Origin IGS: atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatatgtaattcgatattattcgagcaaataatgtatactactgtaaataacactacaaatatatgagtataaaataatacagatgacgacttataaccatctataacgacaaaaataattgataatagtaacagaaaaaatgtaggtgctaaaatctttttaataaattgcttgtatcgattaaagcatagttcaaaactaatgtttcctctcttcttattatgcgttaataagtgaatcagcaactcaaaaaacacactacctacagaaagaactaaaacttcgcttattggaacatttagaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gcacaatattgcacagctatatgggctatcgctagatttttatagaaaaggggttagttgatggaaagtggtgaatttaggctaattttagctctttttatatctttttttataataggtgtgattggaatagttctaaatgttccaataagcgaagttttagttctttctgtaggtagtgtgttttttgagttgctgattcacttattaacgcataataagaagagaggaaacattagttttgaactatgctttaatcgatacaagcaatttattaaaaagattttagcacctacattttttctgttactattatcaattatttttgtcgttatagatggttataagtcgtcatctgtattattttatactcatatatttgtagtgttatttacagtagtatacattatttgctcgaataatatcgaattacatatttcaaaaaaagaatgagttagcgttttacttatagtatataataataaattattttgagacatagtagtaaagtgattgagctatagatatgatgaggatggaaatatggagattgttataatgaacatagttaattatctcttgctaaagattgaatggatagtaagtaatatctttataaaaatgagcatactttggatgcttatttggtttctatactatttaaagagtgatttagcaatgtatttcttgttttttggaaatggctttttattattgctaataatttttcgatttgcactgtatcaaattaaactagtaatgcagaatgatattaactaattatgtctaaatcatatttttggtaatcagattataatcattctggactttttcaagactttttgataactccgataatgtgtctatttaaatttgaagataagtggagttagcaacatgtaaatactttgtgataaaaatcgattttgttttgctatactgaacttgtcaaggttataatctgacaaaagatttctattatatacgagatattcatcatggatacaaaaacaatagaacaagttaatgtgttcaaagctgatgctctttctattattgtgttgaaggaggtaaaaatgat Mask Tandem Repeat Region ================================================ atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatatgtaattcgatattattcgagcaaataatgtatactactgtaaataacactacaaatatatgagtataaaataatacagatgacgacttataaccatctataacgacaaaaataattgataatagtaacagaaaaaatgtaggtgctaaaatctttttaataaattgcttgtatcgattaaagcatagttcaaaactaatgtttcctctcttcttattatgcgttaataagtgaatcagcaactcaaaaaacacactacctacagaaagaactaaaacttcgcttattggaacatttagaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Find is-nt database================================================ Query_seq: SMT_807:SMT_808|SMT_807:SMT_808:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-<-:716906..717986 1081 atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatatgtaattcgatattattcgagcaaataatgtatactactgtaaataacactacaaatatatgagtataaaataatacagatgacgacttataaccatctataacgacaaaaataattgataatagtaacagaaaaaatgtaggtgctaaaatctttttaataaattgcttgtatcgattaaagcatagttcaaaactaatgtttcctctcttcttattatgcgttaataagtgaatcagcaactcaaaaaacacactacctacagaaagaactaaaacttcgcttattggaacatttagaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_807:SMT_808|SMT_807:SMT_808:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-<-:716906..717986 1081 atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatatgtaattcgatattattcgagcaaataatgtatactactgtaaataacactacaaatatatgagtataaaataatacagatgacgacttataaccatctataacgacaaaaataattgataatagtaacagaaaaaatgtaggtgctaaaatctttttaataaattgcttgtatcgattaaagcatagttcaaaactaatgtttcctctcttcttattatgcgttaataagtgaatcagcaactcaaaaaacacactacctacagaaagaactaaaacttcgcttattggaacatttagaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_807:SMT_808|SMT_807:SMT_808:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-<-:716906..717986 1081 atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatatgtaattcgatattattcgagcaaataatgtatactactgtaaataacactacaaatatatgagtataaaataatacagatgacgacttataaccatctataacgacaaaaataattgataatagtaacagaaaaaatgtaggtgctaaaatctttttaataaattgcttgtatcgattaaagcatagttcaaaactaatgtttcctctcttcttattatgcgttaataagtgaatcagcaactcaaaaaacacactacctacagaaagaactaaaacttcgcttattggaacatttagaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 647 Max: 946 Len: 300 Subject: UniRef90_Q03J43 Cluster: Uncharacterized conserved protein; n=3; Streptococcus thermophilus|Rep: Uncharacterized conserved protein - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 6.0E-6 bit: 54.7 Len: 300 Query Start:647 Query End:946 Subject Strand: null Subject Start: 25 Subject End: 123 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L N V P I S E V L V L S V G S V F F E L L I H L L T H N K K R G N I S F E L C F N R Y K Q F I K K I L A P T X X X X X X X X X X X X I D G Y K S S S V L F Y T H I F V V L F T V V Y I I C S N N I E L H ....................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L G I P L S K I L V L T V L S S I A E V L M H L V L G K K S K V T L S D K E I W H Q Y F L F V K K T L W L S I L F V G I F L F Y T L T K S - D S F M L Y F Y W H I F V L F H C L G Y I I C L N N I K M N ....................................................................................................................................... atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Predict ORF larger than 30AA ================================================ Protein_Len: 48 Strand: + Start: 1 End: 144 M I F T S F N T I I E R A S A L N T L T C S I V F V S M M N I S Y I I E I F C Q I I T L T S S V ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: + Start: 39 End: 215 ...................................... M S F E H I N L F Y C F C I H D E Y L V Y N R N L L S D Y N L D K F S I A K Q N R F L S Q S I Y M L L T P L I F K F K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 343 End: 438 ...................................................................................................................................................................................................................................................................................................................................................... M Q I E K L L A I I K S H F Q K T R N T L L N H S L N S I E T K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 582 End: 707 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S Q N N L L L Y T I S K T L T H S F F E I C N S I L F E Q I M Y T T V N N T T N I ...................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 747 End: 878 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T T K I I D N S N R K N V G A K I F L I N C L Y R L K H S S K L M F P L F L L C V N K ........................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 874 End: 969 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S E S A T Q K T H Y L Q K E L K L R L L E H L E L F Q S H L L ................................................................................................................ Protein_Len: 48 Strand: + Start: 882 End: 1025 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S N S K N T L P T E R T K T S L I G T F R T I P I T P I I K K D I K R A K I S L N S P L S I N ........................................................ Protein_Len: 60 Strand: - Start: 632 End: 1024 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I N G R K K N H T L L H I L L E F F V S G V S L V L V E S I P V N L V I G I V G I I F F S I F L A L I L R F E G S E M M ......................................................... Protein_Len: 60 Strand: - Start: 305 End: 568 ................................................................................................................................................................................................................................................................................................................ F L F Y M A L D S K L Y Y L F W I L M W L I S M K I F I N S V I W E I K L L L Y N V I N M I V I E M N G D E D Y R Y S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 3 End: 110 .. M K V E K L V I I S L A D A K F V N V Q E I T K T D M I F I E Y I I S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 966 End: 995 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCTCTTTTTATATCTTTTTTTATAAT...................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 129 End: 158 ................................................................................................................................CTTGACAAGTTCAGTATAGCAAAACAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 941 End: 970 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAACTATTCCAATCACACCTATTAT............................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_807:SMT_808|SMT_807:SMT_808:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-<-:716906..717986 1081 atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Intra-Species Hit: Count: 1 Min: 1 Max: 1081 Len: 1081 Subject: smit_SMT_807_SMT_808|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[716906,717986]|1081 HSP 1 e-value: 0.0 bit: 1281.0 Len: 646 Query Start:1 Query End:646 Subject Strand: POSITIVE Subject Start: 1 Subject End: 646 atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaat................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcatttttacctccttcaacacaataatagaaagagcatcagctttgaacacattaacttgttctattgtttttgtatccatgatgaatatctcgtatataatagaaatcttttgtcagattataaccttgacaagttcagtatagcaaaacaaaatcgatttttatcacaaagtatttacatgttgctaactccacttatcttcaaatttaaatagacacattatcggagttatcaaaaagtcttgaaaaagtccagaatgattataatctgattaccaaaaatatgatttagacataattagttaatatcattctgcattactagtttaatttgatacagtgcaaatcgaaaaattattagcaataataaaaagccatttccaaaaaacaagaaatacattgctaaatcactctttaaatagtatagaaaccaaataagcatccaaagtatgctcatttttataaagatattacttactatccattcaatctttagcaagagataattaactatgttcattataacaatctccatatttccatcctcatcatatctatagctcaatcactttactactatgtctcaaaataatttattattatatactataagtaaaacgctaactcattctttttttgaaat................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-57 bit: 226.0 Len: 135 Query Start:947 Query End:1081 Subject Strand: POSITIVE Subject Start: 947 Subject End: 1081 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aactattccaatcacacctattatnnnnnnngatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aactattccaatcacacctattataaaaaaagatataaaaagagctaaaattagcctaaattcaccactttccatcaactaaccccttttctataaaaatctagcgatagcccatatagctgtgcaatattgtgc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCAUUUUUACCUCCUUCAACACAAUAAUAGAAAGAGCAUCAGCUUUGAACACAUUAACUUGUUCUAUUGUUUUUGUAUCCAUGAUGAAUAUCUCGUAUAUAAUAGAAAUCUUUUGUCAGAUUAUAACCUUGACAAGUUCAGUAUAGCAAAACAAAAUCGAUUUUUAUCACAAAGUAUUUACAUGUUGCUAACUCCACUUAUCUUCAAAUUUAAAUAGACACAUUAUCGGAGUUAUCAAAAAGUCUUGAAAAAGUCCAGAAUGAUUAUAAUCUGAUUACCAAAAAUAUGAUUUAGACAUAAUUAGUUAAUAUCAUUCUGCAUUACUAGUUUAAUUUGAUACAGUGCAAAUCGAAAAAUUAUUAGCAAUAAUAAAAAGCCAUUUCCAAAAAACAAGAAAUACAUUGCUAAAUCACUCUUUAAAUAGUAUAGAAACCAAAUAAGCAUCCAAAGUAUGCUCAUUUUUAUAAAGAUAUUACUUACUAUCCAUUCAAUCUUUAGCAAGAGAUAAUUAACUAUGUUCAUUAUAACAAUCUCCAUAUUUCCAUCCUCAUCAUAUCUAUAGCUCAAUCACUUUACUACUAUGUCUCAAAAUAAUUUAUUAUUAUAUACUAUAAGUAAAACGCUAACUCAUUCUUUUUUUGAAAUAUGUAAUUCGAUAUUAUUCGAGCAAAUAAUGUAUACUACUGUAAAUAACACUACAAAUAUAUGAGUAUAAAAUAAUACAGAUGACGACUUAUAACCAUCUAUAACGACAAAAAUAAUUGAUAAUAGUAACAGAAAAAAUGUAGGUGCUAAAAUCUUUUUAAUAAAUUGCUUGUAUCGAUUAAAGCAUAGUUCAAAACUAAUGUUUCCUCUCUUCUUAUUAUGCGUUAAUAAGUGAAUCAGCAACUCAAAAAACACACUACCUACAGAAAGAACUAAAACUUCGCUUAUUGGAACAUUUAGAACUAUUCCAAUCACACCUAUUAUAAAAAAAGAUAUAAAAAGAGCUAAAAUUAGCCUAAAUUCACCACUUUCCAUCAACUAACCCCUUUUCUAUAAAAAUCUAGCGAUAGCCCAUAUAGCUGUGCAAUAUUGUGC ....................(((((((((((((((.(((..(((...(((((........)))))....)))..))).....(((((.((((((..(.((((((((........((((((.........))))))(((((......((.........(((((((....(((...(((((......(((.(((((((................................))))))).)))......(((((..(((.(((((((((..(((.(((((((....................))))))))))..)))))))))....)))..)))))...))))).))).)))))))....((((((....))))))...))...((((((...............(((((.(.(((((..((((...((((((.....((((.(((((.......))))).))))...(((((((...................)))))))..((((((.....(((((((((..............................................................((((...........(((((((.((((((....(((.............(((.......)))...((((.(((((......))))).......(((.(((....))).)))....))))....))).)))))).))))))).(((((............))))).....))))....(((((((((..(((((......(((...((((......)))).)))......)))))..))))))))).)))))))))..((((....))))..))))))....)))))).))))..))))).).)))))..........................(((.......))).....))))))......))))).............)))))))).)...))))))....((.((((....))))))...............))))).........)))))))).........((.(((((.......)))))))..))))))). (-166.11) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCACAAUAUUGCACAGCUAUAUGGGCUAUCGCUAGAUUUUUAUAGAAAAGGGGUUAGUUGAUGGAAAGUGGUGAAUUUAGGCUAAUUUUAGCUCUUUUUAUAUCUUUUUUUAUAAUAGGUGUGAUUGGAAUAGUUCUAAAUGUUCCAAUAAGCGAAGUUUUAGUUCUUUCUGUAGGUAGUGUGUUUUUUGAGUUGCUGAUUCACUUAUUAACGCAUAAUAAGAAGAGAGGAAACAUUAGUUUUGAACUAUGCUUUAAUCGAUACAAGCAAUUUAUUAAAAAGAUUUUAGCACCUACAUUUUUUCUGUUACUAUUAUCAAUUAUUUUUGUCGUUAUAGAUGGUUAUAAGUCGUCAUCUGUAUUAUUUUAUACUCAUAUAUUUGUAGUGUUAUUUACAGUAGUAUACAUUAUUUGCUCGAAUAAUAUCGAAUUACAUAUUUCAAAAAAAGAAUGAGUUAGCGUUUUACUUAUAGUAUAUAAUAAUAAAUUAUUUUGAGACAUAGUAGUAAAGUGAUUGAGCUAUAGAUAUGAUGAGGAUGGAAAUAUGGAGAUUGUUAUAAUGAACAUAGUUAAUUAUCUCUUGCUAAAGAUUGAAUGGAUAGUAAGUAAUAUCUUUAUAAAAAUGAGCAUACUUUGGAUGCUUAUUUGGUUUCUAUACUAUUUAAAGAGUGAUUUAGCAAUGUAUUUCUUGUUUUUUGGAAAUGGCUUUUUAUUAUUGCUAAUAAUUUUUCGAUUUGCACUGUAUCAAAUUAAACUAGUAAUGCAGAAUGAUAUUAACUAAUUAUGUCUAAAUCAUAUUUUUGGUAAUCAGAUUAUAAUCAUUCUGGACUUUUUCAAGACUUUUUGAUAACUCCGAUAAUGUGUCUAUUUAAAUUUGAAGAUAAGUGGAGUUAGCAACAUGUAAAUACUUUGUGAUAAAAAUCGAUUUUGUUUUGCUAUACUGAACUUGUCAAGGUUAUAAUCUGACAAAAGAUUUCUAUUAUAUACGAGAUAUUCAUCAUGGAUACAAAAACAAUAGAACAAGUUAAUGUGUUCAAAGCUGAUGCUCUUUCUAUUAUUGUGUUGAAGGAGGUAAAAAUGAU (((((.((((..((((......(((((((((((......(((((((((((((........((((((((.(.((((.(((...))).)))).).)))))))).)))))))))))))........(((((((((........))))))))).))))).....))))))...)))).)))).)))))........(((((..((((.........(((((((((..(((((((...((((((((((((((..((((..((((......................))))..))))...(((((..((.((((.(((((.((...((((((..((..(((((((((..(....)..)))))))))..........(((((((((((((((((((((.(((.(((((....(((((((....))))))).....)))))................((((((.........)))))).))).)))))....((((((((((..((...))..))))))))))..))))))))))).)))))))..))))))..))..((((....((((...........((((((.(((((((((((((.((((((.((..(((((((.......((((((((((.(....)))))))))))...((((.(((((....((((((...((((((((((((((((........))))))).........)))))))))..)))))).((((((........))))))....)))))....)))).)))))))..))....))))))..))).)))))))))).(((((((((((((....((((.((..(((((....))))).)).))))........................(((((((..(((((((((.(((.((((...((........))...))))))).)))))).)))..)))))))..))))))))))))).....................))))))....))))....))))....)))))))))))..))))))))))))))))))).))))))).)))))))))))))...)))))....... (-238.11) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 830 60 11 151 102 smit:SMT_807|5end_hypothetical_protein_predicted_by_Glimmer/Critica_716815..717045_NEGATIVE 311 1038 997 226 172 smit:SMT_910|5end_type_I_restriction_enzyme_R_protein_861889..862119_NEGATIVE 289 670 621 83 34 smit:SMT_1273|5end_K02006_cobalt_transport_system_ATP-binding_protein_1236909..1237139_POSITIVE 276 1077 1031 64 10 smit:SMT_1130|5end_MATE_efflux_family_protein_1065210..1065440_NEGATIVE 262 858 812 101 59 smit:SMT_132|5end_L-serine_dehydratase_alpha_subunit_84557..84787_NEGATIVE 261 237 193 204 157 smit:SMT_578|5end_lipoprotein_signal_peptidase_496061..496291_POSITIVE 260 1070 1021 226 169 smit:SMT_420|5end_hypothetical_protein_predicted_by_Glimmer/Critica_362795..363025_POSITIVE 258 890 841 43 8 smit:SMT_244|5end_PTS_system,_mannose-specific_IIAB_component_181857..182087_NEGATIVE 257 75 31 192 146 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 257 1059 1015 200 150 smit:SMT_1098|5end_hypothetical_protein_1041992..1042222_NEGATIVE 256 587 541 209 142 smit:SMT_235|5end_hypothetical_protein_174081..174311_POSITIVE 252 1040 998 221 173 smit:SMT_876|5end_hypothetical_protein_predicted_by_Glimmer/Critica_823502..823732_NEGATIVE 248 588 543 137 97 smit:SMT_2029|5end_acetyltransferase,_GNAT_family_1943749..1943979_POSITIVE 248 588 543 137 97 smit:SMT_1755|5end_acetyltransferase,_GNAT_family_1733042..1733272_POSITIVE 248 890 846 135 90 smit:SMT_769|5end_spermidine/putrescine-binding_periplasmic_protein_680589..680819_NEGATIVE 247 419 376 169 131 smit:SMT_1801|5end_heavy_metal_translocating_P-type_ATPase_1773916..1774146_POSITIVE 245 120 72 122 80 smit:SMT_1770|5end_hypothetical_protein_1746505..1746735_NEGATIVE 243 567 527 130 81 smit:SMT_1654|5end_K03110_signal_recognition_particle_receptor_1642150..1642380_POSITIVE 242 1079 1031 79 21 smit:SMT_1862|5end_K02027_multiple_sugar_transport_system_substrate-binding_protein_1824094..1824324_POSITIVE 242 1079 1031 79 21 smit:SMT_1763|5end_K02027_multiple_sugar_transport_system_substrate-binding_protein_1738537..1738767_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 289 670 621 98 49 smit:SMT_1272|3end_K02006_cobalt_transport_system_ATP-binding_protein_1237004..1237154_POSITIVE 262 858 812 92 50 smit:SMT_133|3end_L-serine_dehydratase_beta_subunit_84566..84716_NEGATIVE 258 890 841 37 2 smit:SMT_245|3end_hypothetical_protein_predicted_by_Glimmer/Critica_181863..182013_NEGATIVE 257 75 31 106 60 smit:SMT_1493|3end_DNA-directed_RNA_polymerase,_beta'_subunit/160_kD_subunit_1479494..1479644_POSITIVE 257 1059 1015 148 98 smit:SMT_1099|3end_protein_tyrosine_phosphatase_1042044..1042194_NEGATIVE 248 890 846 138 93 smit:SMT_770|3end_K02053_spermidine/putrescine_transport_system_permease_protein_680586..680736_NEGATIVE 243 567 527 126 77 smit:SMT_1653|3end_hydrolase_1642226..1642376_POSITIVE 242 1068 1023 150 93 smit:SMT_1366|3end_K02238_competence_protein_ComEC_1344648..1344798_NEGATIVE 239 1056 1012 123 81 smit:SMT_1057|3end_replicative_DNA_helicase_996565..996715_POSITIVE 238 955 918 87 48 smit:SMT_581|3end_ATP_synthase_A_chain_499069..499219_POSITIVE 238 1020 976 101 64 smit:SMT_154|3end_K03647_protein_involved_in_ribonucleotide_reduction_102474..102624_POSITIVE 238 77 36 60 21 smit:SMT_138|3end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_90463..90613_POSITIVE 237 1036 1010 133 106 smit:SMT_302|3end_K07444_putative_N6-adenine-specific_DNA_methylase_245319..245469_POSITIVE 235 1059 1011 149 104 smit:SMT_1124|3end_pyrrolidone-carboxylate_peptidase_1060225..1060375_NEGATIVE 233 570 528 109 72 smit:SMT_630|3end_phosphoserine_phosphatase_536183..536333_POSITIVE 233 856 830 122 90 smit:SMT_528|3end_hypothetical_protein_predicted_by_Glimmer/Critica_452132..452282_POSITIVE 233 856 830 122 90 smit:SMT_511|3end_hypothetical_protein_predicted_by_Glimmer/Critica_440022..440172_POSITIVE 231 207 164 124 87 smit:SMT_627|3end_glucose-1-phosphate_adenylyltransferase_532921..533071_POSITIVE 230 148 113 143 107 smit:SMT_1426|3end_K03095_SprT-like_protein_1410864..1411014_NEGATIVE 229 1037 991 111 59 smit:SMT_805|3end_hypothetical_protein_predicted_by_Glimmer/Critica_715692..715842_NEGATIVE