Origin IGS: agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gatttcctccttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattacattgatagtataacccctccccctaggtcagagtcaagcgtttttgcgaaattttttactttatcataacgtgaaaatggttttcttgacagaccttagaaaacatgataggatagtcaagtctatcaatcaaaagaaaggctcattttgagtactgatgaggctatttgccaagggcagtagctttttcttttgtaatactaattttaggagtttaact Mask Tandem Repeat Region ================================================ agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Find is-nt database================================================ Query_seq: SMT_482:SMT_483|SMT_482:SMT_483:hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative:<-->:418627..418966 340 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_482:SMT_483|SMT_482:SMT_483:hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative:<-->:418627..418966 340 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_482:SMT_483|SMT_482:SMT_483:hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative:<-->:418627..418966 340 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 129 End: 221 ................................................................................................................................ M S R K P F S R Y D K V K N F A K T L D S D L G G G V I L S M ....................................................................................................................... Protein_Len: 42 Strand: + Start: 215 End: 340 ...................................................................................................................................................................................................................... M N V I L F E N Q I Q T T S A S P Y R T Q V Q P A A S F L V C S L I F I E Y K E E I Protein_Len: 31 Strand: - Start: 155 End: 247 .......................................................................................................................................................... S L T F F K A F V S S E S R P P P T I S D I Y Y E E F I L N M ............................................................................................. Protein_Len: 35 Strand: - Start: 73 End: 177 ........................................................................ F S G K K Q N I S K V I R D H K R L D T L F V M K V N H Y L L F N R M ................................................................................................................................................................... agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 87 End: 116 ......................................................................................TTTGATTGATAGACTTGACTATCCTATCAT................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 107 End: 136 ..........................................................................................................CTTGACAGACCTTAGAAAACATGATAGGAT............................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 89 HP_score: -5.9 Tail_Score: -5.56263 Start: 37 End: 58 Full_Region: ttgagtactgatgag gctatttgcc aag ggcagtagc tttttcttttgtaat ....................................gctatttgccaagggcagtagc.......................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SMT_482:SMT_483|SMT_482:SMT_483:hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative:<-->:418627..418966 340 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Intra-Species Hit: Count: 39 Min: 1 Max: 340 Len: 340 Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 0.0 bit: 674.0 Len: 340 Query Start:1 Query End:340 Subject Strand: POSITIVE Subject Start: 1 Subject End: 340 agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc agttaaactcctaaaattagtattacaaaagaaaaagctactgcccttggcaaatagcctcatcagtactcaaaatgagcctttcttttgattgatagacttgactatcctatcatgttttctaaggtctgtcaagaaaaccattttcacgttatgataaagtaaaaaatttcgcaaaaacgcttgactctgacctagggggaggggttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaggaggaaatc Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 1.0E-54 bit: 214.0 Len: 110 Query Start:222 Query End:331 Subject Strand: NEGATIVE Subject Start: 23 Subject End: 132 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataag......... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 2.0E-53 bit: 210.0 Len: 110 Query Start:222 Query End:331 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 127 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 103 Query Start:222 Query End:324 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 103 Query Start:222 Query End:324 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 103 Query Start:222 Query End:324 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga................ Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 9.0E-50 bit: 198.0 Len: 104 Query Start:224 Query End:327 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta............. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 107 Query Start:225 Query End:331 Subject Strand: NEGATIVE Subject Start: 556 Subject End: 662 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 106 Query Start:225 Query End:330 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 110 Query Start:222 Query End:331 Subject Strand: POSITIVE Subject Start: 5 Subject End: 114 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 205 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 109 Query Start:222 Query End:330 Subject Strand: POSITIVE Subject Start: 150 Subject End: 258 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 181 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 106 Query Start:225 Query End:330 Subject Strand: POSITIVE Subject Start: 50 Subject End: 155 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 191 Subject End: 295 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............ Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 109 Query Start:223 Query End:331 Subject Strand: POSITIVE Subject Start: 104 Subject End: 212 ..............................................................................................................................................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ..............................................................................................................................................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 109 Query Start:222 Query End:330 Subject Strand: POSITIVE Subject Start: 102 Subject End: 210 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 124 Query Start:207 Query End:330 Subject Strand: POSITIVE Subject Start: 35 Subject End: 158 ..............................................................................................................................................................................................................gttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ..............................................................................................................................................................................................................gttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 107 Query Start:225 Query End:331 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 209 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 107 Query Start:225 Query End:331 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 181 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 106 Query Start:225 Query End:330 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 104 Query Start:225 Query End:328 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat............ Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 110 Query Start:221 Query End:330 Subject Strand: POSITIVE Subject Start: 33 Subject End: 142 ............................................................................................................................................................................................................................gtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ............................................................................................................................................................................................................................gtaattctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataa.......... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 8.0E-41 bit: 168.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 176 Subject End: 280 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat............ Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 107 Query Start:225 Query End:331 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataag......... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 105 Query Start:224 Query End:328 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat............ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 219 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 8.0E-38 bit: 159.0 Len: 104 Query Start:225 Query End:328 Subject Strand: POSITIVE Subject Start: 19 Subject End: 122 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............ Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 107 Query Start:225 Query End:331 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 227 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataag......... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 106 Query Start:225 Query End:330 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 154 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 105 Query Start:224 Query End:328 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 360 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat............ Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 104 Query Start:224 Query End:327 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta............. Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 51 Query Start:281 Query End:331 Subject Strand: NEGATIVE Subject Start: 65 Subject End: 115 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 216 Subject End: 265 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttaccgta.................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 186 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:284 Query End:328 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 77 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtat............ Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 109 Query Start:222 Query End:330 Subject Strand: POSITIVE Subject Start: 147 Subject End: 254 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa.......... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 53 Query Start:281 Query End:333 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 61 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataagga....... ........................................................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtattagga....... HSP 2 e-value: 1.0E-14 bit: 81.8 Len: 49 Query Start:224 Query End:272 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 164 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:284 Query End:328 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat............ HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 35 Query Start:224 Query End:258 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 271 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagc.................................................................................. ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagc.................................................................................. Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 40 Query Start:288 Query End:327 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 ...............................................................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta............. ...............................................................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta............. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:225 Query End:272 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta.................................................................... Subject: smit_SMT_319_SMT_320|K02356 elongation factor EF-P:alcohol dehydrogenase, zinc-containing|NEGATIVE:NEGATIVE|[258955,259330]|376 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 45 Query Start:284 Query End:328 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 205 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggcttgcttcctagtttgctctttgatttccattgagtat............ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 313 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcacgttaccgta.................................................................... Inter-species Hit: Count: 50 Min: 222 Max: 331 Len: 110 Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 105 Query Start:224 Query End:328 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 293 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat............ Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 106 Query Start:225 Query End:330 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 106 Query Start:225 Query End:330 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 104 Query Start:224 Query End:327 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 172 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ...............................................................................................................................................................................................................................atactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta............. Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:224 Query End:328 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 114 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............ Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:222 Query End:329 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 222 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata........... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata........... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 106 Query Start:225 Query End:330 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 106 Query Start:225 Query End:330 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 164 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ................................................................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 85 Subject End: 193 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 109 Query Start:222 Query End:330 Subject Strand: POSITIVE Subject Start: 5 Subject End: 113 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 160 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 109 Query Start:222 Query End:330 Subject Strand: POSITIVE Subject Start: 5 Subject End: 113 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 199 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:224 Query End:327 Subject Strand: POSITIVE Subject Start: 47 Subject End: 149 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta............. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 105 Query Start:224 Query End:328 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 113 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat............ Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............ Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............ Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 218 Subject End: 325 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactctttgaaaatctc-ttcaaaccacgtcagctttgctttaccgtactcaagtacagcctgcggctcgcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 315 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat............ Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 109 Query Start:222 Query End:330 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 315 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... .............................................................................................................................................................................................................................taatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataa.......... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat............ Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 105 Query Start:224 Query End:328 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...............................................................................................................................................................................................................................atactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat............ Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 50 Query Start:281 Query End:330 Subject Strand: POSITIVE Subject Start: 180 Subject End: 229 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 30 Subject End: 79 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcaccttaccgta.................................................................... Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 50 Query Start:281 Query End:330 Subject Strand: POSITIVE Subject Start: 180 Subject End: 229 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 30 Subject End: 79 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcaccttaccgta.................................................................... Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 50 Query Start:281 Query End:330 Subject Strand: POSITIVE Subject Start: 179 Subject End: 228 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 30 Subject End: 79 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcaccttaccgta.................................................................... Subject: NC_008533_SPD_0549_SPD_0550|lipoprotein, putative:ribosomal protein L11|POSITIVE:POSITIVE|[561971,562278]|308 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:281 Query End:327 Subject Strand: POSITIVE Subject Start: 137 Subject End: 183 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:225 Query End:269 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttacc....................................................................... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttacc....................................................................... Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:284 Query End:330 Subject Strand: POSITIVE Subject Start: 273 Subject End: 319 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 120 Subject End: 169 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003098_spr0696_spr0697|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[698465,698791]|327 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:284 Query End:330 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 87 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 240 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcatcgtcgccctaccgta.................................................................... Subject: NC_003098_spr0554_spr0555|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[554441,554748]|308 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:281 Query End:327 Subject Strand: POSITIVE Subject Start: 137 Subject End: 183 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:225 Query End:269 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttacc....................................................................... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttacc....................................................................... Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:284 Query End:330 Subject Strand: POSITIVE Subject Start: 273 Subject End: 319 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 120 Subject End: 169 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:284 Query End:330 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 87 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 326 Subject End: 375 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccctaccgta.................................................................... Subject: NC_003028_SP_0629_SP_0630|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[596487,596794]|308 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:281 Query End:327 Subject Strand: POSITIVE Subject Start: 137 Subject End: 183 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagta............. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:225 Query End:269 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttacc....................................................................... ................................................................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttacc....................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 105 Query Start:225 Query End:329 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata........... ................................................................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata........... Subject: NC_008533_SPD_0790_SPD_0791|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[809280,810395]|1116 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:284 Query End:328 Subject Strand: POSITIVE Subject Start: 207 Subject End: 251 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:224 Query End:272 Subject Strand: POSITIVE Subject Start: 102 Subject End: 149 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 105 Query Start:225 Query End:329 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 ................................................................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata........... ................................................................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata........... Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:284 Query End:328 Subject Strand: NEGATIVE Subject Start: 377 Subject End: 421 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:224 Query End:268 Subject Strand: NEGATIVE Subject Start: 484 Subject End: 527 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttac........................................................................ ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttac........................................................................ Subject: NC_003098_spr0797_spr0798|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[801749,802864]|1116 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:284 Query End:328 Subject Strand: POSITIVE Subject Start: 207 Subject End: 251 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:224 Query End:272 Subject Strand: POSITIVE Subject Start: 102 Subject End: 149 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003028_SP_0897_SP_0899|pyruvate kinase:hypothetical protein|POSITIVE:POSITIVE|[852843,854645]|1803 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:284 Query End:328 Subject Strand: POSITIVE Subject Start: 203 Subject End: 247 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:224 Query End:272 Subject Strand: POSITIVE Subject Start: 98 Subject End: 145 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:281 Query End:328 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ........................................................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 1.0E-14 bit: 81.8 Len: 49 Query Start:224 Query End:272 Subject Strand: POSITIVE Subject Start: 1860 Subject End: 1908 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:284 Query End:331 Subject Strand: POSITIVE Subject Start: 170 Subject End: 217 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ...........................................................................................................................................................................................................................................................................................cctgcggttagcttcctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 16 Subject End: 65 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 44 Query Start:285 Query End:328 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 303 ............................................................................................................................................................................................................................................................................................ctgcggctagcttcctagtttgctctttgattttcattgagtat............ ............................................................................................................................................................................................................................................................................................ctgcggctagcttcctagtttgctctttgattttcattgagtat............ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:224 Query End:272 Subject Strand: NEGATIVE Subject Start: 406 Subject End: 453 ...............................................................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... ...............................................................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 51 Query Start:281 Query End:331 Subject Strand: POSITIVE Subject Start: 106 Subject End: 156 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 2 Subject End: 51 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 51 Query Start:281 Query End:331 Subject Strand: POSITIVE Subject Start: 159 Subject End: 209 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 2.0E-13 bit: 77.8 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 52 Subject End: 102 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.................................................................... Subject: NC_003098_spr1922_spr1923|Maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[1905655,1905945]|291 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 47 Query Start:284 Query End:330 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 179 ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtataa.......... ...........................................................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgcactttgattttcattgagtataa.......... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 287 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatacttttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 51 Query Start:281 Query End:331 Subject Strand: POSITIVE Subject Start: 106 Subject End: 156 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 2 Subject End: 51 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 43 Query Start:288 Query End:330 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 156 ...............................................................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtataa.......... ...............................................................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtataa.......... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 51 Query Start:222 Query End:272 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 313 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta.................................................................... Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 51 Query Start:281 Query End:331 Subject Strand: POSITIVE Subject Start: 106 Subject End: 156 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataag......... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 2 Subject End: 51 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 543 Subject End: 593 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................... HSP 2 e-value: 6.0E-14 bit: 79.8 Len: 48 Query Start:281 Query End:328 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtat............ ........................................................................................................................................................................................................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat............ Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 51 Query Start:222 Query End:272 Subject Strand: POSITIVE Subject Start: 52 Subject End: 102 .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................... .............................................................................................................................................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.................................................................... HSP 2 e-value: 2.0E-13 bit: 77.8 Len: 51 Query Start:281 Query End:331 Subject Strand: POSITIVE Subject Start: 159 Subject End: 209 ........................................................................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataag......... ........................................................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtataag......... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUCGCCUUACCGUACUCAAGUACAGCCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAG ..((((((...((((((((((..(((((...(..((((((((....(.((((....)))).)...)))))..)))..)..)))))...))))))))))...))))))... (-31.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGCUGUACUUGAGUACGGUAAGGCGACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUA ...((((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..)))))).. (-45.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1093 80 31 182 133 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 1093 80 31 182 133 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 1093 80 31 182 133 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 974 70 21 207 158 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 971 90 41 210 161 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 848 106 61 97 52 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 841 60 11 227 178 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 804 107 61 98 52 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 745 109 61 100 52 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 723 107 61 98 52 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 659 107 61 201 155 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 644 107 61 98 52 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 621 50 3 198 152 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 597 46 3 217 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 558 37 2 230 195 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 513 49 1 173 121 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 510 51 20 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 467 46 3 214 165 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 427 38 1 231 195 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 392 46 3 206 157 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1093 80 31 67 18 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 1093 80 31 67 18 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 1093 80 31 67 18 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 1015 80 31 64 15 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 946 90 41 53 4 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 861 107 61 91 45 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 832 110 61 56 7 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 812 100 53 48 1 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 804 107 61 58 12 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 798 107 61 87 41 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 782 107 61 77 31 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 778 100 51 84 35 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 771 109 61 59 11 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 746 104 61 88 45 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 709 50 3 146 100 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 695 107 67 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 683 107 62 46 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 676 107 61 91 45 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 591 50 3 81 35 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 543 50 1 140 92 smit:SMT_1911|3end_hypothetical_protein_1857840..1857990_POSITIVE