Origin IGS: tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tctttttctcctaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga Mask Tandem Repeat Region ================================================ tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Find is-nt database================================================ Query_seq: SMT_384:SMT_385|SMT_384:SMT_385:hypothetical protein:hypothetical protein:->->:319921..320034 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_384:SMT_385|SMT_384:SMT_385:hypothetical protein:hypothetical protein:->->:319921..320034 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_384:SMT_385|SMT_384:SMT_385:hypothetical protein:hypothetical protein:->->:319921..320034 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: - Start: 3 End: 101 .. I F I L S C V L F S A A P Q V Q T R Y P S A S T T Q I Q N E F L M ............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_384:SMT_385|SMT_384:SMT_385:hypothetical protein:hypothetical protein:->->:319921..320034 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Intra-Species Hit: Count: 39 Min: 1 Max: 114 Len: 114 Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 1.0E-58 bit: 226.0 Len: 114 Query Start:1 Query End:114 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 1.0E-58 bit: 226.0 Len: 114 Query Start:1 Query End:114 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 1.0E-58 bit: 226.0 Len: 114 Query Start:1 Query End:114 Subject Strand: POSITIVE Subject Start: 1 Subject End: 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 4.0E-52 bit: 204.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 222 Subject End: 324 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 7.0E-51 bit: 200.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 30 Subject End: 132 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-49 bit: 196.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 25 Subject End: 127 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 2.0E-48 bit: 192.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 4 Subject End: 104 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 563 Subject End: 662 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 79 Subject End: 182 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag.......... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 6.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 107 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 6.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 103 Subject End: 205 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 6.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 150 Subject End: 252 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 1.0E-43 bit: 176.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 291 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat............. Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 4.0E-43 bit: 174.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 149 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 2.0E-42 bit: 172.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 204 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta........... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 6.0E-42 bit: 170.0 Len: 102 Query Start:1 Query End:102 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 205 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatt............ tcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtatt............ Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 110 Subject End: 209 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 82 Subject End: 181 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 136 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagaatta........... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 152 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagcatta........... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 6.0E-39 bit: 161.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 276 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtat............. Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 1.0E-36 bit: 153.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 49 Subject End: 148 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 6.0E-36 bit: 151.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 118 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta.............. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 6.0E-36 bit: 151.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 99 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 2.0E-35 bit: 149.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 118 Subject End: 219 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 1.0E-33 bit: 143.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 129 Subject End: 227 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 1.0E-33 bit: 143.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 56 Subject End: 154 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta.............. Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 5.0E-27 bit: 121.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 261 Subject End: 360 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtat............. Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 3.0E-22 bit: 105.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 4 Subject End: 103 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagtat............. Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 5.0E-21 bit: 101.0 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 136 Subject End: 186 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... HSP 2 e-value: 6.0E-8 bit: 58.0 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 37 Subject End: 77 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaaaagcaaactatgaagctacccgcagg......................................................................... Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 72 Subject End: 115 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 4.0E-9 bit: 61.9 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 216 Subject End: 265 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcaacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 49 Query Start:53 Query End:101 Subject Strand: POSITIVE Subject Start: 116 Subject End: 164 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat............. HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 18 Subject End: 61 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg...................................................................... Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 101 Query Start:3 Query End:103 Subject Strand: NEGATIVE Subject Start: 147 Subject End: 246 ..aatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ..aatgaaaatcaaaaagcaaactaggaagctagtcgcaagctgtgctgaagtacagtgaggcgacattgacgtagtttgaa-gagattttcgaaaagtatta........... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 37 Query Start:1 Query End:37 Subject Strand: POSITIVE Subject Start: 155 Subject End: 191 tcaatgaaaatcaaagagcaaactaggaagctagccg............................................................................. tcaatgaaaatcaaagagcaaactaggaagctagccg............................................................................. HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 48 Query Start:53 Query End:100 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. ....................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta.............. Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 162 Subject End: 202 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagaccaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 35 Query Start:67 Query End:101 Subject Strand: POSITIVE Subject Start: 237 Subject End: 271 ..................................................................gctgacgtggtttgaatttgattttcgaagagtat............. ..................................................................gctgacgtggtttgaatttgattttcgaagagtat............. Subject: smit_SMT_319_SMT_320|K02356 elongation factor EF-P:alcohol dehydrogenase, zinc-containing|NEGATIVE:NEGATIVE|[258955,259330]|376 HSP 1 e-value: 3.0E-10 bit: 65.9 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 165 Subject End: 205 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatggaaatcaaagagcaaactaggaagcaagccgcagg......................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 264 Subject End: 313 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaacgtgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Inter-species Hit: Count: 53 Min: 1 Max: 114 Len: 114 Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-48 bit: 192.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 193 Subject End: 293 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 4.0E-46 bit: 184.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 72 Subject End: 172 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagtat............. Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 100 Query Start:1 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.............. Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 65 Subject End: 164 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta.............. Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 1.0E-43 bit: 176.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 14 Subject End: 114 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat............. Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 2.0E-42 bit: 172.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 120 Subject End: 222 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagtatta........... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 65 Subject End: 164 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta.............. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 107 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtattag.......... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 65 Subject End: 164 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta.............. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 9.0E-41 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 107 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtattag.......... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 91 Subject End: 193 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 58 Subject End: 160 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 97 Subject End: 199 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 6.0E-39 bit: 161.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 47 Subject End: 146 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 3.0E-34 bit: 145.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 14 Subject End: 113 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 8.0E-32 bit: 137.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 245 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat............. Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 8.0E-32 bit: 137.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 245 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat............. Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 1.0E-30 bit: 133.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 224 Subject End: 325 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagcgagccgcaggctgtacttgagtacggtaaagcaaagctgacgtggtttgaa-gagattttcaaagagtatta........... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 2.0E-29 bit: 129.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 245 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. tcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagtat............. Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 3.0E-28 bit: 125.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 214 Subject End: 315 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtatta........... Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 3.0E-28 bit: 125.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 214 Subject End: 315 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... tcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtatta........... Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 223 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 1.0E-9 bit: 63.9 Len: 52 Query Start:53 Query End:104 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 79 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_008533_SPD_0549_SPD_0550|lipoprotein, putative:ribosomal protein L11|POSITIVE:POSITIVE|[561971,562278]|308 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 180 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 6.0E-8 bit: 58.0 Len: 45 Query Start:56 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 .......................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. .......................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 223 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 1.0E-9 bit: 63.9 Len: 52 Query Start:53 Query End:104 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 79 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_003098_spr0554_spr0555|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[554441,554748]|308 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 180 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 6.0E-8 bit: 58.0 Len: 45 Query Start:56 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 .......................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. .......................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 222 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 1.0E-9 bit: 63.9 Len: 52 Query Start:53 Query End:104 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 79 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_003028_SP_0629_SP_0630|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[596487,596794]|308 HSP 1 e-value: 7.0E-17 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 180 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... HSP 2 e-value: 6.0E-8 bit: 58.0 Len: 45 Query Start:56 Query End:100 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 .......................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. .......................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 543 Subject End: 593 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta........... HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 648 Subject End: 691 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaaactagccgtaggctg...................................................................... Subject: NC_008533_SPD_0790_SPD_0791|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[809280,810395]|1116 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 247 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:53 Query End:101 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 49 Query Start:53 Query End:101 Subject Strand: NEGATIVE Subject Start: 1860 Subject End: 1908 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat............. HSP 2 e-value: 2.0E-14 bit: 79.8 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2006 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg...................................................................... Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 313 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 52 Query Start:53 Query End:104 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 169 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 381 Subject End: 421 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 6.0E-8 bit: 58.0 Len: 45 Query Start:57 Query End:101 Subject Strand: POSITIVE Subject Start: 484 Subject End: 527 ........................................................gtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ........................................................gtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_003098_spr0797_spr0798|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[801749,802864]|1116 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 247 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:53 Query End:101 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_003098_spr0696_spr0697|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[698465,698791]|327 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 47 Subject End: 87 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 191 Subject End: 240 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtagggcgacgatgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 313 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 52 Query Start:53 Query End:104 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 169 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_003028_SP_0897_SP_0899|pyruvate kinase:hypothetical protein|POSITIVE:POSITIVE|[852843,854645]|1803 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 203 Subject End: 243 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:53 Query End:101 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 145 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 47 Subject End: 87 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 4.0E-9 bit: 61.9 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 326 Subject End: 375 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtagggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_003028_SP_0624_SP_0626|hypothetical protein:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[592218,592819]|602 HSP 1 e-value: 4.0E-15 bit: 81.8 Len: 61 Query Start:54 Query End:114 Subject Strand: POSITIVE Subject Start: 100 Subject End: 159 .....................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaggagaaaaaga .....................................................acggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattagaagaaaaaga HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagtcgtaggctg...................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 2.0E-14 bit: 79.8 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 173 Subject End: 272 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta.............. Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 2.0E-14 bit: 79.8 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 173 Subject End: 272 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. tcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta.............. Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 2.0E-14 bit: 79.8 Len: 40 Query Start:1 Query End:40 Subject Strand: POSITIVE Subject Start: 264 Subject End: 303 tcaatgaaaatcaaagagcaaactaggaagctagccgcag.......................................................................... tcaatgaaaatcaaagagcaaactaggaagctagccgcag.......................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:53 Query End:101 Subject Strand: POSITIVE Subject Start: 406 Subject End: 453 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat............. Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 7.0E-14 bit: 77.8 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 102 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta........... HSP 2 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 202 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg...................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 7.0E-14 bit: 77.8 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 102 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta........... HSP 2 e-value: 1.0E-9 bit: 63.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 202 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaataaaaatcaaagagcaaactagaaaactagccgcaggctg...................................................................... Subject: NC_003098_spr1922_spr1923|Maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[1905655,1905945]|291 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 41 Query Start:1 Query End:41 Subject Strand: POSITIVE Subject Start: 139 Subject End: 179 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagtgcaaactaggaagctagccgcagg......................................................................... HSP 2 e-value: 4.0E-9 bit: 61.9 Len: 51 Query Start:53 Query End:103 Subject Strand: POSITIVE Subject Start: 238 Subject End: 287 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaaaagtatta........... Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 37 Query Start:1 Query End:37 Subject Strand: POSITIVE Subject Start: 120 Subject End: 156 tcaatgaaaatcaaagagcaaactaggaagctagccg............................................................................. tcaatgaaaatcaaagagcaaactaggaagctagccg............................................................................. HSP 2 e-value: 2.0E-7 bit: 56.0 Len: 52 Query Start:53 Query End:104 Subject Strand: POSITIVE Subject Start: 264 Subject End: 314 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag.......... ....................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtattag.......... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 210 tcaatgaaaatcaaagagcaaactaggaagctagccgcagg......................................................................... tcaatgaaaatcaaagagcaaactaggaagctaaccgcagg......................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 16 Subject End: 65 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 149 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg...................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_008533_SPD_0543_SPD_0544|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[557592,557754]|163 HSP 1 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagtcgtaggctg...................................................................... HSP 2 e-value: 4.0E-9 bit: 61.9 Len: 47 Query Start:54 Query End:100 Subject Strand: POSITIVE Subject Start: 100 Subject End: 145 .....................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. .....................................................acggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 149 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg...................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_003098_spr0548_spr0549|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[550062,550224]|163 HSP 1 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactaggaagctagtcgtaggctg...................................................................... HSP 2 e-value: 4.0E-9 bit: 61.9 Len: 47 Query Start:54 Query End:100 Subject Strand: POSITIVE Subject Start: 100 Subject End: 145 .....................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.............. .....................................................acggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.............. Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 4.0E-12 bit: 71.9 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 149 tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg...................................................................... tcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg...................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 51 Query Start:53 Query End:103 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ....................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........... ....................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........... Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 2.0E-11 bit: 69.9 Len: 43 Query Start:59 Query End:101 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 147 ..........................................................aaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ..........................................................aaggcgacgttgacgtggtttgaattggattttcgaagagtat............. HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 38 Query Start:1 Query End:38 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 297 tcaatgaaaatcaaagagcaaactaggaagctagccgc............................................................................ tcaatgaaaatcaaagaacaaactaggtaactagccgc............................................................................ Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 2.0E-11 bit: 69.9 Len: 43 Query Start:59 Query End:101 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 147 ..........................................................aaggcgacgctgacgtggtttgaatttgattttcgaagagtat............. ..........................................................aaggcgacgttgacgtggtttgaattggattttcgaagagtat............. HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 38 Query Start:1 Query End:38 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 297 tcaatgaaaatcaaagagcaaactaggaagctagccgc............................................................................ tcaatgaaaatcaaagaacaaactaggtaactagccgc............................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGCUGUACUUGAGUACGGUAAGGCGACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUAGGAGAAAAAGA ((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))................. (-39.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUUUUUCUCCUAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUCGCCUUACCGUACUCAAGUACAGCCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGA ......................((((((((((..(((((...(..((((((((....(.((((....)))).)...)))))..)))..)..)))))...))))))))))..... (-25.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1079 80 31 200 151 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 1079 80 31 187 138 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 996 80 31 201 152 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 996 80 31 226 177 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 992 80 31 210 161 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 991 70 21 225 176 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 957 70 21 203 154 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 945 60 11 229 180 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 911 59 11 231 183 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 899 60 11 178 129 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 837 100 51 52 3 smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE 764 48 1 164 119 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 762 48 1 154 109 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 741 48 1 221 176 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 696 42 1 231 190 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 656 100 53 84 38 smit:SMT_958|5end_hypothetical_protein_predicted_by_Glimmer/Critica_905052..905282_POSITIVE 647 48 1 196 152 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 622 100 53 219 173 smit:SMT_677|5end_DNA_topoisomerase_I_587318..587548_NEGATIVE 606 48 1 161 116 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 565 48 1 167 113 smit:SMT_775|5end_alpha-acetolactate_decarboxylase_685972..686202_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1079 80 31 66 17 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 1051 80 31 70 21 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 1050 80 31 71 22 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 1022 80 31 71 22 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 1021 80 31 66 17 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 999 80 31 70 21 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 996 80 31 71 22 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 996 80 31 70 21 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 991 80 34 47 1 smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE 970 80 31 70 21 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 970 80 31 70 21 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 936 80 31 52 3 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 933 60 13 48 1 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 921 80 31 63 14 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 896 60 11 50 1 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 772 100 53 90 43 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 730 100 51 64 17 smit:SMT_1815|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1788899..1789049_NEGATIVE 729 98 51 52 5 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 692 100 54 46 1 smit:SMT_1872|3end_K03217_preprotein_translocase_YidC_subunit_1830883..1831033_NEGATIVE 678 100 51 84 37 smit:SMT_124|3end_hypothetical_protein_75590..75740_NEGATIVE