Origin IGS: aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttatgaagaaaaaaatactgattattttcgttctatatctgatcatgtctatccttctttatccgcttagggagagtacttggtatcatctattttataccatagcctatatgattgcggttgtgatctattttgctttaactaaaaagaaaggagaaaagaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttcttttctcctttctttttagttaaagcaaaatagatcacaaccgcaatcatataggctatggtataaaatagatgataccaagtactctccctaagcggataaagaaggatagacatgatcagatatagaacgaaaataatcagtatttttttcttcataaaatttcctcctaaatgtatgctttatcttagttgagctacaacctttacactgctagtatagcactcattttatctttggaacactcaaatcataaatggtcatcaaaacatcttgaattgtaaaaaattaaaaaagcaagcatgaaaaacatacttgccctttacaccatattgataccaacttaatttgtagattttttatcctgctatcacatatcattttgacaggcgaaacaatattaaagaaactcctctgtagattaaactagcgataaaaatctctttatctaattagatctatctttattcttctttggagattttaaaaatttttccctaattaaagaagtaataaaagaaacaaacataccaacaacaaaaacaataagaaaacttttgaaatccataattacctccaagtacagctcctctacatgcaggcttaagccgttaagcaaccataatagacaattgtaacattgtttttgcattcacgaggaatacctctttttactttcgtcctattacaaccttaataaggttagtatactactattttttaacattttccatccaaatcacaaatggtcatcaaaacatctcgaattgtaagaaatttaaaaaagcaagcatgaaaaacatacttgccctatggaaatttaacaatgtaaaaatacatcgaaagctattcacccttacttccgtctgttatgatagattctcatgatcgcaaccaggatacaggctgtcccacctgccaaaaccaggagggtaatgataatgttgaggatttcaggcgtcctctctattctgttgacaagacggactaaagacaatactgtcaataagagtagagctactgactctgtcccaattaaagaagtcagtcggttctcaaccgcatataaaaaggacggtaacataacacaggctatagcaatcacaaacagattgctccccgtttcttcccccttgttcaccacggaaatcatgagaagattcgatgctatgatcaacgtagaacagacgataaaataggatttcttattcatttaatatacctcgtatactatggtaaaaatcaaactggataaagacaaaacttatctgttagcttctcccaattcttttttcacaaatctt Mask Tandem Repeat Region ================================================ aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttatgaagaaaaaaatactgattattttcgttctatatctgatcatgtctatccttctttatccgcttagggagagtacttggtatcatctattttataccatagcctatatgattgcggttgtgatctattttgctttaactaaaaagaaaggagaaaagaa Find is-nt database================================================ Query_seq: SMT_349:SMT_350|SMT_349:SMT_350:sensor histidine kinase (homolog to BlpH Spn):immunity protein BlpL:->->:288697..290003 1307 aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttatgaagaaaaaaatactgattattttcgttctatatctgatcatgtctatccttctttatccgcttagggagagtacttggtatcatctattttataccatagcctatatgattgcggttgtgatctattttgctttaactaaaaagaaaggagaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_349:SMT_350|SMT_349:SMT_350:sensor histidine kinase (homolog to BlpH Spn):immunity protein BlpL:->->:288697..290003 1307 aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttatgaagaaaaaaatactgattattttcgttctatatctgatcatgtctatccttctttatccgcttagggagagtacttggtatcatctattttataccatagcctatatgattgcggttgtgatctattttgctttaactaaaaagaaaggagaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_349:SMT_350|SMT_349:SMT_350:sensor histidine kinase (homolog to BlpH Spn):immunity protein BlpL:->->:288697..290003 1307 aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttatgaagaaaaaaatactgattattttcgttctatatctgatcatgtctatccttctttatccgcttagggagagtacttggtatcatctattttataccatagcctatatgattgcggttgtgatctattttgctttaactaaaaagaaaggagaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 1147 Max: 1305 Len: 159 Subject: UniRef90_Q9EW64 Cluster: Hypothetical protein pncG; n=1; Streptococcus pneumoniae|Rep: Hypothetical protein pncG - Streptococcus pneumoniae HSP 1 e-value: 3.0E-18 bit: 95.9 Len: 159 Query Start:1147 Query End:1305 Subject Strand: null Subject Start: 1 Subject End: 53 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K K K I L I I F V L Y L I M S I L L Y P L R E S T W Y H L F Y T I A Y M I A V V I Y F A L T K K K G E K .. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K K K I L I I F V L Y L I M S I F L Y P L R E S A W Y Q L F Y T I A Y V I A V M I Y F A I N K K K G E K .. Subject: UniRef90_Q00MV5 Cluster: SPO535; n=1; Streptococcus pneumoniae|Rep: SPO535 - Streptococcus pneumoniae HSP 1 e-value: 7.0E-18 bit: 94.7 Len: 159 Query Start:1147 Query End:1305 Subject Strand: null Subject Start: 1 Subject End: 53 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K K K I L I I F V L Y L I M S I L L Y P L R E S T W Y H L F Y T I A Y M I A V V I Y F A L T K K K G E K .. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K K K I L I I F A L Y L I M S I F L Y P L R E S I W Y N L F Y T I A Y V I A V M I Y F A L T K K K G A K .. aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaa Predict ORF larger than 30AA ================================================ Protein_Len: 48 Strand: + Start: 103 End: 246 ...................................................................................................... M L F Y R L F Y V D H S I E S S H D F R G E Q G G R N G E Q S V C D C Y S L C Y V T V L F I C G ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 92 End: 445 ........................................................................................... M N K K S Y F I V C S T L I I A S N L L M I S V V N K G E E T G S N L F V I A I A C V M L P S F L Y A V E N R L T S L I .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 451 End: 549 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M N S F R C I F T L L N F H R A S M F F M L A F L N F L Q F E M F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 653 End: 853 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Q K Q C Y N C L L W L L N G L S L H V E E L Y L E V I M D F K S F L I V F V V G M F V S F I T S L I R E K F L K S P K ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 906 End: 1013 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V S P V K M I C D S R I K N L Q I K L V S I W C K G Q V C F S C L L F ...................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 949 End: 1038 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y K L S W Y Q Y G V K G K Y V F H A C F F N F L Q F K M F ............................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 1119 End: 1211 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K H T F R R K F Y E E K N T D Y F R S I S D H V Y P S L S A ................................................................................................ Protein_Len: 60 Strand: + Start: 1126 End: 1305 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H L G G N F M K K K I L I I F V L Y L I M S I L L Y P L R E S T W Y H L F Y T I A Y M I A V V I Y F A L T K K K G E K .. Protein_Len: 30 Strand: - Start: 1024 End: 1113 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L E L H K S S W K H N S H E L S L I L A I S A T Y L N Y S M .................................................................................................................................................................................................. Protein_Len: 32 Strand: - Start: 878 End: 973 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N L R C L L K K L I T E G T L I I H S L L I F F R C I L N T D M .............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 670 End: 804 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L Q R N H N S L P K L R C T S S S Y K S T I I S K L L K R I T K T T P I N T E K I V E K M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 535 End: 654 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L E L H K S S W K H N P H F I N F F L L I S V K N L N Y Y S S L L F L Y E E H M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 420 End: 683 ................................................................................................................................................................................................................................................................................................................................................................................................................................... N K M S A K K F K K C N S I N Q H G N T I Q I S F T L F Y Y Y V L R I L T T I P R F Y F S T N R T F A F V I N C N D I M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: - Start: 317 End: 466 ............................................................................................................................................................................................................................................................................................................................ D T K D V S Y L P R R F D E V N D N G E Q N Q C T P C G T D Q N R D H S D I M V S P L L P S Y S E M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 109 End: 426 ............................................................................................................ S F R S V E K I P V S D T A R S K N V T N D K T R R T L L I S L V G S I R L M I M V R R T K A P P V A Q I R T A I M L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 53 End: 193 .................................................... G T Q N K G Y Y V L Y I L H I L F G I K D D T R R Q D Y C R I K E H N G H H V L P F F R P A M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 43 End: 72 ..........................................TTTGTCTTTATCCAGTTTGATTTTTACCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 332 End: 361 ...........................................................................................................................................................................................................................................................................................................................................GTTGAGGATTTCAGGCGTCCTCTCTATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 44 HP_score: -2.4 Tail_Score: -3.27382 Start: 340 End: 358 Full_Region: ggtaatgataatgtt gaggat ttcaggc gtcctc tctattctgttgaca ...................................................................................................................................................................................................................................................................................................................................................gaggatttcaggcgtcctc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 95 HP_score: -8.5 Tail_Score: -5.25805 Start: 496 End: 518 Full_Region: TTAAATTTCCATAGG GCAAGTATG TTTTT CATGCTTGC TTTTTTAAATTTCTT ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTATGTTTTTCATGCTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -4.9 Tail_Score: -5.15117 Start: 589 End: 601 Full_Region: caaccttaataaggt tagta tac tacta ttttttaacattttc ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tagtatactacta.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 81 HP_score: -5.8 Tail_Score: -5.01811 Start: 637 End: 648 Full_Region: tgtttttgcattcac gagg aata cctc tttttactttcgtcc ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaggaatacctc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 42 HP_score: -2.8 Tail_Score: -2.78422 Start: 856 End: 873 Full_Region: gtagattaaactagc gataaa aatctc tttatc taattagatctatct .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gataaaaatctctttatc.................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 41 HP_score: -2.8 Tail_Score: -2.74248 Start: 985 End: 1009 Full_Region: gtaaaaaattaaaaa agcaagcatg aaaaa catacttgcc ctttacaccatattg ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcaagcatgaaaaacatacttgcc.......................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 95 HP_score: -8.5 Tail_Score: -5.59502 Start: 986 End: 1008 Full_Region: AATATGGTGTAAAGG GCAAGTATG TTTTT CATGCTTGC TTTTTTAATTTTTTA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTATGTTTTTCATGCTTGC........................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SMT_349:SMT_350|SMT_349:SMT_350:sensor histidine kinase (homolog to BlpH Spn):immunity protein BlpL:->->:288697..290003 1307 aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaagttttcttattgtttttgttgttggtatgtttgtttcttttattacttctttaattagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgcttttttaattttttacaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaa Intra-Species Hit: Count: 1 Min: 1 Max: 1146 Len: 1146 Subject: smit_SMT_349_SMT_350|sensor histidine kinase (homolog to BlpH Spn):immunity protein BlpL|POSITIVE:POSITIVE|[288697,290003]|1307 HSP 1 e-value: 0.0 bit: 1485.0 Len: 749 Query Start:1 Query End:749 Subject Strand: POSITIVE Subject Start: 1 Subject End: 749 aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aagatttgtgaaaaaagaattgggagaagctaacagataagttttgtctttatccagtttgatttttaccatagtatacgaggtatattaaatgaataagaaatcctattttatcgtctgttctacgttgatcatagcatcgaatcttctcatgatttccgtggtgaacaagggggaagaaacggggagcaatctgtttgtgattgctatagcctgtgttatgttaccgtcctttttatatgcggttgagaaccgactgacttctttaattgggacagagtcagtagctctactcttattgacagtattgtctttagtccgtcttgtcaacagaatagagaggacgcctgaaatcctcaacattatcattaccctcctggttttggcaggtgggacagcctgtatcctggttgcgatcatgagaatctatcataacagacggaagtaagggtgaatagctttcgatgtatttttacattgttaaatttccatagggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaatagtagtatactaaccttattaaggttgtaataggacgaaagtaaaaagaggtattcctcgtgaatgcaaaaacaatgttacaattgtctattatggttgcttaacggcttaagcctgcatgtagaggagctgtacttggaggtaattatggatttcaaaa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-112 bit: 408.0 Len: 206 Query Start:803 Query End:1008 Subject Strand: POSITIVE Subject Start: 803 Subject End: 1008 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgc........................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attagggaaaaatttttaaaatctccaaagaagaataaagatagatctaattagataaagagatttttatcgctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaagggcaagtatgtttttcatgcttgc........................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-63 bit: 246.0 Len: 124 Query Start:1023 Query End:1146 Subject Strand: POSITIVE Subject Start: 1023 Subject End: 1146 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaatttt................................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acaattcaagatgttttgatgaccatttatgatttgagtgttccaaagataaaatgagtgctatactagcagtgtaaaggttgtagctcaactaagataaagcatacatttaggaggaaatttt................................................................................................................................................................. HSP 4 e-value: 2.0E-23 bit: 113.0 Len: 77 Query Start:493 Query End:569 Subject Strand: POSITIVE Subject Start: 983 Subject End: 1058 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggcaagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agggcaagtatgtttttcatgcttgctttttt-aattttttacaattcaagatgttttgatgaccatttatgatttg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 5 e-value: 3.0E-6 bit: 56.0 Len: 36 Query Start:1023 Query End:1058 Subject Strand: POSITIVE Subject Start: 534 Subject End: 569 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acaattcaagatgttttgatgaccatttatgatttg......................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acaattcgagatgttttgatgaccatttgtgatttg......................................................................................................................................................................................................................................................... Inter-species Hit: Count: 1 Min: 498 Max: 1006 Len: 509 Subject: NC_003028_SP_0542_SP_0543|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[516060,516699]|640 HSP 1 e-value: 3.0E-31 bit: 139.0 Len: 133 Query Start:874 Query End:1006 Subject Strand: POSITIVE Subject Start: 147 Subject End: 279 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctagtttaatctacagaggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggataaaaaatctacaaattaagttggtatcaatatggtgtaaag-ggcaagtatgtttttcatgctt............................................................................................................................................................................................................................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctagcttaatttacaggggagtttctttaatattgtttcgcctgtcaaaatgatatgtgatagcaggatgaaaagtctacaaa-caagttggtatcaatacaatataaagaggaaagtatgtttttaatgctt............................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 91 Query Start:498 Query End:588 Subject Strand: POSITIVE Subject Start: 261 Subject End: 351 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtatgtttttcatgcttgcttttttaaatttcttacaattcgagatgttttgatgaccatttgtgatttggatggaaaatgttaaaaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtatgtttttaatgcttactttttaaattttttaacaattcaagatgtttcgatgacaattcaagatttggatgaaaaattttaaaaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUAUGUUUUUCAUGCUUGCUUUUUUAAAUUUCUUACAAUUCGAGAUGUUUUGAUGACCAUUUGUGAUUUGGAUGGAAAAUGUUAAAAAAUAGUAGUAUACUAACCUUAUUAAGGUUGUAAUAGGACGAAAGUAAAAAGAGGUAUUCCUCGUGAAUGCAAAAACAAUGUUACAAUUGUCUAUUAUGGUUGCUUAACGGCUUAAGCCUGCAUGUAGAGGAGCUGUACUUGGAGGUAAUUAUGGAUUUCAAAAGUUUUCUUAUUGUUUUUGUUGUUGGUAUGUUUGUUUCUUUUAUUACUUCUUUAAUUAGGGAAAAAUUUUUAAAAUCUCCAAAGAAGAAUAAAGAUAGAUCUAAUUAGAUAAAGAGAUUUUUAUCGCUAGUUUAAUCUACAGAGGAGUUUCUUUAAUAUUGUUUCGCCUGUCAAAAUGAUAUGUGAUAGCAGGAUAAAAAAUCUACAAAUUAAGUUGGUAUCAAUAUGGUGUAAAGGGCAAGUAUGUUUUUCAUGCUU (((((((.....((((((((((((((...(((((.........)))))...((((((.(((....(((((((..((((.....(((((((.(((((...))))).(((.(((((((..(((((((((.((((.((((..((((....))))......((((((((((((..((..(((....((((((((((((.(((((((....(((....)))..)))))))......))))))))))))....)))..)).....))))))))))))..........)))))))))))))))))..))))))).)))......)))))))....))))..............(((((.........(((((((((((...((..(((......)))..)).)))))))))))...(((((((((.((((.....)))).)))).)))))........))))))))))))...)))))))))........)))))))))))))).....))))))) (-122.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGCAUGAAAAACAUACUUGCCCUUUACACCAUAUUGAUACCAACUUAAUUUGUAGAUUUUUUAUCCUGCUAUCACAUAUCAUUUUGACAGGCGAAACAAUAUUAAAGAAACUCCUCUGUAGAUUAAACUAGCGAUAAAAAUCUCUUUAUCUAAUUAGAUCUAUCUUUAUUCUUCUUUGGAGAUUUUAAAAAUUUUUCCCUAAUUAAAGAAGUAAUAAAAGAAACAAACAUACCAACAACAAAAACAAUAAGAAAACUUUUGAAAUCCAUAAUUACCUCCAAGUACAGCUCCUCUACAUGCAGGCUUAAGCCGUUAAGCAACCAUAAUAGACAAUUGUAACAUUGUUUUUGCAUUCACGAGGAAUACCUCUUUUUACUUUCGUCCUAUUACAACCUUAAUAAGGUUAGUAUACUACUAUUUUUUAACAUUUUCCAUCCAAAUCACAAAUGGUCAUCAAAACAUCUCGAAUUGUAAGAAAUUUAAAAAAGCAAGCAUGAAAAACAUACUU (((.(((.....(((.(((((.............(((((((((......(((((.(((((.............................((((((((.......(((((...(((((.(((((((.((.((..((((((......)))))))).)).))))))).((((((((((((((((((...........)))))......))))))).))))))....................((((((((((...........((.....))..............(((((....((((.(((...((((((....))))))...)))..))))...)))))..)))))))))).......))))).....)))))....))))).)))..((((((((.....))))).)))............................)))))))))))))).)))))........(((((......)))))......))))).))).....))).))) (-76.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 378 239 194 222 179 smit:SMT_1029|5end_K02027_multiple_sugar_transport_system_substrate-binding_protein_965632..965862_NEGATIVE 353 235 191 113 63 smit:SMT_1255|5end_cell_division_protein_FtsH_1221811..1222041_NEGATIVE 313 248 204 227 187 smit:SMT_1749|5end_anthranilate_synthase_component_II_1727434..1727664_POSITIVE 313 230 182 214 169 smit:SMT_1144|5end_K02026_multiple_sugar_transport_system_permease_protein_1088222..1088452_POSITIVE 311 225 188 58 7 smit:SMT_1554|5end_isoleucyl-tRNA_synthetase_1537040..1537270_POSITIVE 309 216 175 77 33 smit:SMT_1822|5end_hypothetical_protein_1794452..1794682_POSITIVE 287 229 186 147 112 smit:SMT_1752|5end_N-(5'-phosphoribosyl)-anthranilate_isomerase_1729772..1730002_POSITIVE 286 60 11 129 87 smit:SMT_769|5end_spermidine/putrescine-binding_periplasmic_protein_680589..680819_NEGATIVE 283 228 184 155 109 smit:SMT_335|5end_glutamine_synthetase_273753..273983_POSITIVE 276 220 177 82 40 smit:SMT_1457|5end_16S_rRNA_m(2)G_1207_methyltransferase_1440209..1440439_NEGATIVE 274 236 199 66 30 smit:SMT_1907|5end_phosphate-binding_protein_1854105..1854335_POSITIVE 272 230 187 196 141 smit:SMT_1454|5end_cytidine_deaminase_1437886..1438116_NEGATIVE 271 230 187 205 160 smit:SMT_1306|5end_alpha-glycerophosphate_oxidase_1269767..1269997_POSITIVE 269 234 196 47 14 smit:SMT_411|5end_thymidylate_synthase_355496..355726_POSITIVE 266 236 192 90 43 smit:SMT_929|5end_hypothetical_protein_883342..883572_NEGATIVE 266 236 192 214 167 smit:SMT_928|5end_hypothetical_protein_883218..883448_NEGATIVE 266 226 182 198 162 smit:SMT_630|5end_phosphoserine_phosphatase_535459..535689_POSITIVE 264 230 186 186 139 smit:SMT_1940|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1876589..1876819_POSITIVE 263 230 189 226 185 smit:SMT_2170|5end_hypothetical_protein_2042242..2042472_NEGATIVE 262 212 186 178 157 smit:SMT_538|5end_DNA-binding_response_regulator_CiaR_455337..455567_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 353 235 191 69 19 smit:SMT_1256|3end_ketol-acid_reductoisomerase_1221855..1222005_NEGATIVE 309 216 175 60 16 smit:SMT_1821|3end_Mg2+_and_Co2+_transporter_1794515..1794665_POSITIVE 286 60 11 132 90 smit:SMT_770|3end_K02053_spermidine/putrescine_transport_system_permease_protein_680586..680736_NEGATIVE 283 228 184 118 72 smit:SMT_334|3end_K03713_MerR_family_transcriptional_regulator,_glutamine_synthetase_repressor_273796..273946_POSITIVE 275 447 419 142 114 smit:SMT_976|3end_hypothetical_protein_924164..924314_NEGATIVE 268 232 196 69 25 smit:SMT_2067|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1974216..1974366_POSITIVE 266 226 182 139 103 smit:SMT_629|3end_glycogen_synthase_535480..535630_POSITIVE 262 212 186 129 108 smit:SMT_537|3end_oxidoreductase,_aldo/keto_reductase_family_455368..455518_POSITIVE 259 236 197 43 1 smit:SMT_930|3end_ATP-dependent_RNA_helicase_883389..883539_NEGATIVE 258 220 181 38 1 smit:SMT_823|3end_putative_mucus_binding_protein_740995..741145_NEGATIVE 253 254 212 151 102 smit:SMT_774|3end_hypothetical_protein_684479..684629_NEGATIVE 253 319 272 121 72 smit:SMT_277|3end_capsular_polysaccharide_biosynthesis_homolog_YwqC_220333..220483_POSITIVE 252 230 184 86 27 smit:SMT_1609|3end_hypothetical_protein_1598654..1598804_POSITIVE 252 225 187 71 30 smit:SMT_1459|3end_K02037_phosphate_transport_system_permease_protein_1441519..1441669_POSITIVE 252 233 198 35 3 smit:SMT_545|3end_hypothetical_protein_predicted_by_Glimmer/Critica_461424..461574_POSITIVE 251 228 198 42 5 smit:SMT_749|3end_shikimate_kinase_653495..653645_NEGATIVE 251 214 173 148 96 smit:SMT_558|3end_K09014_Fe-S_cluster_assembly_protein_SufB_476747..476897_POSITIVE 250 232 196 66 31 smit:SMT_1580|3end_MutT/NUDIX_family_protein_1573153..1573303_POSITIVE 249 225 184 150 114 smit:SMT_1539|3end_sensor_histidine_kinase,_putative_1523315..1523465_NEGATIVE 248 60 11 129 74 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE