Origin IGS: ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgagtttataacattaaaaagctttgggaaccaaggctttttttttcattaatttgtttttccattttatcctccgatttgaactcgcactgacatttatttataacaaaactatatatctagaatagcataaacattaggtattataggttttcaaaccaaatacgagtcattcgtttttgccctacttttgccacgtttttaaagcctgacattgaaaacacctagaagtatttccctaaaatcagctatatttcaacacttttgtttattttcaatatgaaaagttcttacaaattcatggtggaggcatcgttctaatcggcttaaaactaatcccattactttcaaatgtattgaagtaaggagagtaacgtcattactgacaaagtctaatttaatttactaatctagtaaatttattcttttagataactaggtatttaaatatagtactactaatttatttatttaaaattacaaatctattggtagctttttggtagctaaacagacaaattttataatgtttatcaaagtgaacataaaaagaatgttgatttgtcagcattcttttttatttcaaatgtattctcggaattagaacttgggggttattaaactcttgattttttcaacaagctatggtattcttttgttagttaataaacttacaaaaaggagaacaa Mask Tandem Repeat Region ================================================ ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Find is-nt database================================================ Query_seq: SMT_727:SMT_728|SMT_727:SMT_728:phage transcriptional repressor:hypothetical protein:<-<-:632604..633292 689 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_727:SMT_728|SMT_727:SMT_728:phage transcriptional repressor:hypothetical protein:<-<-:632604..633292 689 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_727:SMT_728|SMT_727:SMT_728:phage transcriptional repressor:hypothetical protein:<-<-:632604..633292 689 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 119 End: 223 ...................................................................................................................... M L T N Q H S F Y V H F D K H Y K I C L F S Y Q K A T N R F V I L N K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 288 End: 431 ............................................................................................................................................................................................................................................................................................... M K L D F V S N D V T L L T S I H L K V M G L V L S R L E R C L H H E F V R T F H I E N K Q K C .................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 571 End: 681 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y S F V I N K C Q C E F K S E D K M E K Q I N E K K S L G S Q S F L M L ........ Protein_Len: 34 Strand: - Start: 565 End: 666 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E L Y I T K N Y I F T L A L E F R L I F H F F L N I F F F A K T G M ....................... Protein_Len: 32 Strand: - Start: 465 End: 560 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ T N E I D P K L F T A F T P C F R I V R I Q N S F R Y Y R I N M ................................................................................................................................. Protein_Len: 38 Strand: - Start: 89 End: 202 ........................................................................................ N R S Y M Q F L F S H Q C I L M R K I N V K I F M I F N T Q K A V L F S G M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 162 End: 191 .................................................................................................................................................................TTTGGTAGCTAAACAGACAAATTTTATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 36 End: 65 ...................................CTTGATTTTTTCAACAAGCTATGGTATTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -8.1 Tail_Score: -5.64421 Start: 117 End: 138 Full_Region: aagtgaacataaaaa gaatgttga tttg tcagcattc ttttttatttcaaat ....................................................................................................................gaatgttgatttgtcagcattc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -5.9 Tail_Score: -5.1167 Start: 117 End: 138 Full_Region: ATTTGAAATAAAAAA GAATGCTGA CAAA TCAACATTC TTTTTATGTTCACTT ....................................................................................................................GAATGCTGACAAATCAACATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -6.7 Tail_Score: -4.68601 Start: 272 End: 288 Full_Region: caaagtctaatttaa tttacta atc tagtaaa tttattcttttagat ...............................................................................................................................................................................................................................................................................tttactaatctagtaaa................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 47 HP_score: -2.6 Tail_Score: -3.66908 Start: 320 End: 353 Full_Region: CAGTAATGACGTTAC TCTCCTTACTTCAA TACAT TTGAAAGTAATGGGA TTAGTTTTAAGCCGA ...............................................................................................................................................................................................................................................................................................................................TCTCCTTACTTCAATACATTTGAAAGTAATGGGA................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 50 HP_score: -4.9 Tail_Score: -2.72829 Start: 508 End: 530 Full_Region: GTGGCAAAAGTAGGG CAAAAACGA ATGAC TCGTATTTG GTTTGAAAACCTATA ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACGAATGACTCGTATTTG............................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -6.5 Tail_Score: -4.90906 Start: 653 End: 669 Full_Region: TTAATGAAAAAAAAA GCCTTGG TTC CCAAAGC TTTTTAATGTTATAA ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGTTCCCAAAGC.................... Find igs database================================================ Query_seq: SMT_727:SMT_728|SMT_727:SMT_728:phage transcriptional repressor:hypothetical protein:<-<-:632604..633292 689 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Intra-Species Hit: Count: 1 Min: 1 Max: 689 Len: 689 Subject: smit_SMT_727_SMT_728|phage transcriptional repressor:hypothetical protein|NEGATIVE:NEGATIVE|[632604,633292]|689 HSP 1 e-value: 0.0 bit: 1312.0 Len: 689 Query Start:1 Query End:689 Subject Strand: POSITIVE Subject Start: 1 Subject End: 689 ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgnnnnnnnnngccttggttcccaaagctttttaatgttataaactca ttgttctcctttttgtaagtttattaactaacaaaagaataccatagcttgttgaaaaaatcaagagtttaataacccccaagttctaattccgagaatacatttgaaataaaaaagaatgctgacaaatcaacattctttttatgttcactttgataaacattataaaatttgtctgtttagctaccaaaaagctaccaatagatttgtaattttaaataaataaattagtagtactatatttaaatacctagttatctaaaagaataaatttactagattagtaaattaaattagactttgtcagtaatgacgttactctccttacttcaatacatttgaaagtaatgggattagttttaagccgattagaacgatgcctccaccatgaatttgtaagaacttttcatattgaaaataaacaaaagtgttgaaatatagctgattttagggaaatacttctaggtgttttcaatgtcaggctttaaaaacgtggcaaaagtagggcaaaaacgaatgactcgtatttggtttgaaaacctataatacctaatgtttatgctattctagatatatagttttgttataaataaatgtcagtgcgagttcaaatcggaggataaaatggaaaaacaaattaatgaaaaaaaaagccttggttcccaaagctttttaatgttataaactca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGUUCUCCUUUUUGUAAGUUUAUUAACUAACAAAAGAAUACCAUAGCUUGUUGAAAAAAUCAAGAGUUUAAUAACCCCCAAGUUCUAAUUCCGAGAAUACAUUUGAAAUAAAAAAGAAUGCUGACAAAUCAACAUUCUUUUUAUGUUCACUUUGAUAAACAUUAUAAAAUUUGUCUGUUUAGCUACCAAAAAGCUACCAAUAGAUUUGUAAUUUUAAAUAAAUAAAUUAGUAGUACUAUAUUUAAAUACCUAGUUAUCUAAAAGAAUAAAUUUACUAGAUUAGUAAAUUAAAUUAGACUUUGUCAGUAAUGACGUUACUCUCCUUACUUCAAUACAUUUGAAAGUAAUGGGAUUAGUUUUAAGCCGAUUAGAACGAUGCCUCCACCAUGAAUUUGUAAGAACUUUUCAUAUUGAAAAUAAACAAAAGUGUUGAAAUAUAGCUGAUUUUAGGGAAAUACUUCUAGGUGUUUUCAAUGUCAGGCUUUAAAAACGUGGCAAAAGUAGGGCAAAAACGAAUGACUCGUAUUUGGUUUGAAAACCUAUAAUACCUAAUGUUUAUGCUAUUCUAGAUAUAUAGUUUUGUUAUAAAUAAAUGUCAGUGCGAGUUCAAAUCGGAGGAUAAAAUGGAAAAACAAAUUAAUGAAAAAAAAAGCCUUGGUUCCCAAAGCUUUUUAAUGUUAUAAACUCA .((((((....(((((.((((....)))).))))))))))).......................(((((((.((((..(((.(((((((((.............((((...((((((((((.(((....))).))))))))))...))))(((((((((......(((((((.((((((((((((.......)))))..)))))))....)))))))......((((((((.....))).))))).........)))))..))))....(((((((((...))))))))).....(((((..((((....)))).....((((.(((((((((.....))).)))))).))))..)))))......)))))))))....(((((....((((((((((.((..(((((.....)))))..(((((((.(((......(((((.(((.(((((((((((((....)))))))))..(((((.(.........).)))))...(((((.((((..((((((.....)))))).))))....))))).....)))).)))...))))).........))).)))))))...........))..))))))))))....)))))......)))...................(((((((.((((...)))).)))))))...))))))))))). (-144.76) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGUUUAUAACAUUAAAAAGCUUUGGGAACCAAGGCUUUUUUUUUCAUUAAUUUGUUUUUCCAUUUUAUCCUCCGAUUUGAACUCGCACUGACAUUUAUUUAUAACAAAACUAUAUAUCUAGAAUAGCAUAAACAUUAGGUAUUAUAGGUUUUCAAACCAAAUACGAGUCAUUCGUUUUUGCCCUACUUUUGCCACGUUUUUAAAGCCUGACAUUGAAAACACCUAGAAGUAUUUCCCUAAAAUCAGCUAUAUUUCAACACUUUUGUUUAUUUUCAAUAUGAAAAGUUCUUACAAAUUCAUGGUGGAGGCAUCGUUCUAAUCGGCUUAAAACUAAUCCCAUUACUUUCAAAUGUAUUGAAGUAAGGAGAGUAACGUCAUUACUGACAAAGUCUAAUUUAAUUUACUAAUCUAGUAAAUUUAUUCUUUUAGAUAACUAGGUAUUUAAAUAUAGUACUACUAAUUUAUUUAUUUAAAAUUACAAAUCUAUUGGUAGCUUUUUGGUAGCUAAACAGACAAAUUUUAUAAUGUUUAUCAAAGUGAACAUAAAAAGAAUGUUGAUUUGUCAGCAUUCUUUUUUAUUUCAAAUGUAUUCUCGGAAUUAGAACUUGGGGGUUAUUAAACUCUUGAUUUUUUCAACAAGCUAUGGUAUUCUUUUGUUAGUUAAUAAACUUACAAAAAGGAGAACAA .(((((.........((((((((((((...))))))))))))........)))))................((((..((((...((.....))..((((((..((((((((..((((.(((((((((..((((((((((.(((((...((((....)))).)))))..(((.........(((((((((..((....((((((((.(.....).)))))))).....(((((((....((......))..)))))))......(((((...(((((.....)))))......)))))..)).))))).))))..(((((((..((((....((((((.((.((((((.(((.....)))))))))))...((((.((((....))))...((((((...(((((((((...))))))))).......))))))...((((((..(((((.(((.....))))))))..))))))...))))......))))))))))..)))).)))......)))........)))))))))).....((((...((((((((((((((....))))))))))))))...))))....)))))).)))...((((.(..((((((....))))))..).)))).............))))..))))))))...))))))....))))..))))..... (-139.03) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 781 90 41 181 132 smit:SMT_727|5end_phage_transcriptional_repressor_632513..632743_NEGATIVE 278 639 598 84 50 smit:SMT_1049|5end_hypothetical_protein_988438..988668_POSITIVE 274 395 351 127 75 smit:SMT_1794|5end_SOS_responce_UmuC_protein_1769074..1769304_NEGATIVE 260 540 494 84 29 smit:SMT_1275|5end_rod_shape-determining_protein_MreC_1238594..1238824_POSITIVE 258 410 363 127 70 smit:SMT_1025|5end_hypothetical_protein_960557..960787_NEGATIVE 256 535 492 193 148 smit:SMT_1714|5end_hypothetical_membrane_spanning_protein_1701356..1701586_POSITIVE 253 509 464 56 3 smit:SMT_1322|5end_K02075_zinc/manganese_transport_system_permease_protein_1291371..1291601_POSITIVE 253 90 44 203 151 smit:SMT_701|5end_hypothetical_protein_611855..612085_NEGATIVE 253 400 352 106 59 smit:SMT_358|5end_hypothetical_protein_293947..294177_POSITIVE 247 414 371 117 66 smit:SMT_241|5end_hypothetical_protein_predicted_by_Glimmer/Critica_178507..178737_POSITIVE 245 398 351 193 150 smit:SMT_1689|5end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1671542..1671772_POSITIVE 244 347 303 216 171 smit:SMT_2114|5end_x-prolyl-dipeptidyl_aminopeptidase_2001484..2001714_POSITIVE 243 374 340 33 1 smit:SMT_354|5end_hypothetical_protein_291343..291573_POSITIVE 241 629 596 224 185 smit:SMT_982|5end_D-tyrosyl-tRNA(Tyr)_deacylase_929654..929884_NEGATIVE 241 387 347 73 35 smit:SMT_479|5end_K03308_neurotransmitter:Na+_symporter,_NSS_family_416656..416886_NEGATIVE 241 387 347 73 35 smit:SMT_462|5end_K03308_neurotransmitter:Na+_symporter,_NSS_family_401658..401888_NEGATIVE 237 383 347 228 196 smit:SMT_1912|5end_D-alanyl-D-alanine_carboxypeptidase_1857920..1858150_NEGATIVE 237 389 344 158 118 smit:SMT_732|5end_K07467_phage_replication_initiation_protein_639409..639639_NEGATIVE 237 516 472 58 21 smit:SMT_327|5end_hypothetical_protein_263953..264183_POSITIVE 234 390 344 215 174 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 278 639 598 87 53 smit:SMT_1048|3end_K06518_holin-like_protein_988521..988671_POSITIVE 268 496 451 45 8 smit:SMT_1078|3end_folylpolyglutamate_synthase_1015391..1015541_NEGATIVE 262 509 464 63 7 smit:SMT_1321|3end_K02074_zinc/manganese_transport_system_ATP-binding_protein_1291458..1291608_POSITIVE 253 90 44 112 60 smit:SMT_702|3end_hypothetical_protein_611946..612096_NEGATIVE 242 397 356 47 1 smit:SMT_921|3end_putative_PP2C_protein_phosphatase_874498..874648_NEGATIVE 240 525 481 139 84 smit:SMT_1570|3end_hypothetical_protein_1563250..1563400_NEGATIVE 236 635 594 70 21 smit:SMT_82|3end_transcriptional_regulator,_TetR_family_14330..14480_POSITIVE 234 486 441 86 34 smit:SMT_1814|3end_amino_acid_transporter_1788640..1788790_POSITIVE 233 353 311 120 77 smit:SMT_769|3end_spermidine/putrescine-binding_periplasmic_protein_679519..679669_NEGATIVE 231 353 311 54 8 smit:SMT_1118|3end_hypothetical_protein_1054779..1054929_NEGATIVE 229 528 481 71 21 smit:SMT_2057|3end_cell_division_protein_FtsH_1966897..1967047_NEGATIVE 227 629 595 151 111 smit:SMT_1557|3end_hypothetical_protein_1543650..1543800_POSITIVE 227 386 348 76 23 smit:SMT_577|3end_transcriptional_regulator,_LysR_family_496144..496294_POSITIVE 226 495 459 119 79 smit:SMT_2112|3end_transcription-repair_coupling_factor_2000373..2000523_NEGATIVE 225 509 462 142 94 smit:SMT_976|3end_hypothetical_protein_924164..924314_NEGATIVE 222 400 351 141 88 smit:SMT_1558|3end_hypothetical_protein_1543855..1544005_NEGATIVE 222 508 467 149 113 smit:SMT_331|3end_endo-beta-N-acetylglucosaminidase_271415..271565_POSITIVE 220 391 356 55 20 smit:SMT_291|3end_dTDP-4-dehydrorhamnose_3,5-epimerase_234870..235020_POSITIVE 220 583 550 112 71 smit:SMT_199|3end_K07166_ACT_domain-containing_protein_129817..129967_POSITIVE 218 389 357 76 46 smit:SMT_1871|3end_modification_methylase,_HemK_family_1829803..1829953_NEGATIVE