Origin IGS: gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnncgagagaggatgctcacgatacgggttactgatgatgaccatgcccggttactggaacgttgtgagggtaaacaactggcggtatggatgcggcgggaccagagaaaaatcactcagggtcaatgccagcgcttcgttaatacagatgtaggtgttccacagggtagccagcagcatcctgcgatgcagatccggaacataatggtgcagggcgctgacttccgcgtttccagactttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactggttagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctgcaaaacgtctgcgacctgagcaacaacatgaatggtcttcggtttccgtgtttcgtaaagtctggaaacgcggaagtcagcgccctgcaccattatgttccggatctgcatcgcaggatgctgctggctaccctgtggaacacctacatctgtattaacgaagcgctggcattgaccctgagtgatttttctctggtcccgccgcatccataccgccagttgtttaccctcacaacgttccagtaaccgggcatggtcatcatcagtaacccgtatcgtgagcatcctctctcgnnnnnttaattaattaannnnnccgcgcgttggccgattcataaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaccaaagttagcttttgtcatttgacactcctcttgtttaatttgttttattttatcatttttacttttgaaaagaaagaattttgtaacgactgc Mask Tandem Repeat Region ================================================ gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnncgagagaggatgctcacgatacgggttactgatgatgaccatgcccggttactggaacgttgtgagggtaaacaactggcggtatggatgcggcgggaccagagaaaaatcactcagggtcaatgccagcgcttcgttaatacagatgtaggtgttccacagggtagccagcagcatcctgcgatgcagatccggaacataatggtgcagggcgctgacttccgcgtttccagactttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg Find is-nt database================================================ Query_seq: SMT_303:SMT_304|SMT_303:SMT_304:hypothetical protein:hypothetical protein:->->:245819..246719 901 gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnncgagagaggatgctcacgatacgggttactgatgatgaccatgcccggttactggaacgttgtgagggtaaacaactggcggtatggatgcggcgggaccagagaaaaatcactcagggtcaatgccagcgcttcgttaatacagatgtaggtgttccacagggtagccagcagcatcctgcgatgcagatccggaacataatggtgcagggcgctgacttccgcgtttccagactttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 151 Max: 895 Len: 745 Subject: GSAT|SAT HSP 1 e-value: 4.0E-7 bit: 56.0 Len: 32 Query Start:155 Query End:186 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 147 ..........................................................................................................................................................ggggatcctctagagtcgacctgcaggcatgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................ggggatcctctagagtcgacctgcagtcatgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 32 Query Start:860 Query End:891 Subject Strand: POSITIVE Subject Start: 116 Subject End: 147 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcatgcctgcaggtcgactctagaggatcccc.......... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcatgactgcaggtcgactctagaggatcccc.......... Subject: BBSINE1|SINE HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 26 Query Start:870 Query End:895 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 412 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aggtcgactctagaggatccccctgt...... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aggtcgactctagaggatccccctgt...... HSP 2 e-value: 6.0E-6 bit: 52.0 Len: 26 Query Start:151 Query End:176 Subject Strand: POSITIVE Subject Start: 387 Subject End: 412 ......................................................................................................................................................acagggggatcctctagagtcgacct..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................acagggggatcctctagagtcgacct..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find is-aa database================================================ Query_seq: SMT_303:SMT_304|SMT_303:SMT_304:hypothetical protein:hypothetical protein:->->:245819..246719 901 gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnncgagagaggatgctcacgatacgggttactgatgatgaccatgcccggttactggaacgttgtgagggtaaacaactggcggtatggatgcggcgggaccagagaaaaatcactcagggtcaatgccagcgcttcgttaatacagatgtaggtgttccacagggtagccagcagcatcctgcgatgcagatccggaacataatggtgcagggcgctgacttccgcgtttccagactttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_303:SMT_304|SMT_303:SMT_304:hypothetical protein:hypothetical protein:->->:245819..246719 901 gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnncgagagaggatgctcacgatacgggttactgatgatgaccatgcccggttactggaacgttgtgagggtaaacaactggcggtatggatgcggcgggaccagagaaaaatcactcagggtcaatgccagcgcttcgttaatacagatgtaggtgttccacagggtagccagcagcatcctgcgatgcagatccggaacataatggtgcagggcgctgacttccgcgtttccagactttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 20 Min: 242 Max: 853 Len: 612 Subject: UniRef90_P03852 Cluster: Hypothetical 15.3 kDa protein; n=6; Bacteria|Rep: Hypothetical 15.3 kDa protein - Escherichia coli HSP 1 e-value: 2.0E-51 bit: 205.0 Len: 342 Query Start:242 Query End:583 Subject Strand: null Subject Start: 19 Subject End: 132 ................................................................................................................................................................................................................................................. R E R M L T I R V T D D D H A R L L E R C E G K Q L A V W M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D F R V S R L Y E T R K P K T I H X X X X X X X X X X X X S L H V R S R I G D S F C .............................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................. R E R M L T I R V T D D E H A R L L E R C E G K Q L A V W M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D F R V S R L Y E T R K P K T I H V V A Q V A D V L Q Q Q S L H V R S R I G D S F C .............................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_P03850 Cluster: Hypothetical 10.0 kDa protein; n=1; Escherichia coli|Rep: Hypothetical 10.0 kDa protein - Escherichia coli HSP 1 e-value: 2.0E-44 bit: 182.0 Len: 261 Query Start:293 Query End:553 Subject Strand: null Subject Start: 1 Subject End: 87 .................................................................................................................................................................................................................................................................................................... V K R L L L Q N V C D L S N N M N G L R F P C F V K S G N A E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L T T F Q ............................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................................................... M K R L L L Q N V C D L S N N M N G L R F P C F V K S G N A E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L T T F Q ............................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_A0ZNE4 Cluster: Molybdenum cofactor biosynthesis protein C; n=2; Nodularia spumigena CCY9414|Rep: Molybdenum cofactor biosynthesis protein C - Nodularia spumigena CCY9414 HSP 1 e-value: 2.0E-26 bit: 112.0 Len: 159 Query Start:420 Query End:578 Subject Strand: null Subject Start: 1 Subject End: 53 ................................................................................................................................................................................................................................................................................................................................................................................................................................... M N H R Y A S E R E A T A A A K R L R P E Q Q H E W S S V S V F R K V W K R G S Q R P A P L C S G S A S Q ................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................... M N H R Y A S E R E A T A A A K R L R P E Q Q H E W S S V S V F R K V W K R G S Q R P A P L C S G S A S Q ................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-26 bit: 31.2 Len: 39 Query Start:383 Query End:421 Subject Strand: null Subject Start: 53 Subject End: 65 .............................................................................................................................................................................................................................................................................................................................................................................................. R M L L A T L W N T Y I C ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................. Q M L L A T L W N T Y I C ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q9F168 Cluster: Hypothetical protein; n=2; root|Rep: Hypothetical protein - IncN plasmid R46 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 46 Subject End: 98 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q2B3E4 Cluster: Hypothetical protein; n=1; Bacillus sp. NRRL B-14911|Rep: Hypothetical protein - Bacillus sp. NRRL B-14911 HSP 1 e-value: 2.0E-18 bit: 95.5 Len: 156 Query Start:305 Query End:460 Subject Strand: null Subject Start: 1 Subject End: 52 ................................................................................................................................................................................................................................................................................................................ E G K Q L A V W M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E G K Q L S V W M R R D Q R K I N Q G Q C Q R F V N T E V S L P Q G S L Q H P A M Q I R N I M R Q G G D ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q19NK4 Cluster: Hypothetical protein; n=1; Escherichia coli APEC O1|Rep: Hypothetical protein - Escherichia coli O1:K1 / APEC HSP 1 e-value: 2.0E-18 bit: 95.5 Len: 153 Query Start:329 Query End:481 Subject Strand: null Subject Start: 104 Subject End: 154 ........................................................................................................................................................................................................................................................................................................................................ M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D F R V S R L Y .................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................ I R R H Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D F R C Q Q I F .................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_UPI00005EEC00 Cluster: hypothetical protein EcolB7_01001251; n=1; Escherichia coli B7A|Rep: hypothetical protein EcolB7_01001251 - Escherichia coli B7A HSP 1 e-value: 2.0E-15 bit: 85.9 Len: 120 Query Start:459 Query End:578 Subject Strand: null Subject Start: 1 Subject End: 40 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N H R Y A S E R E A T A A A K R L R P E Q Q H E W S S V S V F R K V W K R G S ................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N H R Y A S E R E A T A A A K R L R P E Q Q H E W S S V S V F R K V W K R G S ................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q0QCC5 Cluster: ResA resolvase; n=2; Enterobacteriaceae|Rep: ResA resolvase - Klebsiella pneumoniae HSP 1 e-value: 5.0E-15 bit: 84.3 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 46 Subject End: 98 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L V P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q4L1W9 Cluster: Resolvase; n=4; Salmonella|Rep: Resolvase - Salmonella enterica HSP 1 e-value: 7.0E-15 bit: 84.0 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 48 Subject End: 100 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R R M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0VZ70 Cluster: Phage integrase; n=1; Enterobacter sp. 638|Rep: Phage integrase - Enterobacter sp. 638 HSP 1 e-value: 2.0E-14 bit: 82.8 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 47 Subject End: 99 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q6U5M2 Cluster: Resolvase; n=2; Enterobacteriaceae|Rep: Resolvase - Klebsiella pneumoniae HSP 1 e-value: 2.0E-14 bit: 82.8 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 47 Subject End: 99 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q6EME9 Cluster: Resolvase; n=1; Escherichia coli|Rep: Resolvase - Escherichia coli HSP 1 e-value: 2.0E-14 bit: 82.8 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 47 Subject End: 99 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_P06615 Cluster: Resolvase; n=14; root|Rep: Resolvase - Escherichia coli HSP 1 e-value: 2.0E-14 bit: 82.8 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 56 Subject End: 108 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q27TA6 Cluster: Resolvase; n=1; Escherichia coli APEC O1|Rep: Resolvase - Escherichia coli O1:K1 / APEC HSP 1 e-value: 2.0E-14 bit: 82.4 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 50 Subject End: 102 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E I S A L L H Y V P D L H R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q6JB09 Cluster: ResA; n=1; Escherichia coli|Rep: ResA - Escherichia coli HSP 1 e-value: 1.0E-13 bit: 79.7 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 47 Subject End: 99 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L R R K M L L A T L W N T G A R I N E A L A L T R G D F S L A P P Y P F V Q L A T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q2B3E3 Cluster: Hypothetical protein; n=1; Bacillus sp. NRRL B-14911|Rep: Hypothetical protein - Bacillus sp. NRRL B-14911 HSP 1 e-value: 5.0E-12 bit: 74.3 Len: 114 Query Start:305 Query End:418 Subject Strand: null Subject Start: 1 Subject End: 38 ................................................................................................................................................................................................................................................................................................................ M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ M L Q A T L W K T Y L C I N E A L A L T L V D F S L V P P H P Y R Q L F T L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q2VP07 Cluster: Putative resolvase; n=2; Escherichia coli|Rep: Putative resolvase - Escherichia coli HSP 1 e-value: 9.0E-12 bit: 73.6 Len: 159 Query Start:305 Query End:463 Subject Strand: null Subject Start: 16 Subject End: 68 ................................................................................................................................................................................................................................................................................................................ E V S A L H H Y V P D L H R R M L L A T L W N T Y I C I N E A L A L T L S D F S L V P P H P Y R Q L F T L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ E V S A L L H Y V P D L R R K M L L A T L W N T G A R I N E A L V L M R G D F S L T P P Y P F V Q L A P L ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q19NK3 Cluster: Hypothetical protein; n=2; root|Rep: Hypothetical protein - Escherichia coli O1:K1 / APEC HSP 1 e-value: 7.0E-10 bit: 67.4 Len: 105 Query Start:586 Query End:690 Subject Strand: null Subject Start: 78 Subject End: 112 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R R K E H S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R T R R I S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ................................................................................................................................................................................................................... Subject: UniRef90_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE - Myxococcus xanthus HSP 1 e-value: 2.0E-6 bit: 55.8 Len: 168 Query Start:686 Query End:853 Subject Strand: null Subject Start: 266 Subject End: 322 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. C I N E S A N A R G E A V C V L G A L P L P R S L T R C A R S F G C G E R Y Q L - T Q R R * Y G Y P Q N Q G I T Q ................................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. C I R D P A T A R S E A V W V L V A L P L L R S R T R C V R S V G C G G A V S A H S P G R P Y G D P Q P Q G M A Q ................................................ Subject: UniRef90_Q8VNN0 Cluster: Orf681 protein; n=1; Escherichia coli|Rep: Orf681 protein - Escherichia coli HSP 1 e-value: 1.0E-5 bit: 53.5 Len: 177 Query Start:305 Query End:481 Subject Strand: null Subject Start: 121 Subject End: 179 ................................................................................................................................................................................................................................................................................................................ E G K Q L A V W M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q I R N I M V Q G A D F R V S R L Y .................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................ Q G R K L H K R I R R R K R K I P P R Q R Q C F I N A C S G V P Q C G Q Q H L A V Q I R D V M E Q G T H F R S Q Q I F .................................................................................................................................................................................................................................................................................................................................................................................................................................... gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 121 End: 225 ........................................................................................................................ M F P D L G D H P S T G G S S R V D L Q A C K L C I Y E S A N A R X X .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 137 End: 229 ........................................................................................................................................ M T I L A Q G D P L E S T C R H A S S A F M N R P T R G X X N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 270 End: 389 ............................................................................................................................................................................................................................................................................. M M M T M P G Y W N V V R V N N W R Y G C G G T R E K S L R V N A S A S L I Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 251 End: 583 .......................................................................................................................................................................................................................................................... M L T I R V T D D D H A R L L E R C E G K Q L A V W M R R D Q R K I T Q G Q C Q R F V N T D V G V P Q G S Q Q H P A M Q .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: + Start: 456 End: 590 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T S A F P D F T K H G N R R P F M L L L R S Q T F C S S S R F T F A R V S V I H S A N Q ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 638 End: 781 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M M R T R G Q D P T L P E C S F L R Y P L I L W I T V L P P L S E L I P L A A A E R P S A A S Q ........................................................................................................................ Protein_Len: 50 Strand: - Start: 722 End: 871 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R R Q T L Q Y R E G C G F S R A C R T L S R P L P L A G L V C V A E G R A N A S E N I C L K C A Q M .............................. Protein_Len: 60 Strand: - Start: 642 End: 842 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L A A R I N K G A N D G S E T S L R I V A K S H A S V A R R L R V V S R L S D T L S S A S S R G I R L G G R G A R Q G M ........................................................... Protein_Len: 39 Strand: - Start: 578 End: 694 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. E A L W Y P L G A L R A P D E V V P A R D H A G T A L V W R Q G F T R E Q T M ............................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 381 End: 590 ............................................................................................................................................................................................................................................................................................................................................................................................ A A D Q S A S G S C L P A P R Q S G R K W V K R F V S V S S W E H Q Q E P R L R K A A A T A E R E S A Y R H N M R S V M ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 364 End: 474 ........................................................................................................................................................................................................................................................................................................................................................................... H W R K T L V S T P T G C P L W C C G A I C I R F M I T C P A S K R T E M ........................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 293 End: 574 .................................................................................................................................................................................................................................................................................................... N W L T A L L M R R H L D P V Y H H L A S V E A N G S K V F C P F R L G N M N N S L D C V N Q L L L R K V N A R T D T M ....................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 232 End: 354 ....................................................................................................................................................................................................................................... N X X R S L I S V I R T V S S S W A R N S S R Q S P L C S A T H I R R S W L F I M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 75 End: 197 .......................................................................... I V F A L K P R E L V S P D Y S N G S R P S W G L V P P D E L T S R C A H L S Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_303:SMT_304|SMT_303:SMT_304:hypothetical protein:hypothetical protein:->->:245819..246719 901 gcagtcgttacaaaattctttcttttcaaaagtaaaaatgataaaataaaacaaattaaacaagaggagtgtcaaatgacaaaagctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctagg Intra-Species Hit: Count: 21 Min: 85 Max: 236 Len: 152 Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 5.0E-29 bit: 131.0 Len: 66 Query Start:85 Query End:150 Subject Strand: POSITIVE Subject Start: 85 Subject End: 150 ....................................................................................gctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................gctaactttggtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-10 bit: 69.9 Len: 50 Query Start:187 Query End:236 Subject Strand: POSITIVE Subject Start: 187 Subject End: 236 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcggnnnnnttaattaattaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 827 Subject End: 859 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 4.0E-23 bit: 111.0 Len: 56 Query Start:95 Query End:150 Subject Strand: NEGATIVE Subject Start: 964 Subject End: 1019 ..............................................................................................gtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................gtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 895 Subject End: 927 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2029_SMT_2030|acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA|POSITIVE:NEGATIVE|[1944345,1944879]|535 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 55 Query Start:96 Query End:150 Subject Strand: NEGATIVE Subject Start: 449 Subject End: 503 ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 412 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 55 Query Start:96 Query End:150 Subject Strand: POSITIVE Subject Start: 42 Subject End: 96 ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 133 Subject End: 165 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 55 Query Start:96 Query End:150 Subject Strand: POSITIVE Subject Start: 452 Subject End: 506 ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 543 Subject End: 575 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 55 Query Start:96 Query End:150 Subject Strand: NEGATIVE Subject Start: 745 Subject End: 799 ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................tctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 676 Subject End: 708 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2000_SMT_2001|hypothetical protein:membrane protease protein family|NEGATIVE:POSITIVE|[1923199,1923526]|328 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 295 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 173 Subject End: 205 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1985_SMT_1986|hypothetical protein predicted by Glimmer/Critica:mercuric reductase|NEGATIVE:POSITIVE|[1914662,1914982]|321 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: POSITIVE Subject Start: 122 Subject End: 175 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 212 Subject End: 244 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 592 Subject End: 645 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 523 Subject End: 555 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 445 Subject End: 498 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 376 Subject End: 408 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: POSITIVE Subject Start: 14 Subject End: 67 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 104 Subject End: 136 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: POSITIVE Subject Start: 38 Subject End: 91 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 128 Subject End: 160 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: POSITIVE Subject Start: 53 Subject End: 106 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 143 Subject End: 175 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 678 Subject End: 731 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 609 Subject End: 641 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 1272 Subject End: 1325 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 1203 Subject End: 1235 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376 HSP 1 e-value: 7.0E-22 bit: 107.0 Len: 54 Query Start:97 Query End:150 Subject Strand: NEGATIVE Subject Start: 294 Subject End: 347 ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 225 Subject End: 257 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1967_SMT_1968|dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein:transcription-repair coupling factor|NEGATIVE:NEGATIVE|[1899774,1900040]|267 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:119 Query End:150 Subject Strand: POSITIVE Subject Start: 1 Subject End: 32 ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 69 Subject End: 101 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1955_SMT_1956|carbamoyl-phosphate synthase small chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1889499,1889626]|128 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:119 Query End:150 Subject Strand: POSITIVE Subject Start: 1 Subject End: 32 ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 69 Subject End: 101 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1690_SMT_1691|K06148 ATP-binding cassette, subfamily C, bacterial:putative deoxyribonuclease|NEGATIVE:POSITIVE|[1674870, 1675117]|248 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:119 Query End:150 Subject Strand: POSITIVE Subject Start: 1 Subject End: 32 ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 69 Subject End: 101 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_779_SMT_780|ribonuclease BN, putative:peptidase family U32|NEGATIVE:NEGATIVE|[688621,688841]|221 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:119 Query End:150 Subject Strand: POSITIVE Subject Start: 1 Subject End: 32 ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: POSITIVE Subject Start: 69 Subject End: 101 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_387_SMT_388|hypothetical protein predicted by Glimmer/Critica:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[321179,321311]|133 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:119 Query End:150 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 133 ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................agctgtttcctgatctaggtgaccatcctagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 33 Query Start:187 Query End:219 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 65 ..........................................................................................................................................................................................aagctctgcatttatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................aagctctgcattaatgaatcggccaacgcgcgg.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUAACUUUGGUCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUUAUGAAUCGGCCAACGCGCGGNNNNNUUAAUUAAUUAA ((...(.((((((..(((((....))))).((((((...(..((((..(((((.......)))))..))))..).................(((((((......)).))))).))))))...)))))).).))................... (-39.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAUUAAUUAANNNNNCCGCGCGUUGGCCGAUUCAUAAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGACCAAAGUUAGC .................(((((((((((............(((((.((......)))))))(((((..(((((..((((..((((...))))..))))..)))))...(....).....)))))))))))))).))................ (-41.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1117 110 61 231 182 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 1117 110 61 204 155 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 1117 110 61 73 24 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1117 110 61 222 173 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 1117 110 61 167 118 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 1117 110 61 167 118 smit:SMT_1961|5end_K07485_transposase_1894206..1894436_POSITIVE 1117 110 61 167 118 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 1117 110 61 211 162 smit:SMT_1954|5end_6-phospho-beta-glucosidase_1888548..1888778_POSITIVE 1117 110 61 202 153 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 1117 110 61 167 118 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 1117 110 61 216 167 smit:SMT_1155|5end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099665..1099895_NEGATIVE 1117 110 61 167 118 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 1117 110 61 88 39 smit:SMT_464|5end_ribonuclease_Z_402867..403097_POSITIVE 1117 110 61 167 118 smit:SMT_388|5end_branched-chain_amino_acid_transport_system_II_carrier_protein_321172..321402_POSITIVE 1072 98 51 231 184 smit:SMT_1686|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1670175..1670405_POSITIVE 1045 90 41 226 177 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 1016 70 21 206 157 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 846 55 13 188 146 smit:SMT_621|5end_K03346_replication_initiation_and_membrane_attachment_protein_528794..529024_POSITIVE 846 55 13 112 70 smit:SMT_620|5end_hypothetical_protein_predicted_by_Glimmer/Critica_528718..528948_POSITIVE 699 55 18 169 132 smit:SMT_2045|5end_K+_transport_system,_NAD-binding_component_1956139..1956369_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 976 130 81 58 9 smit:SMT_1956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1889537..1889687_NEGATIVE 976 130 81 53 4 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE 627 55 23 33 1 smit:SMT_619|3end_riboflavin_kinase_/_FMN_adenylyltransferase_528719..528869_POSITIVE 397 32 1 63 24 smit:SMT_1929|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1869690..1869840_NEGATIVE 383 58 12 80 31 smit:SMT_955|3end_acyltransferase_family_protein_904703..904853_POSITIVE 377 113 75 108 56 smit:SMT_1786|3end_phenylalanyl-tRNA_synthetase_beta_chain_1763235..1763385_NEGATIVE 367 58 13 49 1 smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE 364 110 61 137 83 smit:SMT_1693|3end_dimethyladenosine_transferase_1676752..1676902_POSITIVE 352 110 65 61 2 smit:SMT_1750|3end_anthranilate_phosphoribosyltransferase_1729095..1729245_POSITIVE 334 126 81 151 112 smit:SMT_313|3end_3R-hydroxymyristoyl_ACP_dehydrase_254345..254495_POSITIVE 325 109 65 60 6 smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE 317 100 51 60 10 smit:SMT_1293|3end_K02051_sulfonate/nitrate/taurine_transport_system_substrate-binding_protein_1256063..1256213_POSITIVE 315 62 25 89 56 smit:SMT_1453|3end_K07335_basic_membrane_protein_A_and_related_proteins_1436355..1436505_NEGATIVE 310 69 23 151 97 smit:SMT_842|3end_hypothetical_protein_788414..788564_NEGATIVE 305 67 22 75 13 smit:SMT_308|3end_trans-2-enoyl-ACP_reductase_II_250493..250643_POSITIVE 302 126 84 61 16 smit:SMT_1580|3end_MutT/NUDIX_family_protein_1573153..1573303_POSITIVE 299 93 51 66 23 smit:SMT_980|3end_hypothetical_protein_928227..928377_POSITIVE 295 59 20 148 98 smit:SMT_1898|3end_aminotransferase_(class_V),_putative_1848877..1849027_NEGATIVE 293 97 52 151 100 smit:SMT_2052|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1960662..1960812_NEGATIVE 290 79 34 151 92 smit:SMT_1200|3end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1161076..1161226_NEGATIVE