Origin IGS: tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gacaaaggaaggccgcagggctttccttttttagaaagaagaaaaatgagcacttccgtaattggaaatgctcgttttttgatgtatttagactctcatactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Mask Tandem Repeat Region ================================================ tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Find is-nt database================================================ Query_seq: SMT_698:SMT_699|SMT_698:SMT_699:uracil permease:K03106 signal recognition particle, subunit SRP54:-><-:609830..610030 201 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_698:SMT_699|SMT_698:SMT_699:uracil permease:K03106 signal recognition particle, subunit SRP54:-><-:609830..610030 201 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_698:SMT_699|SMT_698:SMT_699:uracil permease:K03106 signal recognition particle, subunit SRP54:-><-:609830..610030 201 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 18 End: 200 ................. M Q T T S T S P C R T Q V Q P A A S F L V C S L I F I E Y E S L N T S K N E H F Q L R K C S F F F F L K K E S P A A F L . tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 85 HP_score: -6.3 Tail_Score: -5.42164 Start: 128 End: 155 Full_Region: AAATACATCAAAAAA CGAGCATTTCC AATTAC GGAAGTGCTCA TTTTTCTTCTTTCTA ...............................................................................................................................CGAGCATTTCCAATTACGGAAGTGCTCA.............................................. TransTerm Strand: - Conf: 91 HP_score: -7.0 Tail_Score: -5.28755 Start: 128 End: 155 Full_Region: tagaaagaagaaaaa tgagcacttccg taat tggaaatgctcg ttttttgatgtattt ...............................................................................................................................tgagcacttccgtaattggaaatgctcg.............................................. TransTerm Strand: + Conf: 81 HP_score: -9.8 Tail_Score: -3.82859 Start: 129 End: 154 Full_Region: AATACATCAAAAAAC GAGCATTTCC AATTAC GGAAGTGCTC ATTTTTCTTCTTTCT ................................................................................................................................GAGCATTTCCAATTACGGAAGTGCTC............................................... TransTerm Strand: - Conf: 75 HP_score: -8.3 Tail_Score: -3.74813 Start: 129 End: 154 Full_Region: agaaagaagaaaaat gagcacttccg taat tggaaatgctc gttttttgatgtatt ................................................................................................................................gagcacttccgtaattggaaatgctc............................................... Find igs database================================================ Query_seq: SMT_698:SMT_699|SMT_698:SMT_699:uracil permease:K03106 signal recognition particle, subunit SRP54:-><-:609830..610030 201 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Intra-Species Hit: Count: 37 Min: 1 Max: 201 Len: 201 Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 1.0E-110 bit: 398.0 Len: 201 Query Start:1 Query End:201 Subject Strand: POSITIVE Subject Start: 1 Subject End: 201 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgagagtctaaatacatcaaaaaacgagcatttccaattacggaagtgctcatttttcttctttctaaaaaaggaaagccctgcggccttcctttgtc Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 192 Subject End: 295 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 153 Subject End: 256 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 178 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 50 Subject End: 153 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-47 bit: 190.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 105 Subject End: 208 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 102 Query Start:3 Query End:104 Subject Strand: POSITIVE Subject Start: 55 Subject End: 156 ..ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ..ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 19 Subject End: 122 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 559 Subject End: 662 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 225 Subject End: 328 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 129 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtat................................................................................................. Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattga..................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga..................................................................................................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 202 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 124 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattga..................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga..................................................................................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 154 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattga..................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga..................................................................................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta.................................................................................................. Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 209 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 181 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 106 Subject End: 209 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 177 Subject End: 280 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 6.0E-31 bit: 135.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 227 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 6.0E-31 bit: 135.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 216 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 147 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 6.0E-28 bit: 125.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 359 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatgag.............................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtatgag.............................................................................................. Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 163 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat................................................................................................. Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 102 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. tactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta.................................................................................................. Subject: smit_SMT_1569_SMT_1570|dihydroxy-acid dehydratase:hypothetical protein|POSITIVE:NEGATIVE|[1563129,1563339]|211 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:60 Query End:104 Subject Strand: POSITIVE Subject Start: 110 Subject End: 154 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 6 Subject End: 52 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 183 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta......................................................................................................................................................... HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 49 Query Start:60 Query End:108 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 77 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtatgaga............................................................................................. ...........................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtatgaga............................................................................................. Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:64 Query End:104 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 199 ...............................................................cggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...............................................................cggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 353 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:1 Query End:32 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 270 tactcttcgaaaatcaaattcaaaccacgtca......................................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtca......................................................................................................................................................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 40 Query Start:64 Query End:103 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 ...............................................................cggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ...............................................................cggctagcttcctagtttgctctttgattttcattgagta.................................................................................................. Inter-species Hit: Count: 55 Min: 1 Max: 107 Len: 107 Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 113 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 190 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 157 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 196 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 112 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 292 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 219 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 171 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. tactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta.................................................................................................. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 146 Subject End: 251 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatga............................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtatga............................................................................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 146 Subject End: 251 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatga............................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtatga............................................................................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 146 Subject End: 251 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtatga............................................................................................... tactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtatga............................................................................................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 2.0E-30 bit: 133.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 48 Subject End: 149 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta.................................................................................................. Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 2.0E-21 bit: 103.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................................................................................. Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 2.0E-21 bit: 103.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................................................................................. Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 1861 Subject End: 1908 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 546 Subject End: 593 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat................................................................................................. Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat................................................................................................. Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 249 Subject End: 296 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 102 Subject End: 148 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat................................................................................................. Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 86 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 187 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... HSP 2 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtat................................................................................................. Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:1 Query End:45 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc............................................................................................................................................................ tactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc............................................................................................................................................................ HSP 2 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:63 Query End:103 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ..............................................................gcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ..............................................................gcggctagttacctagtttgttctttgattttcattgagta.................................................................................................. Subject: NC_008533_SPD_0729_SPD_0730|hemolysin-related protein:purine nucleoside phosphorylase|POSITIVE:POSITIVE|[743379,744035]|657 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:1 Query End:43 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:1 Query End:45 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc............................................................................................................................................................ tactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc............................................................................................................................................................ HSP 2 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:63 Query End:103 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ..............................................................gcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ..............................................................gcggctagttacctagtttgttctttgattttcattgagta.................................................................................................. Subject: NC_003098_spr0737_spr0738|Conserved hypothetical protein, truncation:Purine nucleoside phosphorylase (inosine phosphorylase)|POSITIVE:POSITIVE|[735848,736504]|657 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:1 Query End:43 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 44 Query Start:60 Query End:103 Subject Strand: POSITIVE Subject Start: 961 Subject End: 1004 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................................................................................. HSP 2 e-value: 8.0E-9 bit: 61.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 811 Subject End: 856 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 44 Query Start:60 Query End:103 Subject Strand: POSITIVE Subject Start: 463 Subject End: 506 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................................................................................. HSP 2 e-value: 8.0E-9 bit: 61.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 313 Subject End: 358 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... Subject: NC_003028_SP_1706_SP_1707|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1611668,1611851]|184 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 43 Query Start:62 Query End:104 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 74 .............................................................tgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. .............................................................tgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:1 Query End:43 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 180 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 43 Query Start:61 Query End:103 Subject Strand: POSITIVE Subject Start: 464 Subject End: 506 ............................................................ctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ............................................................ctgcggctagtttcctagtttgctctttgattttcattgagta.................................................................................................. HSP 2 e-value: 8.0E-9 bit: 61.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 313 Subject End: 358 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... Subject: NC_003028_SP_1607_SP_1608|UDP-glucose 4-epimerase:oxidoreductase, DadA family protein|NEGATIVE:NEGATIVE|[1509447,1509746]|300 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:1 Query End:45 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc............................................................................................................................................................ tactcttcgaaaatccaattcaaactacgtcaacgtcgccttgcc............................................................................................................................................................ HSP 2 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:63 Query End:103 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ..............................................................gcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ..............................................................gcggctagtttcctagtttgttctttgatttttattgagta.................................................................................................. Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 135 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttgatttttattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 420 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0834_SP_0835|hemolysin-related protein:purine nucleoside phosphorylase, family 1|POSITIVE:POSITIVE|[783000,783652]|653 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcttagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:1 Query End:43 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg.............................................................................................................................................................. Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:60 Query End:104 Subject Strand: POSITIVE Subject Start: 491 Subject End: 535 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...........................................................cctgcggctagtttcctagtttgctctttggttttcattgagtat................................................................................................. HSP 2 e-value: 8.0E-9 bit: 61.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 341 Subject End: 386 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt.......................................................................................................................................................... Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 44 Query Start:64 Query End:107 Subject Strand: POSITIVE Subject Start: 248 Subject End: 291 ...............................................................cggctagtttcctagtttgttctttgattttcattgagtatgag.............................................................................................. ...............................................................cggctagcttcctagtttgctctttgattttcattgagtatgag.............................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 139 Subject End: 185 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 40 Query Start:65 Query End:104 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 73 ................................................................ggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ................................................................ggctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 272 Subject End: 318 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_008533_SPD_0077_SPD_0078|potassium uptake protein, Trk family protein:glycosyl transferase, group 2 family protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 39 Query Start:66 Query End:104 Subject Strand: NEGATIVE Subject Start: 128 Subject End: 166 .................................................................gctagtttcctagtttgttctttgattttcattgagtat................................................................................................. .................................................................gctagtttcctagtttgatctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 276 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003098_spr0071_spr0072|Trk transporter NAD+ binding protein - K+ transport:hypothetical protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 39 Query Start:66 Query End:104 Subject Strand: NEGATIVE Subject Start: 128 Subject End: 166 .................................................................gctagtttcctagtttgttctttgattttcattgagtat................................................................................................. .................................................................gctagtttcctagtttgatctttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 276 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 39 Query Start:66 Query End:104 Subject Strand: POSITIVE Subject Start: 357 Subject End: 395 .................................................................gctagtttcctagtttgttctttgattttcattgagtat................................................................................................. .................................................................gctagtttcctagtttgctctttgattttcattgagtat................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:1 Query End:48 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_0080_SP_0082|hypothetical protein:cell wall surface anchor family protein|POSITIVE:POSITIVE|[84985,86297]|1313 HSP 1 e-value: 1.0E-10 bit: 67.9 Len: 38 Query Start:66 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 38 .................................................................gctagtttcctagtttgttctttgattttcattgagta.................................................................................................. .................................................................gctagtttcctagtttgatctttgattttcattgagta.................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 148 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:64 Query End:104 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ...............................................................cggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...............................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................. HSP 2 e-value: 5.0E-10 bit: 65.9 Len: 49 Query Start:1 Query End:49 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 350 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:64 Query End:104 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ...............................................................cggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...............................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................. HSP 2 e-value: 5.0E-10 bit: 65.9 Len: 49 Query Start:1 Query End:49 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 350 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:64 Query End:104 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 146 ...............................................................cggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ...............................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................. HSP 2 e-value: 5.0E-10 bit: 65.9 Len: 49 Query Start:1 Query End:49 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 255 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac........................................................................................................................................................ Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:57 Query End:104 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ........................................................cagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................. ........................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta......................................................................................................................................................... Subject: NC_003028_SP_2153_SP_2156|hypothetical protein:SPFH domain/Band 7 family|POSITIVE:NEGATIVE|[2068633,2069965]|1333 HSP 1 e-value: 2.0E-9 bit: 63.9 Len: 44 Query Start:60 Query End:103 Subject Strand: NEGATIVE Subject Start: 1133 Subject End: 1176 ...........................................................cctgcggctagtttcctagtttgttctttgattttcattgagta.................................................................................................. ...........................................................cctgtggctagtttcctaatttgctctttgattttcattgagta.................................................................................................. HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:1 Query End:48 Subject Strand: NEGATIVE Subject Start: 1279 Subject End: 1325 tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta......................................................................................................................................................... tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta......................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCUUCGAAAAUCAAAUUCAAACCACGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGUUCUUUGAUUUUCAUUGAGUAUGAG (((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...))))).... (-32.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUCAUACUCAAUGAAAAUCAAAGAACAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUA ....(((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))))) (-42.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1075 70 21 210 161 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 996 70 21 175 126 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 996 70 21 175 126 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 996 70 21 175 126 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 951 70 21 193 144 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 932 60 11 230 181 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 758 100 53 94 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 705 100 53 94 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 704 100 53 94 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 702 100 53 94 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 701 100 53 94 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 699 48 1 199 153 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 590 48 17 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 556 100 53 197 152 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 499 44 1 210 168 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 473 32 1 228 197 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 437 43 1 173 124 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 397 35 1 231 198 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 386 44 1 207 166 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 380 64 21 231 182 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 996 70 21 60 11 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 996 70 21 60 11 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 996 70 21 60 11 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 918 70 21 57 8 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 868 100 51 51 2 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 844 80 35 46 1 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 761 100 53 73 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 760 100 52 49 1 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 758 100 53 87 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 737 100 53 87 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 730 100 53 53 8 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 718 90 41 77 23 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 701 100 53 54 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 695 100 53 83 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 683 100 53 87 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 627 48 1 82 36 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 627 48 1 147 101 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 564 100 64 37 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 552 100 59 42 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 456 48 4 141 98 smit:SMT_1911|3end_hypothetical_protein_1857840..1857990_POSITIVE