Origin IGS: atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatttagtcctctttcctttgggaagaggctttttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtactaatactaggaaaaggacagttagaatcttctgtgttatactagagat Mask Tandem Repeat Region ================================================ atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Find is-nt database================================================ Query_seq: SMT_662:SMT_663|SMT_662:SMT_663:A/G-specific adenine glycosylase:phosphate acetyltransferase:<-<-:573918..574105 188 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_662:SMT_663|SMT_662:SMT_663:A/G-specific adenine glycosylase:phosphate acetyltransferase:<-<-:573918..574105 188 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_662:SMT_663|SMT_662:SMT_663:A/G-specific adenine glycosylase:phosphate acetyltransferase:<-<-:573918..574105 188 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 1 End: 186 M S S I T Q K I L T V L F L V L V L F E N Q I Q T T S T S P C R T Q V Q P A A S F L V C S L I F I E Y K K P L P K G K R .. atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_662:SMT_663|SMT_662:SMT_663:A/G-specific adenine glycosylase:phosphate acetyltransferase:<-<-:573918..574105 188 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Intra-Species Hit: Count: 38 Min: 1 Max: 188 Len: 188 Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 1.0E-102 bit: 373.0 Len: 188 Query Start:1 Query End:188 Subject Strand: POSITIVE Subject Start: 1 Subject End: 188 atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc atctctagtataacacagaagattctaactgtccttttcctagtattagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcctcttcccaaaggaaagaggactaaatc Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 1.0E-53 bit: 210.0 Len: 106 Query Start:50 Query End:155 Subject Strand: POSITIVE Subject Start: 153 Subject End: 258 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 1.0E-53 bit: 210.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 178 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 5.0E-53 bit: 208.0 Len: 113 Query Start:45 Query End:157 Subject Strand: POSITIVE Subject Start: 100 Subject End: 212 ............................................attagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... ............................................attaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 2.0E-52 bit: 206.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 192 Subject End: 295 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:52 Query End:155 Subject Strand: POSITIVE Subject Start: 55 Subject End: 158 ...................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ...................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 5.0E-47 bit: 188.0 Len: 107 Query Start:50 Query End:156 Subject Strand: POSITIVE Subject Start: 1 Subject End: 107 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa................................ Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 557 Subject End: 662 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 106 Query Start:50 Query End:155 Subject Strand: POSITIVE Subject Start: 225 Subject End: 330 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 7.0E-46 bit: 184.0 Len: 105 Query Start:49 Query End:153 Subject Strand: POSITIVE Subject Start: 18 Subject End: 122 ................................................gtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ................................................gtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 7.0E-46 bit: 184.0 Len: 109 Query Start:50 Query End:158 Subject Strand: NEGATIVE Subject Start: 47 Subject End: 154 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaa.............................. .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaa.............................. Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 129 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataa................................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-44 bit: 178.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 202 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 4.0E-44 bit: 178.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 124 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 100 Query Start:50 Query End:149 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 112 Query Start:50 Query End:161 Subject Strand: POSITIVE Subject Start: 1 Subject End: 112 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaaagcc........................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaacagcc........................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 100 Query Start:50 Query End:149 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 100 Query Start:50 Query End:149 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 103 Query Start:50 Query End:152 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta.................................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 209 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 181 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:50 Query End:155 Subject Strand: POSITIVE Subject Start: 106 Subject End: 211 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 111 Query Start:45 Query End:155 Subject Strand: POSITIVE Subject Start: 3 Subject End: 113 ............................................attagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................attaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 105 Query Start:52 Query End:156 Subject Strand: POSITIVE Subject Start: 39 Subject End: 143 ...................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ ...................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataaa................................ Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 177 Subject End: 280 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 4.0E-35 bit: 149.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 216 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa................................ Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:50 Query End:155 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 227 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 106 Query Start:50 Query End:155 Subject Strand: POSITIVE Subject Start: 1 Subject End: 105 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataa................................. Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 6.0E-31 bit: 135.0 Len: 104 Query Start:50 Query End:153 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 147 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 3.0E-26 bit: 119.0 Len: 104 Query Start:50 Query End:153 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 359 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat................................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 8.0E-21 bit: 101.0 Len: 103 Query Start:50 Query End:152 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 102 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... .................................................tactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta.................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 163 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:113 Query End:157 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 199 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataaaa............................... ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataaaa............................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 353 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: smit_SMT_1569_SMT_1570|dihydroxy-acid dehydratase:hypothetical protein|POSITIVE:NEGATIVE|[1563129,1563339]|211 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 50 Query Start:109 Query End:158 Subject Strand: POSITIVE Subject Start: 110 Subject End: 159 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataaaaa.............................. ............................................................................................................cctgcggctagtttcctagtttgttctttgattttcattgagtatcaaaa.............................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 6 Subject End: 52 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 183 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta........................................................................................... HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 77 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtat................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:50 Query End:81 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 270 .................................................tactcttcgaaaatcaaattcaaaccacgtca........................................................................................................... .................................................tactcttcgaaaatcaaattcaaaccacgtca........................................................................................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 7.0E-12 bit: 71.9 Len: 40 Query Start:113 Query End:152 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagta.................................... ................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta.................................... HSP 2 e-value: 7.0E-12 bit: 71.9 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta........................................................................................... Inter-species Hit: Count: 52 Min: 49 Max: 157 Len: 109 Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 2.0E-52 bit: 206.0 Len: 104 Query Start:50 Query End:153 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 113 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 108 Query Start:50 Query End:157 Subject Strand: POSITIVE Subject Start: 8 Subject End: 115 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... .................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 108 Query Start:50 Query End:157 Subject Strand: POSITIVE Subject Start: 8 Subject End: 115 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... .................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 2.0E-49 bit: 196.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 190 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 2.0E-49 bit: 196.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 157 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 2.0E-49 bit: 196.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 196 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 106 Query Start:50 Query End:155 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:50 Query End:153 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 112 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:50 Query End:153 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 292 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 4.0E-41 bit: 168.0 Len: 105 Query Start:50 Query End:154 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 219 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata.................................. .................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata.................................. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:50 Query End:152 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 171 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... .................................................tactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta.................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:50 Query End:156 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa................................ .................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa................................ Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 9.0E-33 bit: 141.0 Len: 103 Query Start:50 Query End:152 Subject Strand: POSITIVE Subject Start: 48 Subject End: 149 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta.................................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 8.0E-24 bit: 111.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 8.0E-24 bit: 111.0 Len: 104 Query Start:50 Query End:153 Subject Strand: POSITIVE Subject Start: 136 Subject End: 238 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .................................................tactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 1861 Subject End: 1908 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 249 Subject End: 296 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 102 Subject End: 148 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 86 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 49 Query Start:49 Query End:97 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 188 ................................................gtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... ................................................gtactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 546 Subject End: 593 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 8.0E-18 bit: 91.7 Len: 50 Query Start:106 Query End:155 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .........................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtataa................................. HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_0729_SPD_0730|hemolysin-related protein:purine nucleoside phosphorylase|POSITIVE:POSITIVE|[743379,744035]|657 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:50 Query End:92 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg................................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg................................................................................................ Subject: NC_003098_spr0737_spr0738|Conserved hypothetical protein, truncation:Purine nucleoside phosphorylase (inosine phosphorylase)|POSITIVE:POSITIVE|[735848,736504]|657 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:50 Query End:92 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg................................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg................................................................................................ Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 44 Query Start:109 Query End:152 Subject Strand: POSITIVE Subject Start: 961 Subject End: 1004 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................... ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................... HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 47 Query Start:50 Query End:96 Subject Strand: POSITIVE Subject Start: 811 Subject End: 856 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt............................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt............................................................................................ Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 44 Query Start:109 Query End:152 Subject Strand: POSITIVE Subject Start: 463 Subject End: 506 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................... ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................... HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 47 Query Start:50 Query End:96 Subject Strand: POSITIVE Subject Start: 313 Subject End: 358 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt............................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt............................................................................................ Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 52 Query Start:106 Query End:157 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... .........................................................................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtataaaa............................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 2.0E-15 bit: 83.8 Len: 50 Query Start:106 Query End:155 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .........................................................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtataa................................. Subject: NC_003028_SP_1706_SP_1707|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1611668,1611851]|184 HSP 1 e-value: 5.0E-16 bit: 85.7 Len: 43 Query Start:111 Query End:153 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 74 ..............................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtat................................... ..............................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:50 Query End:92 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 180 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg................................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg................................................................................................ Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 5.0E-16 bit: 85.7 Len: 43 Query Start:110 Query End:152 Subject Strand: POSITIVE Subject Start: 464 Subject End: 506 .............................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta.................................... .............................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta.................................... HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 47 Query Start:50 Query End:96 Subject Strand: POSITIVE Subject Start: 313 Subject End: 358 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt............................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt............................................................................................ Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 5.0E-16 bit: 85.7 Len: 47 Query Start:109 Query End:155 Subject Strand: POSITIVE Subject Start: 491 Subject End: 537 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cctgcggctagtttcctagtttgctctttggttttcattgagtataa................................. HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 47 Query Start:50 Query End:96 Subject Strand: POSITIVE Subject Start: 341 Subject End: 386 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt............................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt............................................................................................ Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 42 Query Start:114 Query End:155 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 73 .................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtataa................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 272 Subject End: 318 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 105 Query Start:50 Query End:154 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata.................................. .................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.................................. Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:50 Query End:94 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. .................................................tactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 41 Query Start:112 Query End:152 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ...............................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta.................................... ...............................................................................................................gcggctagttacctagtttgttctttgattttcattgagta.................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 105 Query Start:50 Query End:154 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata.................................. .................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.................................. Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:50 Query End:94 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. .................................................tactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 41 Query Start:112 Query End:152 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ...............................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta.................................... ...............................................................................................................gcggctagttacctagtttgttctttgattttcattgagta.................................... Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 135 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcggctagtttcctagtttgctctttgatttttattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 420 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_0834_SP_0835|hemolysin-related protein:purine nucleoside phosphorylase, family 1|POSITIVE:POSITIVE|[783000,783652]|653 HSP 1 e-value: 8.0E-15 bit: 81.8 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 143 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cctgcggctagtttcttagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 43 Query Start:50 Query End:92 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 247 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg................................................................................................ .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg................................................................................................ Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 52 Query Start:106 Query End:157 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... .........................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataaaa............................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 52 Query Start:106 Query End:157 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................... .........................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataaaa............................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 .........................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... .........................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 39 Query Start:115 Query End:153 Subject Strand: POSITIVE Subject Start: 357 Subject End: 395 ..................................................................................................................gctagtttcctagtttgctctttgattttcattgagtat................................... ..................................................................................................................gctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 68 Subject End: 114 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:113 Query End:153 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 49 Query Start:50 Query End:98 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 350 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:113 Query End:153 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 49 Query Start:50 Query End:98 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 350 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_003028_SP_1607_SP_1608|UDP-glucose 4-epimerase:oxidoreductase, DadA family protein|NEGATIVE:NEGATIVE|[1509447,1509746]|300 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:50 Query End:94 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. .................................................tactcttcgaaaatccaattcaaactacgtcaacgtcgccttgcc.............................................................................................. HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 41 Query Start:112 Query End:152 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ...............................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta.................................... ...............................................................................................................gcggctagtttcctagtttgttctttgatttttattgagta.................................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:113 Query End:153 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 146 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 49 Query Start:50 Query End:98 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 255 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:113 Query End:153 Subject Strand: POSITIVE Subject Start: 248 Subject End: 288 ................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: POSITIVE Subject Start: 139 Subject End: 185 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_2153_SP_2156|hypothetical protein:SPFH domain/Band 7 family|POSITIVE:NEGATIVE|[2068633,2069965]|1333 HSP 1 e-value: 7.0E-12 bit: 71.9 Len: 44 Query Start:109 Query End:152 Subject Strand: NEGATIVE Subject Start: 1133 Subject End: 1176 ............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta.................................... ............................................................................................................cctgtggctagtttcctaatttgctctttgattttcattgagta.................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:50 Query End:97 Subject Strand: NEGATIVE Subject Start: 1279 Subject End: 1325 .................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... .................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta........................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUACUCUUCGAAAAUCAAAUUCAAACCACGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAAA ((((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...)))))).... (-33.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAC .....(((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))))). (-44.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1062 70 21 209 160 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 986 90 41 212 163 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 983 70 21 174 125 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 983 70 21 174 125 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 983 70 21 174 125 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 907 60 11 229 180 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 773 100 54 93 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 717 100 54 93 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 716 100 54 93 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 665 49 1 199 147 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 638 100 54 93 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 637 100 54 93 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 590 49 18 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 571 100 54 196 152 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 454 45 2 210 166 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 452 33 1 228 194 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 387 44 2 173 121 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 380 65 22 231 182 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 356 98 55 198 152 smit:SMT_1335|5end_RNA_polymerase_sigma_factor_RpoD_1310201..1310431_NEGATIVE 352 79 32 162 115 smit:SMT_1915|5end_pyridoxine_biosynthesis_protein_1860329..1860559_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 983 70 21 59 10 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 983 70 21 59 10 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 983 70 21 59 10 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 905 70 21 56 7 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 880 90 41 55 6 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 776 100 54 72 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 775 100 53 48 1 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 773 100 54 86 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 748 90 41 76 27 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 745 100 54 52 8 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 716 100 54 53 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 710 100 54 82 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 698 100 54 86 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 670 100 54 86 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 591 49 1 82 30 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 579 100 65 36 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 577 49 2 147 98 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 567 100 60 41 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 456 49 5 141 98 smit:SMT_1911|3end_hypothetical_protein_1857840..1857990_POSITIVE 456 49 5 141 98 smit:SMT_867|3end_hypothetical_protein_816542..816692_POSITIVE