Origin IGS: ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatgtgtctcctttttcttaaatttccgagaagtctctcgttgttacggaatatattacaacaaaacaaaaggacttgcaagaaatttgctcagagtttatttgaaaattataaaattgctgaaacttagtcacgtgctactggaaaagtaagaactgttttttggattctggtttgctttgaagtaagaaatagaattggttgcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtattcttatattcacttgtaataaagtttaatagatggtaaaatagacgagtgaaaaaaagacaaaacaaagcaaaaaataatctactgtggcagtatggtctaggg Mask Tandem Repeat Region ================================================ ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Find is-nt database================================================ Query_seq: SMT_826:SMT_827|SMT_826:SMT_827:hypothetical protein:hypothetical protein:<-->:750113..750528 416 ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_826:SMT_827|SMT_826:SMT_827:hypothetical protein:hypothetical protein:<-->:750113..750528 416 ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_826:SMT_827|SMT_826:SMT_827:hypothetical protein:hypothetical protein:<-->:750113..750528 416 ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Predict ORF larger than 30AA ================================================ Protein_Len: 45 Strand: + Start: 38 End: 172 ..................................... M F C L F F T R L F Y H L L N F I T S E Y K N T L R K S N S N H V S F A L P Y S S T T C G .................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 93 End: 287 ............................................................................................ M N I R I L F E N Q I Q T T S A S P C R T P V Q P A A S F L V C S L I F I E Y K Q P I L F L T S K Q T R I Q K T V L T F ................................................................................................................................. Protein_Len: 38 Strand: + Start: 283 End: 396 .......................................................................................................................................................................................................................................................................................... M T K F Q Q F Y N F Q I N S E Q I S C K S F C F V V I Y S V T T R D F S E I .................... Protein_Len: 42 Strand: - Start: 290 End: 415 ................................................................................................................................................................................................................................................................................................. T E A I K Y N E F L S Q A F K K C T R K N Q Q L I N R L L S L S R P F K L F L L C M . Protein_Len: 33 Strand: - Start: 268 End: 366 ........................................................................................................................................................................................................................................................................... K E L L V H S L K L L K I I K L Y V R L L N R A L G K T K N Y Y M .................................................. Protein_Len: 41 Strand: - Start: 128 End: 250 ............................................................................................................................... V V D A E G Q R V G T C G A A L K R T Q E K I K M S Y L C G I R N R V E F C V L M ...................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 70 End: 159 ..................................................................... W R N F K I V L S Y L F V R R F D F E F W T L K A K G Y E M ................................................................................................................................................................................................................................................................. ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 64 End: 93 ...............................................................CTTGTAATAAAGTTTAATAGATGGTAAAAT................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 335 End: 364 ..............................................................................................................................................................................................................................................................................................................................................CTTGCAAGTCCTTTTGTTTTGTTGTAATAT.................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_826:SMT_827|SMT_826:SMT_827:hypothetical protein:hypothetical protein:<-->:750113..750528 416 ccctagaccatactgccacagtagattattttttgctttgttttgtctttttttcactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc Intra-Species Hit: Count: 39 Min: 1 Max: 416 Len: 416 Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 0.0 bit: 718.0 Len: 362 Query Start:55 Query End:416 Subject Strand: POSITIVE Subject Start: 55 Subject End: 416 ......................................................cactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc ......................................................cactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagcaaccaattctatttcttacttcaaagcaaaccagaatccaaaaaacagttcttacttttccagtagcacgtgactaagtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 106 Query Start:106 Query End:211 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 204 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 109 Query Start:104 Query End:212 Subject Strand: POSITIVE Subject Start: 223 Subject End: 331 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 107 Query Start:106 Query End:212 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 209 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 109 Query Start:104 Query End:212 Subject Strand: NEGATIVE Subject Start: 23 Subject End: 131 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 107 Query Start:106 Query End:212 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 181 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 107 Query Start:106 Query End:212 Subject Strand: NEGATIVE Subject Start: 556 Subject End: 662 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 106 Query Start:106 Query End:211 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 109 Query Start:104 Query End:212 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 126 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:104 Query End:211 Subject Strand: POSITIVE Subject Start: 151 Subject End: 258 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 180 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 102 Query Start:104 Query End:205 Subject Strand: POSITIVE Subject Start: 13 Subject End: 114 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 102 Query Start:104 Query End:205 Subject Strand: POSITIVE Subject Start: 13 Subject End: 114 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 106 Query Start:106 Query End:211 Subject Strand: POSITIVE Subject Start: 50 Subject End: 155 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 102 Query Start:104 Query End:205 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 102 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 176 Subject End: 280 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 191 Subject End: 295 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 104 Query Start:105 Query End:208 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 104 Query Start:108 Query End:211 Subject Strand: POSITIVE Subject Start: 39 Subject End: 142 ...........................................................................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. ...........................................................................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataa............................................................................................................................................................................................................. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 108 Query Start:104 Query End:211 Subject Strand: POSITIVE Subject Start: 103 Subject End: 210 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 109 Query Start:104 Query End:212 Subject Strand: POSITIVE Subject Start: 6 Subject End: 114 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 218 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 104 Query Start:108 Query End:211 Subject Strand: POSITIVE Subject Start: 55 Subject End: 158 ...........................................................................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. ...........................................................................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 19 Subject End: 122 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 108 Query Start:106 Query End:213 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 227 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagc........................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataagc........................................................................................................................................................................................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 106 Query Start:106 Query End:211 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 154 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 109 Query Start:106 Query End:214 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataagca.......................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataagca.......................................................................................................................................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 360 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 104 Query Start:105 Query End:208 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ ........................................................................................................atactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta................................................................................................................................................................................................................ Subject: smit_SMT_1623_SMT_1624|K03498 trk system potassium uptake protein TrkH:formate acetyltransferase|POSITIVE:NEGATIVE|[1611176, 1611510]|335 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 44 Query Start:162 Query End:205 Subject Strand: POSITIVE Subject Start: 149 Subject End: 192 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 49 Subject End: 94 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaataaaaat---accacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:162 Query End:208 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 198 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ .................................................................................................................................................................caaccttcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 205 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... .................................................................................................................................................................caacctgcggctagcttcctagtttggtctttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 36 Query Start:105 Query End:140 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 271 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagct.................................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagct.................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 50 Query Start:104 Query End:153 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 185 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 80 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... .................................................................................................................................................................caacctgcgggtagcttcatagtttgctttttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 164 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 45 Query Start:165 Query End:209 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 58 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcggctagttttctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: smit_SMT_1871_SMT_1872|modification methylase, HemK family:K03217 preprotein translocase YidC subunit|NEGATIVE:NEGATIVE|[1830592,1830972]|381 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 45 Query Start:165 Query End:209 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 188 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcgactagcttcctagtttgctctttgattttcattgagkat............................................................................................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 338 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: smit_SMT_775_SMT_776|alpha-acetolactate decarboxylase:hypothetical protein|NEGATIVE:POSITIVE|[686063,686341]|279 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 50 Query Start:162 Query End:211 Subject Strand: NEGATIVE Subject Start: 16 Subject End: 65 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .................................................................................................................................................................caacctgcggctcgctkcmtagtttgctttttgattttcattgagtataa............................................................................................................................................................................................................. HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 50 Query Start:104 Query End:153 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 155 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 44 Min: 1 Max: 416 Len: 416 Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 106 Query Start:106 Query End:211 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_008533_SPD_1374_SPD_1375|hypothetical protein:NADPH-dependent FMN reductase, putative|NEGATIVE:POSITIVE|[1386633,1387009]|377 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 161 Query Start:256 Query End:416 Subject Strand: POSITIVE Subject Start: 216 Subject End: 377 ...............................................................................................................................................................................................................................................................aaacagttcttacttttccagtagcacgtgacta-agtttcagcaattttataattttcaaataaactctgagcaaatttcttgcaagtccttttgttttgttgtaatatattccgtaacaacgagagacttctcggaaatttaagaaaaaggagacacatc ...............................................................................................................................................................................................................................................................aaacagttcttactttttcagtcacaaatgactagagtttccgaaattttacaattttcaaataaactctgagcaaatttcttgcaagttcttttgttttgttgtaatatattttataacaacgagagagttctcgaaattttaagaaaaaggagacacatc HSP 2 e-value: 1.0E-27 bit: 125.0 Len: 87 Query Start:55 Query End:141 Subject Strand: POSITIVE Subject Start: 55 Subject End: 140 ......................................................cactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagctt................................................................................................................................................................................................................................................................................... ......................................................cactcgtctattttaccatctattaagctttattacaagtgaatataagaatactcttcgaaaatc-tcttcaaaccatgtcagctt................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 107 Query Start:104 Query End:210 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 221 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtata.............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata.............................................................................................................................................................................................................. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 104 Query Start:105 Query End:208 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 172 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ ........................................................................................................atactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 293 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 114 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 106 Query Start:106 Query End:211 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 85 Subject End: 192 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: POSITIVE Subject Start: 6 Subject End: 113 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 159 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: POSITIVE Subject Start: 6 Subject End: 113 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 108 Query Start:104 Query End:211 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 198 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .......................................................................................................aatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 106 Query Start:106 Query End:211 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 106 Query Start:106 Query End:211 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .........................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............................................................................................................................................................................................................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 113 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 104 Query Start:105 Query End:208 Subject Strand: POSITIVE Subject Start: 47 Subject End: 149 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ Subject: NC_003028_SP_1545_SP_1546|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1453128,1453423]|296 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 87 Query Start:55 Query End:141 Subject Strand: POSITIVE Subject Start: 55 Subject End: 140 ......................................................cactcgtctattttaccatctattaaactttattacaagtgaatataagaatactcttcgaaaatcaaattcaaaccacgtcagctt................................................................................................................................................................................................................................................................................... ......................................................cactcgtctattttaccatctattaagctttattacaagtgaatataagaatactcttcgaaaatc-tcttcaaaccacgtcagctt................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 80 Query Start:256 Query End:335 Subject Strand: POSITIVE Subject Start: 216 Subject End: 296 ...............................................................................................................................................................................................................................................................aaacagttcttacttttccagtagcacgtgacta-agtttcagcaattttataattttcaaataaactctgagcaaatttc................................................................................. ...............................................................................................................................................................................................................................................................aaacagttcttactttttcagtcacaaatgattagagtttccgaaattttacaattttcaaataaactctgagcaaatttc................................................................................. HSP 3 e-value: 1.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... ccctagaccatactgccacagtagatta.................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat............................................................................................................................................................................................................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat............................................................................................................................................................................................................... Subject: NC_003098_spr1709_spr1710|Dextransucrase (sucrose 6-glucosyltransferase):ABC transporter membrane spanning permease - multiple sugars|NEGATIVE:NEGATIVE|[1682434,1682790]|357 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 47 Query Start:162 Query End:208 Subject Strand: POSITIVE Subject Start: 311 Subject End: 357 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 208 Subject End: 255 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1894_SP_1895|sucrose phosphorylase:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1801040,1801396]|357 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 47 Query Start:162 Query End:208 Subject Strand: POSITIVE Subject Start: 311 Subject End: 357 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 208 Subject End: 255 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 47 Query Start:162 Query End:208 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 47 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 195 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_2112_SP_2113|maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[2026318,2026608]|291 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:162 Query End:211 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 182 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. .................................................................................................................................................................caacctgcggctagcttcctagtttgcactttgattttcattgagtataa............................................................................................................................................................................................................. HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 50 Query Start:104 Query End:153 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 286 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 105 Query Start:106 Query End:210 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtata.............................................................................................................................................................................................................. .........................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.............................................................................................................................................................................................................. Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 105 Query Start:106 Query End:210 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtata.............................................................................................................................................................................................................. .........................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.............................................................................................................................................................................................................. Subject: NC_008533_SPD_1568_SPD_1569|GTP cyclohydrolase, putative:aquaporin|POSITIVE:NEGATIVE|[1586901, 1587379]|479 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:163 Query End:209 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 51 ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ..................................................................................................................................................................aacctgcggctaacttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 425 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0781_SPD_0782|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[793779,794285]|507 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:163 Query End:205 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 299 ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 404 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1603_spr1604|hypothetical protein:Aquaporin Z - water channel protein|POSITIVE:NEGATIVE|[1579370,1579848]|479 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:163 Query End:209 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 51 ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ..................................................................................................................................................................aacctgcggctaacttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 425 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0789_spr0790|hypothetical protein:Type I restriction modification enzyme methylase subunit|POSITIVE:POSITIVE|[786248,786754]|507 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:163 Query End:205 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 299 ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 404 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0429_spr0430|hypothetical protein:ABC transporter ATP-binding protein - cobalt transport|POSITIVE:POSITIVE|[429872,430191]|320 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:162 Query End:208 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 47 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ .................................................................................................................................................................caacctgcggctaacttcctagtttgctctttgattttcattgagta................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 150 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacatcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:169 Query End:211 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 156 ........................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. ........................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtataa............................................................................................................................................................................................................. HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 50 Query Start:104 Query End:153 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 312 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0885_SP_0886|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[834569,835074]|506 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:163 Query End:205 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 299 ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... ..................................................................................................................................................................aacctgcggctagcttcctagtttgctctttgattttcattga................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 356 Subject End: 403 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 50 Query Start:104 Query End:153 Subject Strand: POSITIVE Subject Start: 544 Subject End: 593 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:169 Query End:209 Subject Strand: POSITIVE Subject Start: 655 Subject End: 695 ........................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ........................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: NC_008533_SPD_1201_SPD_1202|phosphotransferase LicD3:Psr protein|NEGATIVE:NEGATIVE|[1231002,1231279]|278 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:165 Query End:209 Subject Strand: POSITIVE Subject Start: 230 Subject End: 274 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcggctagcttcctagtttgcactttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 123 Subject End: 170 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 1860 Subject End: 1908 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:165 Query End:209 Subject Strand: POSITIVE Subject Start: 1966 Subject End: 2010 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... Subject: NC_003098_spr1225_spr1226|LicD1 paralog:hypothetical protein|NEGATIVE:NEGATIVE|[1223471,1223748]|278 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:165 Query End:209 Subject Strand: POSITIVE Subject Start: 230 Subject End: 274 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcggctagcttcctagtttgcactttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 123 Subject End: 170 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1367_SP_1368|licD3 protein:psr protein|NEGATIVE:NEGATIVE|[1290910,1291187]|278 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:165 Query End:209 Subject Strand: POSITIVE Subject Start: 230 Subject End: 274 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcggctagcttcctagtttgcactttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: POSITIVE Subject Start: 123 Subject End: 170 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0095_SP_0096|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[97857,98130]|274 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:165 Query End:209 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 97 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... ....................................................................................................................................................................cctgcagctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:105 Query End:153 Subject Strand: NEGATIVE Subject Start: 157 Subject End: 204 ........................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... ........................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 48 Query Start:165 Query End:212 Subject Strand: POSITIVE Subject Start: 162 Subject End: 209 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ ....................................................................................................................................................................cctgcggctagttttctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ HSP 2 e-value: 1.0E-12 bit: 75.8 Len: 50 Query Start:104 Query End:153 Subject Strand: POSITIVE Subject Start: 53 Subject End: 102 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 138 .................................................................................................................................................................caacctgcggctagcttcctagtttgctctttgattttcattgagtat............................................................................................................................................................................................................... .................................................................................................................................................................caacctgcggctagtttcctagtttgctctttgatttttattgagtat............................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 420 .........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta....................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 50 Query Start:104 Query End:153 Subject Strand: POSITIVE Subject Start: 53 Subject End: 102 .......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgta....................................................................................................................................................................................................................................................................... .......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta....................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:165 Query End:212 Subject Strand: POSITIVE Subject Start: 162 Subject End: 209 ....................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataag............................................................................................................................................................................................................ ....................................................................................................................................................................cctgcggctagttttctagtttgctctttgatttttattgagtataag............................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCCUAGACCAUACUGCCACAGUAGAUUAUUUUUUGCUUUGUUUUGUCUUUUUUUCACUCGUCUAUUUUACCAUCUAUUAAACUUUAUUACAAGUGAAUAUAAGAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCUUCGCCUUGCCGUACUCCAGUACAACCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAGCAACCAAUUCUAUUUCUUACUUCAAAGCAAACCAGAAUCCAAAAAACAGUUCUUACUUUUCCAGUAGCACGUGACUAAGUUUCAGCAAUUUUAUAAUUUUCAAAUAAACUCUGAGCAAAUUUCUUGCAAGUCCUUUUGUUUUGUUGUAAUAUAUUCCGUAACAACGAGAGACUUCUCGGAAAUUUAAGAAAAAGGAGACACAUC .(((......(((((...)))))((((....(((((((((.....((((...((((((.((...........................)).))))))...))))((((((...((((((((((..(((((...(..((((..(((..((.((((....)))).....))))).))))..)..)))))...))))))))))...)))))).........................)))))))))....))))..........((((((..(((((((.((...(.((((.....((((....(((((.........)))))..))))((((.....)))).))))).....(((((((((.((.......)).)))))))))..)).)).)))))..))))))..)))......... (-78.73) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAUGUGUCUCCUUUUUCUUAAAUUUCCGAGAAGUCUCUCGUUGUUACGGAAUAUAUUACAACAAAACAAAAGGACUUGCAAGAAAUUUGCUCAGAGUUUAUUUGAAAAUUAUAAAAUUGCUGAAACUUAGUCACGUGCUACUGGAAAAGUAAGAACUGUUUUUUGGAUUCUGGUUUGCUUUGAAGUAAGAAAUAGAAUUGGUUGCUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGUUGUACUGGAGUACGGCAAGGCGAAGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUCUUAUAUUCACUUGUAAUAAAGUUUAAUAGAUGGUAAAAUAGACGAGUGAAAAAAAGACAAAACAAAGCAAAAAAUAAUCUACUGUGGCAGUAUGGUCUAGGG ..((((..(((((((............(((....)))..(((((.............))))).....)))))))..))))..........((((..(((((.(....)..)))))....))))..((((((((..((((((((((..........((((((((((..(((.((....))..))).)))))))))).(((..((((((.(((((..(((((((((((...((((((((..((((.(((....(((((((....)))))))..)))..))))..).)))))))..)))))))))))..))))).((((.(.(((((((((.......((((........))))....))))))))).).)))).......))))))..)))..))))..))))))...))).))))). (-108.02) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 939 190 141 208 159 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 911 190 141 190 141 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 911 190 141 190 141 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 911 190 141 190 141 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 860 190 141 225 176 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 824 50 1 141 92 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 796 208 162 97 51 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 778 160 111 225 176 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 753 209 162 98 51 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 752 209 162 98 51 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 689 209 162 201 154 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 684 210 162 99 51 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 674 209 162 98 51 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 613 146 105 215 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 572 150 105 196 152 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 556 148 104 173 122 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 511 153 122 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 499 149 105 207 165 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 424 149 105 199 157 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 417 180 132 184 124 smit:SMT_1201|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1163920..1164150_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 911 190 141 75 26 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 911 190 141 75 26 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 911 190 141 75 26 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 836 190 141 72 23 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 836 190 141 51 2 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 828 209 162 87 40 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 809 209 162 91 44 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 792 210 162 58 10 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 761 210 161 54 5 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 757 210 161 56 7 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 752 209 162 58 11 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 730 209 162 77 30 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 722 209 165 91 47 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 709 150 105 144 100 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 695 209 169 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 694 206 162 88 44 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 667 209 168 46 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 624 209 162 91 44 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 556 148 104 77 26 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE 519 148 102 77 29 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE