAGTTCAATTGGAGAG....................................................................................................... Find igs database================================================ Query_seq: SMT_890:SMT_891|SMT_890:SMT_891:K02029 polar amino acid transport system permease protein:oxidoreductase, putative:->->:837753..837989 237 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Intra-Species Hit: Count: 38 Min: 1 Max: 237 Len: 237 Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 1.0E-131 bit: 470.0 Len: 237 Query Start:1 Query End:237 Subject Strand: POSITIVE Subject Start: 1 Subject End: 237 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatcttaataaa Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 2.0E-49 bit: 196.0 Len: 107 Query Start:1 Query End:107 Subject Strand: POSITIVE Subject Start: 1 Subject End: 107 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 202 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 9.0E-46 bit: 184.0 Len: 105 Query Start:3 Query End:107 Subject Strand: POSITIVE Subject Start: 39 Subject End: 143 ..ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. ..ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataaa.................................................................................................................................. Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 177 Subject End: 280 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 209 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 181 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 557 Subject End: 662 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 106 Subject End: 211 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 225 Subject End: 330 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 9.0E-43 bit: 174.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 129 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataa................................................................................................................................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 9.0E-43 bit: 174.0 Len: 112 Query Start:1 Query End:112 Subject Strand: POSITIVE Subject Start: 50 Subject End: 161 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagcc............................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcc............................................................................................................................. Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 216 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 153 Subject End: 258 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 178 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 124 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 192 Subject End: 295 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 8.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 8.0E-40 bit: 165.0 Len: 107 Query Start:1 Query End:107 Subject Strand: POSITIVE Subject Start: 105 Subject End: 211 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 8 Subject End: 113 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:3 Query End:106 Subject Strand: POSITIVE Subject Start: 55 Subject End: 158 ..ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... ..ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 19 Subject End: 122 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 1.0E-32 bit: 141.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 154 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 5.0E-32 bit: 139.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 227 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 1 Subject End: 105 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataa................................................................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 359 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 147 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 102 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... tactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta...................................................................................................................................... Subject: smit_SMT_763_SMT_764|alpha-amylase:alanyl-tRNA synthetase|POSITIVE:NEGATIVE|[669341,669584]|244 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 51 Query Start:57 Query End:107 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 133 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. ........................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 236 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaacaacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: smit_SMT_1871_SMT_1872|modification methylase, HemK family:K03217 preprotein translocase YidC subunit|NEGATIVE:NEGATIVE|[1830592,1830972]|381 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 191 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcgactagcttcctagtttgctctttgattttcattgagkat..................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 337 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta............................................................................................................................................................................................. Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta............................................................................................................................................................................................. HSP 2 e-value: 2.0E-12 bit: 73.8 Len: 37 Query Start:67 Query End:103 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 188 ..................................................................ctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... ..................................................................ctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 4.0E-11 bit: 69.9 Len: 35 Query Start:1 Query End:35 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 270 tactcttcgaaaatcaaattcaaaccacgtcagct.......................................................................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagct.......................................................................................................................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 183 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta............................................................................................................................................................................................. HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 37 Query Start:68 Query End:104 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 69 ...................................................................tagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...................................................................tagcttcatagtttgctttttgattttcattgagtat..................................................................................................................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 163 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................................................................................................................................. Inter-species Hit: Count: 54 Min: 1 Max: 230 Len: 230 Subject: NC_008533_SPD_0527_SPD_0528|oxidoreductase, putative:amino acid ABC transporter, permease protein|NEGATIVE:NEGATIVE|[539375,539631]|257 HSP 1 e-value: 8.0E-77 bit: 287.0 Len: 169 Query Start:62 Query End:230 Subject Strand: NEGATIVE Subject Start: 20 Subject End: 188 .............................................................tgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatct....... .............................................................tgcggctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgagagtagatatttatagacctcaatttgacaccatacattttctatgataaaatgtaacaaatttatttacaacaaatcgaaatct....... Subject: NC_003098_spr0531_spr0532|hypothetical protein:ABC transporter membrane-spanning permease - glutamine transport|NEGATIVE:NEGATIVE|[531857,532101]|245 HSP 1 e-value: 8.0E-77 bit: 287.0 Len: 169 Query Start:62 Query End:230 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 176 .............................................................tgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatct....... .............................................................tgcggctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgagagtagatatttatagacctcaatttgacaccatacattttctatgataaaatgtaacaaatttatttacaacaaatcgaaatct....... Subject: NC_003028_SP_0606_SP_0607|oxidoreductase, putative:amino acid ABC transporter, permease protein|NEGATIVE:NEGATIVE|[574009,574253]|245 HSP 1 e-value: 8.0E-77 bit: 287.0 Len: 169 Query Start:62 Query End:230 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 176 .............................................................tgcgtctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgatagtaaacatttatagacctcaatttgacaccatactttttctatgataaaatgtaacaaatttatttacaacaaatcaaaatct....... .............................................................tgcggctagcttcctagtttgctctttgattttcattgagtataaacagccactctccagttcaattggagagttttttgatgagagtagatatttatagacctcaatttgacaccatacattttctatgataaaatgtaacaaatttatttacaacaaatcgaaatct....... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 9.0E-49 bit: 194.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 4.0E-48 bit: 192.0 Len: 105 Query Start:1 Query End:105 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 219 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtata.................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata.................................................................................................................................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 171 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... tactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 292 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 113 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 8.0E-40 bit: 165.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat..................................................................................................................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat..................................................................................................................................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 190 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:1 Query End:107 Subject Strand: POSITIVE Subject Start: 8 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 157 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:1 Query End:107 Subject Strand: POSITIVE Subject Start: 8 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 196 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat..................................................................................................................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 5.0E-35 bit: 149.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 5.0E-35 bit: 149.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 8.0E-31 bit: 135.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 112 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 48 Subject End: 149 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 7.0E-22 bit: 105.0 Len: 105 Query Start:1 Query End:105 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtata.................................................................................................................................... tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.................................................................................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 7.0E-22 bit: 105.0 Len: 105 Query Start:1 Query End:105 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtata.................................................................................................................................... tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.................................................................................................................................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat..................................................................................................................................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... tactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat..................................................................................................................................... Subject: NC_008533_SPD_1086_SPD_1087|A/G-specific adenine glycosylase:formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1117070,1117397]|328 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 47 Query Start:60 Query End:106 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 134 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 241 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctt-ttcaaactacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003098_spr1108_spr1109|Similar to A/G-specific adenine glycosylase:Formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1109539,1109866]|328 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 47 Query Start:60 Query End:106 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 134 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 241 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctt-ttcaaactacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_1228_SP_1229|A/G-specific adenine glycosylase:formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1161361,1161717]|357 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 47 Query Start:60 Query End:106 Subject Strand: NEGATIVE Subject Start: 118 Subject End: 164 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 270 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaactacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_008533_SPD_0486_SPD_0487|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[494216,494515]|300 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:60 Query End:104 Subject Strand: POSITIVE Subject Start: 245 Subject End: 289 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 96 Subject End: 138 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. Subject: NC_003098_spr0484_spr0485|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[486549,486985]|437 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:60 Query End:104 Subject Strand: POSITIVE Subject Start: 382 Subject End: 426 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 233 Subject End: 275 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 41 Query Start:67 Query End:107 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 153 ..................................................................ctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. ..................................................................ctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 310 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_0560_SP_0561|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[528030,528290]|261 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:60 Query End:104 Subject Strand: POSITIVE Subject Start: 206 Subject End: 250 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 57 Subject End: 99 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................................................................................................................................. Subject: NC_008533_SPD_1384_SPD_1385|cation efflux family protein:ABC transporter, ATP-binding protein|POSITIVE:NEGATIVE|[1405462,1405603]|142 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 103 Query Start:6 Query End:108 Subject Strand: NEGATIVE Subject Start: 35 Subject End: 137 .....ttcgaaaatcaaatt-caaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaac................................................................................................................................. .....ttcgaaaatcaaagtgcaaactatgtcggcttcacattgccg-actcaagtacagcctgtgaccggcttcctaatttgcactttgatttttattgagtataaac................................................................................................................................. Subject: NC_008533_SPD_1201_SPD_1202|phosphotransferase LicD3:Psr protein|NEGATIVE:NEGATIVE|[1231002,1231279]|278 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 227 Subject End: 274 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 124 Subject End: 170 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 1861 Subject End: 1908 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................................................................................................................................. Subject: NC_003098_spr1709_spr1710|Dextransucrase (sucrose 6-glucosyltransferase):ABC transporter membrane spanning permease - multiple sugars|NEGATIVE:NEGATIVE|[1682434,1682790]|357 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 44 Query Start:60 Query End:103 Subject Strand: POSITIVE Subject Start: 314 Subject End: 357 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 209 Subject End: 255 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003098_spr1411_spr1412|hypothetical protein:ABC transporter ATP-binding protein - unknown substrate|POSITIVE:NEGATIVE|[1397931,1398072]|142 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 103 Query Start:6 Query End:108 Subject Strand: NEGATIVE Subject Start: 35 Subject End: 137 .....ttcgaaaatcaaatt-caaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaac................................................................................................................................. .....ttcgaaaatcaaagtgcaaactatgtcggcttcacattgccg-actcaagtacagcctgtgaccggcttcctaatttgcactttgatttttattgagtataaac................................................................................................................................. Subject: NC_003098_spr1225_spr1226|LicD1 paralog:hypothetical protein|NEGATIVE:NEGATIVE|[1223471,1223748]|278 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 227 Subject End: 274 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 124 Subject End: 170 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_2112_SP_2113|maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[2026318,2026608]|291 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:60 Query End:107 Subject Strand: NEGATIVE Subject Start: 132 Subject End: 179 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. ...........................................................cctgcggctagcttcctagtttgcactttgattttcattgagtataaa.................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 284 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_1894_SP_1895|sucrose phosphorylase:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1801040,1801396]|357 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 44 Query Start:60 Query End:103 Subject Strand: POSITIVE Subject Start: 314 Subject End: 357 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 209 Subject End: 255 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_1367_SP_1368|licD3 protein:psr protein|NEGATIVE:NEGATIVE|[1290910,1291187]|278 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 227 Subject End: 274 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 124 Subject End: 170 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 44 Query Start:60 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattgagta...................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 194 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_1552_SP_1553|cation efflux family protein:ABC transporter, ATP-binding protein|POSITIVE:NEGATIVE|[1462490,1462631]|142 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 102 Query Start:6 Query End:107 Subject Strand: NEGATIVE Subject Start: 36 Subject End: 137 .....ttcgaaaatcaaatt-caaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. .....ttcgaaaatcaaagtgcaaactatgtcggcttcacattgccg-actcaagtacagcctgtgaccggcttcctaatttgcactttgatttttattgagtataaa.................................................................................................................................. Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 6.0E-13 bit: 75.8 Len: 50 Query Start:57 Query End:106 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................................................................................................................... ........................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtataa................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta............................................................................................................................................................................................. Subject: NC_008533_SPD_1568_SPD_1569|GTP cyclohydrolase, putative:aquaporin|POSITIVE:NEGATIVE|[1586901, 1587379]|479 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 49 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctaacttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 424 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_008533_SPD_0781_SPD_0782|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[793779,794285]|507 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:60 Query End:100 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 297 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 403 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003098_spr1603_spr1604|hypothetical protein:Aquaporin Z - water channel protein|POSITIVE:NEGATIVE|[1579370,1579848]|479 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 49 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctaacttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 424 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003098_spr0789_spr0790|hypothetical protein:Type I restriction modification enzyme methylase subunit|POSITIVE:POSITIVE|[786248,786754]|507 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:60 Query End:100 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 297 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 403 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_1777_SP_1778|hypothetical protein:aquaporin|POSITIVE:NEGATIVE|[1695666, 1696188]|523 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 49 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ...........................................................cctgcggctaacttcctagtttgctctttgattttcattgagtat..................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 422 Subject End: 468 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcatcttgccgta............................................................................................................................................................................................. Subject: NC_003028_SP_0885_SP_0886|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[834569,835074]|506 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:60 Query End:100 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 297 ...........................................................cctgcgtctagcttcctagtttgctctttgattttcattga......................................................................................................................................... ...........................................................cctgcggctagcttcctagtttgctctttgattttcattga......................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 356 Subject End: 402 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. Subject: NC_008533_SPD_0803_SPD_0804|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[820178,821149]|972 HSP 1 e-value: 9.0E-12 bit: 71.9 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 184 tactcttcgaaaatcaaatt-caaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactattcaaaaatcaaagtgcaaactatgtcaacttcacattgccg-actaaattacagcctgtggctggcttcctagtttgcactttgatttttattgagtataaa.................................................................................................................................. Subject: NC_003098_spr0810_spr0811|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[812648,813000]|353 HSP 1 e-value: 9.0E-12 bit: 71.9 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 184 tactcttcgaaaatcaaatt-caaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. tactattcaaaaatcaaagtgcaaactatgtcaacttcacattgccg-actaaattacagcctgtggctggcttcctagtttgcactttgatttttattgagtataaa.................................................................................................................................. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 546 Subject End: 593 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgta............................................................................................................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................................................................................................................................. HSP 2 e-value: 9.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtat..................................................................................................................................... ........................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat..................................................................................................................................... Subject: NC_008533_SPD_1528_SPD_1530|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:POSITIVE|[1550754,1552061]|1308 HSP 1 e-value: 4.0E-11 bit: 69.9 Len: 51 Query Start:57 Query End:107 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 162 ........................................................cagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa.................................................................................................................................. ........................................................cagcctacggctagcttcctagttcgctctttgcttttcattgagtataaa.................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 309 tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgt.............................................................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgt.............................................................................................................................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCUUCACCUUGCCGUACUCAAGUACAGCCUGCGUCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAACAGCCACUCUCCAGUUCAAUUGGAGAGUUUUUUGAUGAUAGUAAACAUUUAUAGACCUCAAUUUGACACCAUACUUUUUCUAUGAUAAAAUGUAACAAAUUUAUUUACAACAAAUCAAAAUCU (((((...((((((((((..(((((...(..((((..(((..((.((((....)))).))..).))..))))..)..)))))...))))))))))...))))).........((((((((((...)))))))))).(((((((....(((((...(((((((........((....)).......)))))))..((((.......)))).))))).....)))))))... (-52.16) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAUUUUGAUUUGUUGUAAAUAAAUUUGUUACAUUUUAUCAUAGAAAAAGUAUGGUGUCAAAUUGAGGUCUAUAAAUGUUUACUAUCAUCAAAAAACUCUCCAAUUGAACUGGAGAGUGGCUGUUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGACGCAGGCUGUACUUGAGUACGGCAAGGUGAAGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUA ((((((..(((((.(((((.........)))))...(((((((.......))))))).)))))..))))))........................((((((((.......)))))))).........(((((..(((((((((((...((((((((..((((...(((..(((((((....)))))))...))).))))..).)))))))..)))))))))))..))))) (-70.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 924 90 41 213 164 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 896 90 41 195 146 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 896 90 41 195 146 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 896 90 41 195 146 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 845 90 41 230 181 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 772 60 11 230 181 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 740 100 53 94 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 701 100 53 94 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 622 100 53 94 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 602 100 53 94 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 574 45 1 214 168 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 572 110 67 206 164 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 555 35 1 231 197 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 539 48 1 199 153 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 523 100 53 94 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 522 46 1 173 124 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 490 41 1 212 166 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 430 48 17 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 415 41 1 204 158 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 360 34 1 230 198 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 896 90 41 80 31 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 896 90 41 80 31 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 896 90 41 80 31 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 828 90 41 77 23 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 818 90 41 77 28 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 818 90 41 56 7 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 768 100 51 51 2 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 742 100 52 49 1 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 740 100 53 87 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 709 100 53 83 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 701 100 53 54 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 676 48 1 147 101 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 665 100 53 87 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 661 100 53 73 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 650 109 61 63 14 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 622 109 63 55 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 615 104 64 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 543 100 53 87 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 522 46 1 77 28 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE 468 119 75 43 1 smit:SMT_1767|3end_oxidoreductase,_short_chain_dehydrogenase/reductase_family_1743243..1743393_NEGATIVE