Origin IGS: agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acttcacctcctagtatagaaccttatcttaaatgattttccttagaaaagctaatctttagttgagtcacttttaaaactcaaccaatttggtttagttttattatataaaaaaagtagacaaatgtccactaggaaaagcagaaacatcgtgagttttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaatcaaactaaaaggacctagccctatacaatacagaactaaatcctttgaataaataattgatctaacttttaaaattcctacagaaattccagtttttct Mask Tandem Repeat Region ================================================ agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Find is-nt database================================================ Query_seq: SMT_259:SMT_260|SMT_259:SMT_260:dipeptide/tripeptide permease:phage transcriptional repressor:->->:199242..199609 368 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_259:SMT_260|SMT_259:SMT_260:dipeptide/tripeptide permease:phage transcriptional repressor:->->:199242..199609 368 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_259:SMT_260|SMT_259:SMT_260:dipeptide/tripeptide permease:phage transcriptional repressor:->->:199242..199609 368 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 13 End: 171 ............ M S V G I L K V R S I I Y S K D L V L Y C I G L G P F S L I N T L R K S N S N R V N V A L P Y S S T A C G ..................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 104 End: 262 ....................................................................................................... M L F E N Q I Q T A S T S P C R T Q V Q P A A S F L V C S L I F I E Y K T H D V S A F P S G H L S T F F I .......................................................................................................... Protein_Len: 38 Strand: + Start: 201 End: 314 ........................................................................................................................................................................................................ M S I K L T M F L L F L V D I C L L F L Y N K T K P N W L S F K S D S T K D ...................................................... agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 87 Start: 237 End: 266 ............................................................................................................................................................................................................................................GTGGACATTTGTCTACTTTTTTTATATAAT...................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 80 HP_score: -7.1 Tail_Score: -4.62054 Start: 57 End: 89 Full_Region: AATTATTTATTCAAA GGATTTAGTTCTGTA TTG TATAGGGCTAGGTCC TTTTAGTTTGATTAA ........................................................GGATTTAGTTCTGTATTGTATAGGGCTAGGTCC....................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 91 HP_score: -5.4 Tail_Score: -5.74122 Start: 237 End: 252 Full_Region: TTTCTGCTTTTCCTA GTGGAC ATTT GTCTAC TTTTTTTATATAATA ............................................................................................................................................................................................................................................GTGGACATTTGTCTAC.................................................................................................................... TransTerm Strand: - Conf: 85 HP_score: -10.5 Tail_Score: -3.48395 Start: 266 End: 294 Full_Region: tagttgagtcacttt taaaactcaacca att tggtttagtttta ttatataaaaaaagt .........................................................................................................................................................................................................................................................................taaaactcaaccaatttggtttagtttta.......................................................................... TransTerm Strand: - Conf: 78 HP_score: -6.0 Tail_Score: -4.84311 Start: 271 End: 289 Full_Region: gagtcacttttaaaa ctcaacca att tggtttag ttttattatataaaa ..............................................................................................................................................................................................................................................................................ctcaaccaatttggtttag............................................................................... Find igs database================================================ Query_seq: SMT_259:SMT_260|SMT_259:SMT_260:dipeptide/tripeptide permease:phage transcriptional repressor:->->:199242..199609 368 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Intra-Species Hit: Count: 37 Min: 1 Max: 368 Len: 368 Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 0.0 bit: 688.0 Len: 368 Query Start:1 Query End:368 Subject Strand: POSITIVE Subject Start: 1 Subject End: 368 agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctacnnnnnnnatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt agaaaaactggaatttctgtaggaattttaaaagttagatcaattatttattcaaaggatttagttctgtattgtatagggctaggtccttttagtttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaactcacgatgtttctgcttttcctagtggacatttgtctactttttttatataataaaactaaaccaaattggttgagttttaaaagtgactcaactaaagattagcttttctaaggaaaatcatttaagataaggttctatactaggaggtgaagt Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 110 Query Start:101 Query End:210 Subject Strand: POSITIVE Subject Start: 149 Subject End: 258 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 109 Query Start:102 Query End:210 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 181 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 113 Query Start:100 Query End:212 Subject Strand: POSITIVE Subject Start: 45 Subject End: 157 ...................................................................................................attaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ...................................................................................................attagtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 109 Query Start:102 Query End:210 Subject Strand: POSITIVE Subject Start: 50 Subject End: 158 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. .....................................................................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 105 Query Start:104 Query End:208 Subject Strand: POSITIVE Subject Start: 191 Subject End: 295 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 104 Query Start:105 Query End:208 Subject Strand: POSITIVE Subject Start: 19 Subject End: 122 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ........................................................................................................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 104 Query Start:105 Query End:208 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 109 Query Start:102 Query End:210 Subject Strand: POSITIVE Subject Start: 222 Subject End: 330 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 6.0E-45 bit: 182.0 Len: 110 Query Start:101 Query End:210 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 133 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataa.............................................................................................................................................................. Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 107 Query Start:105 Query End:211 Subject Strand: POSITIVE Subject Start: 1 Subject End: 107 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 110 Query Start:101 Query End:210 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 206 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 106 Query Start:105 Query End:210 Subject Strand: NEGATIVE Subject Start: 557 Subject End: 662 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 110 Query Start:101 Query End:210 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 128 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 108 Query Start:105 Query End:212 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 154 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 103 Query Start:102 Query End:204 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.................................................................................................................................................................... .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.................................................................................................................................................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 103 Query Start:102 Query End:204 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.................................................................................................................................................................... .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.................................................................................................................................................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 103 Query Start:102 Query End:204 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.................................................................................................................................................................... .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.................................................................................................................................................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:104 Query End:207 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................. Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 108 Query Start:103 Query End:210 Subject Strand: POSITIVE Subject Start: 104 Subject End: 211 ......................................................................................................aatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ......................................................................................................aatactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 111 Query Start:100 Query End:210 Subject Strand: POSITIVE Subject Start: 3 Subject End: 113 ...................................................................................................attaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ...................................................................................................attaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 107 Query Start:105 Query End:211 Subject Strand: POSITIVE Subject Start: 1 Subject End: 107 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 106 Query Start:105 Query End:210 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 209 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 106 Query Start:105 Query End:210 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 181 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 110 Query Start:102 Query End:211 Subject Strand: POSITIVE Subject Start: 34 Subject End: 143 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. .....................................................................................................taattctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataaa............................................................................................................................................................. Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 105 Query Start:104 Query End:208 Subject Strand: POSITIVE Subject Start: 176 Subject End: 280 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 110 Query Start:102 Query End:211 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 219 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 8.0E-32 bit: 139.0 Len: 106 Query Start:105 Query End:210 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 227 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 106 Query Start:105 Query End:210 Subject Strand: POSITIVE Subject Start: 1 Subject End: 105 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 105 Query Start:104 Query End:208 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 105 Query Start:104 Query End:208 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 360 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 49 Query Start:104 Query End:152 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 164 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-16 bit: 87.7 Len: 48 Query Start:161 Query End:208 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:168 Query End:212 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 199 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ HSP 2 e-value: 6.0E-11 bit: 69.9 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 356 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: smit_SMT_1569_SMT_1570|dihydroxy-acid dehydratase:hypothetical protein|POSITIVE:NEGATIVE|[1563129,1563339]|211 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:164 Query End:208 Subject Strand: POSITIVE Subject Start: 110 Subject End: 154 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ...................................................................................................................................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 5 Subject End: 52 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 186 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta........................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:164 Query End:208 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 77 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ...................................................................................................................................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtat................................................................................................................................................................ Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 45 Query Start:164 Query End:208 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ...................................................................................................................................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 33 Query Start:104 Query End:136 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 271 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtca........................................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtca........................................................................................................................................................................................................................................ Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 40 Query Start:168 Query End:207 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. .......................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................. HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:105 Query End:152 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ........................................................................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta........................................................................................................................................................................................................................ Inter-species Hit: Count: 53 Min: 96 Max: 214 Len: 119 Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 111 Query Start:102 Query End:212 Subject Strand: POSITIVE Subject Start: 5 Subject End: 115 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 111 Query Start:102 Query End:212 Subject Strand: POSITIVE Subject Start: 5 Subject End: 115 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 110 Query Start:102 Query End:211 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 193 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 110 Query Start:102 Query End:211 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 160 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 110 Query Start:102 Query End:211 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 199 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. .....................................................................................................taatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 111 Query Start:104 Query End:214 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 114 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaact.......................................................................................................................................................... .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattaaact.......................................................................................................................................................... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 106 Query Start:105 Query End:210 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 111 Query Start:104 Query End:214 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 113 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaact.......................................................................................................................................................... .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattaaact.......................................................................................................................................................... Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 9.0E-41 bit: 168.0 Len: 105 Query Start:104 Query End:208 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 293 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 108 Query Start:102 Query End:209 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 222 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata............................................................................................................................................................... .....................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata............................................................................................................................................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 107 Query Start:105 Query End:211 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. ........................................................................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 8.0E-38 bit: 159.0 Len: 104 Query Start:104 Query End:207 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 172 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. .......................................................................................................atactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................. Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 8.0E-35 bit: 149.0 Len: 107 Query Start:105 Query End:211 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. ........................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 8.0E-35 bit: 149.0 Len: 107 Query Start:105 Query End:211 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 164 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. ........................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataaa............................................................................................................................................................. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 110 Query Start:99 Query End:208 Subject Strand: POSITIVE Subject Start: 140 Subject End: 249 ..................................................................................................gattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ..................................................................................................gattgatactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................................................................................................................................................ Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 110 Query Start:99 Query End:208 Subject Strand: POSITIVE Subject Start: 140 Subject End: 249 ..................................................................................................gattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ..................................................................................................gattgatactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................................................................................................................................................ Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 8.0E-32 bit: 139.0 Len: 110 Query Start:99 Query End:208 Subject Strand: POSITIVE Subject Start: 140 Subject End: 249 ..................................................................................................gattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ..................................................................................................gattgatactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................................................................................................................................................ Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 104 Query Start:104 Query End:207 Subject Strand: POSITIVE Subject Start: 47 Subject End: 149 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta................................................................................................................................................................. Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 117 Query Start:96 Query End:212 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 321 ...............................................................................................tttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ...............................................................................................tttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 117 Query Start:96 Query End:212 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 321 ...............................................................................................tttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ...............................................................................................tttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 117 Query Start:96 Query End:212 Subject Strand: NEGATIVE Subject Start: 216 Subject End: 331 ...............................................................................................tttgattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ...............................................................................................tttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgctttaccgtactcaagtacagcctgcggctcgcttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 105 Query Start:104 Query End:208 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................................................................................................................................................ Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 105 Query Start:104 Query End:208 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat................................................................................................................................................................ Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 52 Query Start:101 Query End:152 Subject Strand: POSITIVE Subject Start: 51 Subject End: 102 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:161 Query End:210 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 52 Query Start:101 Query End:152 Subject Strand: POSITIVE Subject Start: 51 Subject End: 102 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-15 bit: 83.8 Len: 50 Query Start:161 Query End:210 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtataa.............................................................................................................................................................. Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 48 Query Start:161 Query End:208 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 6.0E-17 bit: 89.7 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 1860 Subject End: 1908 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 48 Query Start:161 Query End:208 Subject Strand: POSITIVE Subject Start: 249 Subject End: 296 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 101 Subject End: 148 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 48 Query Start:161 Query End:208 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 86 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:105 Query End:152 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 187 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ........................................................................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 52 Query Start:101 Query End:152 Subject Strand: POSITIVE Subject Start: 542 Subject End: 593 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-16 bit: 87.7 Len: 48 Query Start:161 Query End:208 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ Subject: NC_008533_SPD_0652_SPD_0653|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[671147,671413]|267 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:164 Query End:210 Subject Strand: POSITIVE Subject Start: 163 Subject End: 209 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 47 Query Start:101 Query End:147 Subject Strand: POSITIVE Subject Start: 55 Subject End: 100 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttg............................................................................................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg............................................................................................................................................................................................................................. Subject: NC_003098_spr0659_spr0660|ABC transporter substrate-binding protein - branched chain amino acid transport:ABC transporter membrane-spanning permease - branched chain amino acid transport|POSITIVE:POSITIVE|[663616,663873]|258 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:164 Query End:210 Subject Strand: POSITIVE Subject Start: 163 Subject End: 209 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 47 Query Start:101 Query End:147 Subject Strand: POSITIVE Subject Start: 55 Subject End: 100 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttg............................................................................................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg............................................................................................................................................................................................................................. Subject: NC_003028_SP_0749_SP_0750|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[709061,709327]|267 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:164 Query End:210 Subject Strand: POSITIVE Subject Start: 163 Subject End: 209 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 47 Query Start:101 Query End:147 Subject Strand: POSITIVE Subject Start: 55 Subject End: 100 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttg............................................................................................................................................................................................................................. ....................................................................................................ttaatactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg............................................................................................................................................................................................................................. Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 44 Query Start:164 Query End:207 Subject Strand: POSITIVE Subject Start: 961 Subject End: 1004 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 48 Query Start:104 Query End:151 Subject Strand: POSITIVE Subject Start: 810 Subject End: 856 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... Subject: NC_003098_spr0792_spr0793|Type 1 restriction modification system endonuclease R:Arginine repressor|POSITIVE:NEGATIVE|[792302,792886]|585 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 48 Query Start:161 Query End:208 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 311 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcctgcagctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 54 Query Start:99 Query End:152 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 464 ..................................................................................................gattaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ..................................................................................................gatttatactcttcgaaaatctc-ttcaatccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 44 Query Start:164 Query End:207 Subject Strand: POSITIVE Subject Start: 463 Subject End: 506 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 48 Query Start:104 Query End:151 Subject Strand: POSITIVE Subject Start: 312 Subject End: 358 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 52 Query Start:161 Query End:212 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ................................................................................................................................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtataaaa............................................................................................................................................................ HSP 2 e-value: 6.0E-11 bit: 69.9 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:165 Query End:207 Subject Strand: POSITIVE Subject Start: 464 Subject End: 506 ....................................................................................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ....................................................................................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 48 Query Start:104 Query End:151 Subject Strand: POSITIVE Subject Start: 312 Subject End: 358 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:164 Query End:210 Subject Strand: POSITIVE Subject Start: 491 Subject End: 537 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttggttttcattgagtataa.............................................................................................................................................................. HSP 2 e-value: 6.0E-8 bit: 60.0 Len: 50 Query Start:102 Query End:151 Subject Strand: POSITIVE Subject Start: 338 Subject End: 386 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... .....................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt......................................................................................................................................................................................................................... Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 42 Query Start:169 Query End:210 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 73 ........................................................................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. ........................................................................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtataa.............................................................................................................................................................. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 48 Query Start:105 Query End:152 Subject Strand: NEGATIVE Subject Start: 272 Subject End: 318 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ ........................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 52 Query Start:161 Query End:212 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ................................................................................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataaaa............................................................................................................................................................ HSP 2 e-value: 6.0E-11 bit: 69.9 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 48 Query Start:161 Query End:208 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 67 Subject End: 114 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 52 Query Start:161 Query End:212 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 176 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataaaa............................................................................................................................................................ ................................................................................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataaaa............................................................................................................................................................ HSP 2 e-value: 6.0E-11 bit: 69.9 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 48 Query Start:161 Query End:208 Subject Strand: POSITIVE Subject Start: 306 Subject End: 353 ................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ ................................................................................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 67 Subject End: 114 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 39 Query Start:170 Query End:208 Subject Strand: POSITIVE Subject Start: 357 Subject End: 395 .........................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .........................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 67 Subject End: 114 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 46 Query Start:104 Query End:149 Subject Strand: POSITIVE Subject Start: 105 Subject End: 150 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgcc........................................................................................................................................................................................................................... .......................................................................................................atactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc........................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 41 Query Start:167 Query End:207 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ......................................................................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ......................................................................................................................................................................gcggctagttacctagtttgttctttgattttcattgagta................................................................................................................................................................. Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 46 Query Start:104 Query End:149 Subject Strand: POSITIVE Subject Start: 105 Subject End: 150 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgcc........................................................................................................................................................................................................................... .......................................................................................................atactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc........................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 41 Query Start:167 Query End:207 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ......................................................................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ......................................................................................................................................................................gcggctagttacctagtttgttctttgattttcattgagta................................................................................................................................................................. Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata............................................................................................................................................................... ........................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata............................................................................................................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:168 Query End:208 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................................................................................ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 53 Query Start:101 Query End:153 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 354 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... ....................................................................................................ttaatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 105 Query Start:105 Query End:209 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 272 ........................................................................................................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata............................................................................................................................................................... ........................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata............................................................................................................................................................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:168 Query End:208 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................................................................................ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 53 Query Start:101 Query End:153 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 354 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... ....................................................................................................ttaatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:168 Query End:208 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 146 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................................................................................................................................................ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 53 Query Start:101 Query End:153 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 259 ....................................................................................................ttaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... ....................................................................................................ttaatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac....................................................................................................................................................................................................................... Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:168 Query End:208 Subject Strand: POSITIVE Subject Start: 248 Subject End: 288 .......................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ .......................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat................................................................................................................................................................ HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 49 Query Start:104 Query End:152 Subject Strand: POSITIVE Subject Start: 138 Subject End: 185 .......................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .......................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ Subject: NC_003028_SP_2153_SP_2156|hypothetical protein:SPFH domain/Band 7 family|POSITIVE:NEGATIVE|[2068633,2069965]|1333 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 44 Query Start:164 Query End:207 Subject Strand: NEGATIVE Subject Start: 1133 Subject End: 1176 ...................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta................................................................................................................................................................. ...................................................................................................................................................................cctgtggctagtttcctaatttgctctttgattttcattgagta................................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 51 Query Start:102 Query End:152 Subject Strand: NEGATIVE Subject Start: 1279 Subject End: 1328 .....................................................................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................................................................................................................................................ .....................................................................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta........................................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGAUUAAUACUCUUCGAAAAUCAAAUUCAAACCGCGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAAACU ........((((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...))))))...... (-33.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUUUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGCGGUUUGAAUUUGAUUUUCGAAGAGUAUUAAUCAAA .(....((((((..(((((((((((...((((((.(..(((..(((....(((((((....)))))))..)))...)))..)..))))))..)))))))))))..))))))....)... (-44.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1060 80 31 211 162 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 977 100 51 214 165 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 965 79 31 175 127 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 965 79 31 175 127 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 965 79 31 175 127 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 952 70 21 231 182 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 818 110 62 95 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 769 57 11 199 154 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 762 110 62 95 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 761 110 62 95 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 683 110 62 95 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 682 110 62 95 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 616 110 62 198 152 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 586 57 26 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 523 44 1 231 190 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 499 50 9 215 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 495 48 1 166 115 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 491 41 8 228 195 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 393 41 9 196 165 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 392 76 35 231 191 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 965 79 31 60 12 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 965 79 31 60 12 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 965 79 31 60 12 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 901 110 61 52 3 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 887 79 31 57 9 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 871 100 51 57 8 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 821 110 62 74 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 820 110 61 50 1 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 818 110 62 88 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 790 110 62 54 8 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 761 110 62 55 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 755 110 62 84 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 743 110 62 88 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 740 110 61 88 39 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 715 110 62 88 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 624 110 73 38 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 612 110 68 43 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 612 57 11 82 37 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 612 57 11 147 102 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 495 48 1 70 19 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE