Origin IGS: taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atttacttttcctctctttactcgttcgtaatcaacaaaacatcaagaaaatcctagttttacttgacctttttaaagaaaatcaagggcgttcaagaagagctacctaaatgctttgtatcaccttcattcagcttatataaacaaaaaaactccaattacaatcaagaattagagtttagcttacaagattagattgttcatttcgccatacgaaaaaacgtttcacatttcccttcgccagtcttaactgtatcaggttcaatgggtatcatctcagcctaaagcaccccaaatgtctttattatttaattactggaccagtatagcaaaaaatgaaagccctagcaagatatttgactgaaaaatatatttatatagatttcaatggtgatttattcttcctatagacgaagaaaaacctccacatcaagtggaggcaagctatttta Mask Tandem Repeat Region ================================================ taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Find is-nt database================================================ Query_seq: SMT_441:SMT_442|SMT_441:SMT_442:L-lactate oxidase:transcriptional regulator, putative:->->:381340..381791 452 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_441:SMT_442|SMT_441:SMT_442:L-lactate oxidase:transcriptional regulator, putative:->->:381340..381791 452 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_441:SMT_442|SMT_441:SMT_442:L-lactate oxidase:transcriptional regulator, putative:->->:381340..381791 452 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: - Start: 261 End: 389 .................................................................................................................................................................................................................................................................... D Q L S F E L E Q N Y N S N K Q K Y L S F S P S V F C K P L E E Q V G K I K K L F T M ............................................................... Protein_Len: 37 Strand: - Start: 92 End: 202 ........................................................................................... D F I K S P S E N K A I S T W Y N F L L S M Q P A K P Q S S V W Q V Q Y M .......................................................................................................................................................................................................................................................... taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 101 End: 130 ....................................................................................................CTTGCTAGGGCTTTCATTTTTTGCTATACT.................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 178 End: 207 .................................................................................................................................................................................CTTAACTGTATCAGGTTCAATGGGTATCAT..................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 120 End: 149 .......................................................................................................................TTTGCTATACTGGTCCAGTAATTAAATAAT............................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_441:SMT_442|SMT_441:SMT_442:L-lactate oxidase:transcriptional regulator, putative:->->:381340..381791 452 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Intra-Species Hit: Count: 2 Min: 1 Max: 452 Len: 452 Subject: smit_SMT_441_SMT_442|L-lactate oxidase:transcriptional regulator, putative|POSITIVE:POSITIVE|[381340,381791]|452 HSP 1 e-value: 0.0 bit: 854.0 Len: 452 Query Start:1 Query End:452 Subject Strand: POSITIVE Subject Start: 1 Subject End: 452 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagnnnnnnngtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaatcaccattgaaatctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggagtttttttgtttatataagctgaatgaaggtgatacaaagcatttaggtagctcttcttgaacgcccttgattttctttaaaaaggtcaagtaaaactaggattttcttgatgttttgttgattacgaacgagtaaagagaggaaaagtaaat Subject: smit_SMT_444_SMT_445|thiamine-phosphate pyrophosphorylase:hypothetical protein|POSITIVE:POSITIVE|[384109,384448]|340 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 147 Query Start:138 Query End:284 Subject Strand: POSITIVE Subject Start: 85 Subject End: 231 .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattc........................................................................................................................................................................ .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaatggttttgtatttatagaaactaaccatctaatcttgtaagctgaactctaattc........................................................................................................................................................................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 31 Query Start:323 Query End:353 Subject Strand: POSITIVE Subject Start: 269 Subject End: 299 ..................................................................................................................................................................................................................................................................................................................................atgaaggtgatacaaagcatttaggtagctc................................................................................................... ..................................................................................................................................................................................................................................................................................................................................atgaagatgatacaaagcatttaggtagctc................................................................................................... Inter-species Hit: Count: 6 Min: 1 Max: 300 Len: 300 Subject: NC_008533_SPD_0621_SPD_0622|lactate oxidase:transcriptional regulator, TENA/THI-4 family protein, putative|POSITIVE:POSITIVE|[643633,644186]|554 HSP 1 e-value: 1.0E-105 bit: 383.0 Len: 229 Query Start:72 Query End:300 Subject Strand: POSITIVE Subject Start: 175 Subject End: 402 .......................................................................ctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggag........................................................................................................................................................ .......................................................................ctatataaagatatttttcggtcaaatatcttgctagggctttcattttttgctatactggttcagtaattaaataatagagacatttggggtgctttaagctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacgatctaatcttgtaag-tcaactctaattcttgattgtaattggag........................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 59 Query Start:1 Query End:59 Subject Strand: POSITIVE Subject Start: 1 Subject End: 59 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... taaaacagattgcctccactgaatgtggaggtttttcttcgtgtattggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0627_spr0628|Lactate oxidase:hypothetical protein|POSITIVE:POSITIVE|[636102,636655]|554 HSP 1 e-value: 1.0E-105 bit: 383.0 Len: 229 Query Start:72 Query End:300 Subject Strand: POSITIVE Subject Start: 175 Subject End: 402 .......................................................................ctatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggag........................................................................................................................................................ .......................................................................ctatataaagatatttttcggtcaaatatcttgctagggctttcattttttgctatactggttcagtaattaaataatagagacatttggggtgctttaagctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacgatctaatcttgtaag-tcaactctaattcttgattgtaattggag........................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 59 Query Start:1 Query End:59 Subject Strand: POSITIVE Subject Start: 1 Subject End: 59 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... taaaacagattgcctccactgaatgtggaggtttttcttcgtgtattggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0715_SP_0716|lactate oxidase:transcriptional regulator, putative|POSITIVE:POSITIVE|[681567,682122]|556 HSP 1 e-value: 1.0E-92 bit: 341.0 Len: 228 Query Start:73 Query End:300 Subject Strand: POSITIVE Subject Start: 178 Subject End: 404 ........................................................................tatataaatatatttttcagtcaaatatcttgctagggctttcattttttgctatactggtccagtaattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacgttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattcttgattgtaattggag........................................................................................................................................................ ........................................................................tatataaagatatttttcggtcaaatatcttgctagggctttcattttttgctatactggttcagtagttaaataatagagacatttggggtgctttaggctgagataatacccattgaacctgatacagttaagactggcgaagggaaatgtgaacagttttttcgtatggtgaaatgaacggtctaatcttgtaag-tcaactctaattcttgattgtaattggag........................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 59 Query Start:1 Query End:59 Subject Strand: POSITIVE Subject Start: 1 Subject End: 59 taaaatagcttgcctccacttgatgtggaggtttttcttcgtctataggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... taaaacagattgcctccactgaatgtggaggtttttcttcgtgtattggaagaataaat......................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0624_SPD_0625|thiamine-phosphate pyrophosphorylase:hypothetical protein|POSITIVE:POSITIVE|[646558,647114]|557 HSP 1 e-value: 3.0E-59 bit: 230.0 Len: 147 Query Start:138 Query End:284 Subject Strand: POSITIVE Subject Start: 198 Subject End: 345 .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacg-ttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattc........................................................................................................................................................................ .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaatgtttttttcgtatgtcgaaaagaactgtctaatcttgtaagctgaactctaattc........................................................................................................................................................................ Subject: NC_003098_spr0630_spr0631|Thiamin-phosphate pyrophosphorylase:hypothetical protein|POSITIVE:POSITIVE|[639027,639550]|524 HSP 1 e-value: 3.0E-59 bit: 230.0 Len: 147 Query Start:138 Query End:284 Subject Strand: POSITIVE Subject Start: 198 Subject End: 345 .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacg-ttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaattc........................................................................................................................................................................ .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaatgtttttttcgtatgtcgaaaagaactgtctaatcttgtaagctgaactctaattc........................................................................................................................................................................ Subject: NC_003028_SP_0718_SP_0719|thiamine-phosphate pyrophosphorylase:hypothetical protein|POSITIVE:POSITIVE|[684442,684999]|558 HSP 1 e-value: 1.0E-58 bit: 228.0 Len: 146 Query Start:138 Query End:283 Subject Strand: POSITIVE Subject Start: 198 Subject End: 344 .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaacg-ttttttcgtatggcgaaatgaacaatctaatcttgtaagctaaactctaatt......................................................................................................................................................................... .........................................................................................................................................taattaaataataaagacatttggggtgctttaggctgagatgatacccattgaacctgatacagttaagactggcgaagggaaatgtgaaatgtttttttcgtatgtcgaaaagaactgtctaatcttgtaagctgaactctaatt......................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAUAGCUUGCCUCCACUUGAUGUGGAGGUUUUUCUUCGUCUAUAGGAAGAAUAAAUCACCAUUGAAAUCUAUAUAAAUAUAUUUUUCAGUCAAAUAUCUUGCUAGGGCUUUCAUUUUUUGCUAUACUGGUCCAGUAAUUAAAUAAUAAAGACAUUUGGGGUGCUUUAGGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAACGUUUUUUCGUAUGGCGAAAUGAACAAUCUAAUCUUGUAAGCUAAACUCUAAUUCUUGAUUGUAAUUGGAG .....((((((((((((((.....))))))((((...((((.(((((.((((((....((((.(((((((..((((....))))..)))))))..............(((...(((((((..(((.(((((...))))).........(((((.(((.....))))))))))).)))))))..)))......(((....((((....))))....))).....)))).....)))))).)))))))))..))))...........))))))))..(((((((((......).)))))))) (-76.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUCCAAUUACAAUCAAGAAUUAGAGUUUAGCUUACAAGAUUAGAUUGUUCAUUUCGCCAUACGAAAAAACGUUUCACAUUUCCCUUCGCCAGUCUUAACUGUAUCAGGUUCAAUGGGUAUCAUCUCAGCCUAAAGCACCCCAAAUGUCUUUAUUAUUUAAUUACUGGACCAGUAUAGCAAAAAAUGAAAGCCCUAGCAAGAUAUUUGACUGAAAAAUAUAUUUAUAUAGAUUUCAAUGGUGAUUUAUUCUUCCUAUAGACGAAGAAAAACCUCCACAUCAAGUGGAGGCAAGCUAUUUUA (((.((((.(......))))).)))..((((((.........((.((((..(((((.....))))).))))..))..........((((((.......((((((..(((.(..(((((.........)))))..).))).((((((((((((((.(((...(((((...)))))....))).)))))..((....)).)))))))))................)))))).......))))))....((((((........))))))...(((((((.....))))))).))))))..... (-57.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 290 219 172 72 3 smit:SMT_1785|5end_phenylalanyl-tRNA_synthetase_beta_chain_1763277..1763507_NEGATIVE 283 286 242 225 181 smit:SMT_1057|5end_replicative_DNA_helicase_995316..995546_POSITIVE 282 142 102 81 32 smit:SMT_1636|5end_5-formyltetrahydrofolate_cyclo-ligase_family_protein_1622568..1622798_POSITIVE 280 50 6 154 113 smit:SMT_367|5end_hypothetical_protein_302318..302548_POSITIVE 278 198 157 210 162 smit:SMT_2064|5end_amino_acid_ABC_transporter,_ATP-binding_protein_1972182..1972412_POSITIVE 277 248 201 221 167 smit:SMT_1298|5end_K03811_nicotinamide_mononucleotide_transporter_1260938..1261168_POSITIVE 273 220 171 179 134 smit:SMT_1620|5end_hypothetical_protein_1607240..1607470_NEGATIVE 270 136 92 169 125 smit:SMT_2049|5end_3-oxoacyl-_1959539..1959769_NEGATIVE 270 226 187 63 21 smit:SMT_1999|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1922792..1923022_NEGATIVE 270 226 187 63 21 smit:SMT_1665|5end_cell_wall_surface_anchor_family_protein_1656335..1656565_NEGATIVE 269 219 172 192 134 smit:SMT_923|5end_methionyl-tRNA_formyltransferase_877494..877724_NEGATIVE 268 136 91 184 142 smit:SMT_1543|5end_diphosphomevalonate_decarboxylase_1528024..1528254_NEGATIVE 268 43 3 174 128 smit:SMT_1059|5end_NAD(P)H-flavin_oxidoreductase_997379..997609_POSITIVE 266 217 171 196 149 smit:SMT_125|5end_hypothetical_protein_77664..77894_NEGATIVE 265 49 8 212 168 smit:SMT_1970|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1902023..1902253_POSITIVE 264 227 184 50 9 smit:SMT_2082|5end_ATP-dependent_nuclease_subunit_B_1982286..1982516_NEGATIVE 262 245 207 222 181 smit:SMT_1518|5end_sensor_histidine_kinase_1499009..1499239_NEGATIVE 260 220 181 102 64 smit:SMT_1994|5end_phosphoglycerate_mutase_1920501..1920731_NEGATIVE 260 53 11 213 178 smit:SMT_1053|5end_ABC_transporter_permease_protein_993671..993901_NEGATIVE 259 208 164 129 94 smit:SMT_1835|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1803894..1804124_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 290 205 161 58 18 smit:SMT_2004|3end_K00783_hypothetical_protein_1925489..1925639_POSITIVE 290 219 172 114 45 smit:SMT_1786|3end_phenylalanyl-tRNA_synthetase_beta_chain_1763235..1763385_NEGATIVE 290 205 161 58 18 smit:SMT_86|3end_K00783_hypothetical_protein_17035..17185_NEGATIVE 282 142 102 69 20 smit:SMT_1635|3end_putative_N-acetyldiaminopimelate_deacetylase_1622636..1622786_POSITIVE 278 35 6 149 112 smit:SMT_1581|3end_transcriptional_regulator,_biotin_repressor_family_1573120..1573270_NEGATIVE 266 49 7 67 15 smit:SMT_950|3end_UDP-glucose_4-epimerase_897677..897827_NEGATIVE 260 220 181 68 30 smit:SMT_1995|3end_phosphoglycerate_mutase_1920535..1920685_NEGATIVE 260 216 171 141 103 smit:SMT_763|3end_alpha-amylase_669280..669430_POSITIVE 254 200 152 62 26 smit:SMT_609|3end_laminin-binding_surface_protein_521731..521881_POSITIVE 248 55 13 78 37 smit:SMT_1920|3end_ABC_transporter,_ATP-binding_protein_1862736..1862886_NEGATIVE 248 180 131 73 13 smit:SMT_889|3end_K02029_polar_amino_acid_transport_system_permease_protein_837023..837173_POSITIVE 247 197 151 67 2 smit:SMT_1662|3end_histidine_protein_kinase_1651305..1651455_NEGATIVE 247 43 8 105 67 smit:SMT_397|3end_NAD(+)_synthetase_327423..327573_POSITIVE 247 136 91 124 74 smit:SMT_209|3end_acetyltransferase,_GNAT_family_143448..143598_POSITIVE 246 49 5 75 31 smit:SMT_1573|3end_MutT/NUDIX_family_protein_1566960..1567110_POSITIVE 246 49 5 141 87 smit:SMT_1244|3end_putative_repressor_protein_1205149..1205299_POSITIVE 243 215 171 65 23 smit:SMT_1827|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1797722..1797872_POSITIVE 243 134 91 126 71 smit:SMT_1652|3end_Cof_family_protein_1641408..1641558_POSITIVE 242 213 171 62 23 smit:SMT_1929|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1869690..1869840_NEGATIVE 242 220 171 65 15 smit:SMT_1113|3end_hypothetical_protein_1051811..1051961_NEGATIVE