Origin IGS: gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataagacagtatttatgaattcttgataagaggagtttgagtagaaatcttgctttacctagatagcttattcccagcagtttaagaagaaaggaaaaattaacaac Mask Tandem Repeat Region ================================================ gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Find is-nt database================================================ Query_seq: SMT_2108:SMT_2109|SMT_2108:SMT_2109:adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica:<-<-:1998942..1999150 209 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2108:SMT_2109|SMT_2108:SMT_2109:adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica:<-<-:1998942..1999150 209 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2108:SMT_2109|SMT_2108:SMT_2109:adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica:<-<-:1998942..1999150 209 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 28 End: 132 ........................... M L G I S Y L G K A R F L L K L L L S R I H K Y C L I L N E N Q R A N ............................................................................. Protein_Len: 36 Strand: - Start: 85 End: 192 .................................................................................... S N M F V T K Y E I F I L S C V L F S A V P Q V Q T R C P S A S T T Q M ................. gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_2108:SMT_2109|SMT_2108:SMT_2109:adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica:<-<-:1998942..1999150 209 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Intra-Species Hit: Count: 38 Min: 1 Max: 209 Len: 209 Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 1.0E-115 bit: 414.0 Len: 209 Query Start:1 Query End:209 Subject Strand: POSITIVE Subject Start: 1 Subject End: 209 gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta gttgttaatttttcctttcttcttaaactgctgggaataagctatctaggtaaagcaagatttctactcaaactcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-71 bit: 270.0 Len: 136 Query Start:74 Query End:209 Subject Strand: POSITIVE Subject Start: 46 Subject End: 181 .........................................................................tcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................tcctcttatcaagaattcataaatactgtcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 8.0E-49 bit: 194.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 97 Subject End: 202 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 108 Query Start:102 Query End:209 Subject Strand: POSITIVE Subject Start: 555 Subject End: 662 .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 1.0E-44 bit: 180.0 Len: 107 Query Start:103 Query End:209 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 212 ......................................................................................................cttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ......................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 1.0E-44 bit: 180.0 Len: 107 Query Start:103 Query End:209 Subject Strand: NEGATIVE Subject Start: 225 Subject End: 331 ......................................................................................................cttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ......................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 5.0E-44 bit: 178.0 Len: 108 Query Start:102 Query End:209 Subject Strand: POSITIVE Subject Start: 22 Subject End: 129 .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .....................................................................................................tcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 5.0E-44 bit: 178.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 8.0E-43 bit: 174.0 Len: 108 Query Start:102 Query End:209 Subject Strand: POSITIVE Subject Start: 17 Subject End: 124 .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 153 Subject End: 258 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 73 Subject End: 178 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 155 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:110 Query End:209 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 114 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 280 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagta Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 295 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:110 Query End:209 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 114 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:104 Query End:207 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 142 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagag.. .......................................................................................................ttatgctcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagag.. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 100 Query Start:110 Query End:209 Subject Strand: POSITIVE Subject Start: 1 Subject End: 100 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:107 Query End:209 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 210 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:104 Query End:207 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 158 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagag.. .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagag.. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:103 Query End:209 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 114 ......................................................................................................cttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ......................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 107 Query Start:103 Query End:209 Subject Strand: POSITIVE Subject Start: 122 Subject End: 227 ......................................................................................................cttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ......................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 112 Subject End: 216 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 45 Subject End: 147 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 122 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 50 Subject End: 154 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 107 Query Start:103 Query End:209 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ......................................................................................................cttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ......................................................................................................cttatactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 257 Subject End: 359 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 4.0E-23 bit: 109.0 Len: 103 Query Start:107 Query End:209 Subject Strand: POSITIVE Subject Start: 1 Subject End: 102 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ..........................................................................................................tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagta Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta HSP 2 e-value: 3.0E-11 bit: 69.9 Len: 39 Query Start:107 Query End:145 Subject Strand: POSITIVE Subject Start: 152 Subject End: 190 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagcc................................................................ ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagcc................................................................ Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 136 Subject End: 183 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta HSP 2 e-value: 8.0E-6 bit: 52.0 Len: 34 Query Start:101 Query End:134 Subject Strand: POSITIVE Subject Start: 28 Subject End: 61 ....................................................................................................gtcttatactcaatgaaaatcaaagagcaaacta........................................................................... ....................................................................................................gtctcatactcaatgaaaatcaaaaagcaaacta........................................................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 14 Subject End: 61 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................ HSP 2 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 116 Subject End: 163 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 35 Query Start:175 Query End:209 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ..............................................................................................................................................................................agctgacgtggtttgaatttgattttcgaagagta ..............................................................................................................................................................................agctgacgtggtttgaatttgattttcgaagagta HSP 2 e-value: 5.0E-10 bit: 65.9 Len: 45 Query Start:106 Query End:150 Subject Strand: POSITIVE Subject Start: 158 Subject End: 202 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .........................................................................................................atactcaatgaaaatcaaagaccaaactaggaagctagccgcagg........................................................... Subject: smit_SMT_1871_SMT_1872|modification methylase, HemK family:K03217 preprotein translocase YidC subunit|NEGATIVE:NEGATIVE|[1830592,1830972]|381 HSP 1 e-value: 1.0E-10 bit: 67.9 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 144 Subject End: 191 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atmctcaatgaaaatcaaagagcaaactaggaagctagtcgcaggctg........................................................ HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 291 Subject End: 337 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagta Subject: smit_SMT_1623_SMT_1624|K03498 trk system potassium uptake protein TrkH:formate acetyltransferase|POSITIVE:NEGATIVE|[1611176, 1611510]|335 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:110 Query End:150 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 192 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 8.0E-6 bit: 52.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 94 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacgtggt---atttttattttcgaagagta Inter-species Hit: Count: 43 Min: 102 Max: 209 Len: 108 Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 8.0E-49 bit: 194.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 115 Subject End: 219 ........................................................................................................tatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ........................................................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 103 Query Start:107 Query End:209 Subject Strand: POSITIVE Subject Start: 69 Subject End: 171 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagta Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 189 Subject End: 292 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 10 Subject End: 113 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 85 Subject End: 190 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 113 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagta Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 52 Subject End: 157 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 113 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagta Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 91 Subject End: 196 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:104 Query End:209 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 249 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagta Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 249 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagta Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 7.0E-31 bit: 135.0 Len: 104 Query Start:106 Query End:209 Subject Strand: POSITIVE Subject Start: 10 Subject End: 112 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 7.0E-31 bit: 135.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 249 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagta Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 103 Query Start:107 Query End:209 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 149 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 9.0E-24 bit: 111.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 238 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagta Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 9.0E-24 bit: 111.0 Len: 104 Query Start:106 Query End:209 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 238 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .........................................................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagta Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ........................................................................................................tatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ........................................................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 105 Query Start:105 Query End:209 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ........................................................................................................tatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta ........................................................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 52 Query Start:102 Query End:153 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 210 .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................ HSP 2 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 102 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 1861 Subject End: 1908 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta HSP 2 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2010 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg........................................................ Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 52 Query Start:102 Query End:153 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 210 .....................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .....................................................................................................tcttatactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................ HSP 2 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 102 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 3.0E-14 bit: 79.8 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 546 Subject End: 593 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 40 Query Start:106 Query End:145 Subject Strand: NEGATIVE Subject Start: 656 Subject End: 695 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagcc................................................................ .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagcc................................................................ Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 5.0E-13 bit: 75.8 Len: 42 Query Start:104 Query End:145 Subject Strand: POSITIVE Subject Start: 114 Subject End: 155 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagcc................................................................ .......................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagcc................................................................ HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 264 Subject End: 310 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_008533_SPD_1201_SPD_1202|phosphotransferase LicD3:Psr protein|NEGATIVE:NEGATIVE|[1231002,1231279]|278 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 274 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagtgcaaactaggaagctagccgcaggctg........................................................ HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 124 Subject End: 170 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003098_spr1709_spr1710|Dextransucrase (sucrose 6-glucosyltransferase):ABC transporter membrane spanning permease - multiple sugars|NEGATIVE:NEGATIVE|[1682434,1682790]|357 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 44 Query Start:107 Query End:150 Subject Strand: NEGATIVE Subject Start: 314 Subject End: 357 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 255 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003098_spr1225_spr1226|LicD1 paralog:hypothetical protein|NEGATIVE:NEGATIVE|[1223471,1223748]|278 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 274 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagtgcaaactaggaagctagccgcaggctg........................................................ HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 124 Subject End: 170 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_1894_SP_1895|sucrose phosphorylase:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1801040,1801396]|357 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 44 Query Start:107 Query End:150 Subject Strand: NEGATIVE Subject Start: 314 Subject End: 357 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 255 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_1367_SP_1368|licD3 protein:psr protein|NEGATIVE:NEGATIVE|[1290910,1291187]|278 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:106 Query End:153 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 274 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagtgcaaactaggaagctagccgcaggctg........................................................ HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: NEGATIVE Subject Start: 124 Subject End: 170 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 44 Query Start:107 Query End:150 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 ..........................................................................................................tactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... ..........................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 148 Subject End: 194 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_0095_SP_0096|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[97857,98130]|274 HSP 1 e-value: 8.0E-12 bit: 71.9 Len: 48 Query Start:106 Query End:153 Subject Strand: POSITIVE Subject Start: 53 Subject End: 100 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacaggctg........................................................ .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagctgcaggctg........................................................ HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 157 Subject End: 203 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggcgaagctgacgcggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_2112_SP_2113|maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[2026318,2026608]|291 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 47 Query Start:104 Query End:150 Subject Strand: POSITIVE Subject Start: 133 Subject End: 179 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .......................................................................................................ttatactcaatgaaaatcaaagtgcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 238 Subject End: 284 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_008533_SPD_1384_SPD_1385|cation efflux family protein:ABC transporter, ATP-binding protein|POSITIVE:NEGATIVE|[1405462,1405603]|142 HSP 1 e-value: 1.0E-10 bit: 67.9 Len: 101 Query Start:104 Query End:204 Subject Strand: POSITIVE Subject Start: 37 Subject End: 137 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttg-aatttgattttcgaa..... .......................................................................................................ttatactcaataaaaatcaaagtgcaaattaggaagccggtcacaggctgtacttgagt-cggcaatgtgaagccgacatagtttgcactttgattttcgaa..... Subject: NC_003098_spr1411_spr1412|hypothetical protein:ABC transporter ATP-binding protein - unknown substrate|POSITIVE:NEGATIVE|[1397931,1398072]|142 HSP 1 e-value: 1.0E-10 bit: 67.9 Len: 101 Query Start:104 Query End:204 Subject Strand: POSITIVE Subject Start: 37 Subject End: 137 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttg-aatttgattttcgaa..... .......................................................................................................ttatactcaataaaaatcaaagtgcaaattaggaagccggtcacaggctgtacttgagt-cggcaatgtgaagccgacatagtttgcactttgattttcgaa..... Subject: NC_003028_SP_1552_SP_1553|cation efflux family protein:ABC transporter, ATP-binding protein|POSITIVE:NEGATIVE|[1462490,1462631]|142 HSP 1 e-value: 1.0E-10 bit: 67.9 Len: 101 Query Start:104 Query End:204 Subject Strand: POSITIVE Subject Start: 37 Subject End: 137 .......................................................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttg-aatttgattttcgaa..... .......................................................................................................ttatactcaataaaaatcaaagtgcaaattaggaagccggtcacaggctgtacttgagt-cggcaatgtgaagccgacatagtttgcactttgattttcgaa..... Subject: NC_008533_SPD_1568_SPD_1569|GTP cyclohydrolase, putative:aquaporin|POSITIVE:NEGATIVE|[1586901, 1587379]|479 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 45 Query Start:106 Query End:150 Subject Strand: POSITIVE Subject Start: 5 Subject End: 49 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagttagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 378 Subject End: 424 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_008533_SPD_0781_SPD_0782|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[793779,794285]|507 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:110 Query End:150 Subject Strand: POSITIVE Subject Start: 257 Subject End: 297 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 357 Subject End: 403 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003098_spr1603_spr1604|hypothetical protein:Aquaporin Z - water channel protein|POSITIVE:NEGATIVE|[1579370,1579848]|479 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 45 Query Start:106 Query End:150 Subject Strand: POSITIVE Subject Start: 5 Subject End: 49 .........................................................................................................atactcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .........................................................................................................atactcaatgaaaatcaaagagcaaactaggaagttagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 378 Subject End: 424 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003098_spr0789_spr0790|hypothetical protein:Type I restriction modification enzyme methylase subunit|POSITIVE:POSITIVE|[786248,786754]|507 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:110 Query End:150 Subject Strand: POSITIVE Subject Start: 257 Subject End: 297 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 357 Subject End: 403 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Subject: NC_003028_SP_0885_SP_0886|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[834569,835074]|506 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:110 Query End:150 Subject Strand: POSITIVE Subject Start: 257 Subject End: 297 .............................................................................................................tcaatgaaaatcaaagagcaaactagaaagctagccacagg........................................................... .............................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcagg........................................................... HSP 2 e-value: 5.0E-7 bit: 56.0 Len: 48 Query Start:162 Query End:209 Subject Strand: POSITIVE Subject Start: 356 Subject End: 402 .................................................................................................................................................................tacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta .................................................................................................................................................................tacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGAAAGCUAGCCACAGGCUGUACUUGAGUACGGCAAGGCGAAGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUA .....(((((..(((((((((((...((((((((..((((.(((....(((((((....)))))))..)))..))))..).)))))))..)))))))))))..))))) (-44.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCUUCGCCUUGCCGUACUCAAGUACAGCCUGUGGCUAGCUUUCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAGA (((((...((((((((((..(((((...(..((((..(((..((.((((....)))).))....))).))))..)..)))))...))))))))))...)))))..... (-33.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 934 80 31 227 178 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 903 67 21 231 185 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 855 90 41 203 154 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 855 90 41 228 179 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 854 90 41 202 153 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 854 90 41 189 140 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 851 90 41 212 163 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 843 90 41 200 151 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 836 70 21 195 146 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 836 70 21 231 182 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 726 50 1 150 100 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 657 49 1 216 163 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 646 50 1 160 111 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 618 50 3 231 184 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 576 39 1 231 193 smit:SMT_2108|5end_adenylosuccinate_lyase_1998851..1999081_NEGATIVE 575 49 1 168 120 smit:SMT_1544|5end_mevalonate_kinase_1528884..1529114_NEGATIVE 565 90 41 227 187 smit:SMT_775|5end_alpha-acetolactate_decarboxylase_685972..686202_NEGATIVE 558 49 5 191 148 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 520 49 5 156 112 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 517 90 41 224 175 smit:SMT_457|5end_hypothetical_protein_396166..396396_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1041 80 31 62 13 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 985 90 41 72 23 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 963 90 41 73 24 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 907 90 41 72 23 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 904 90 41 70 21 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 881 90 41 68 19 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 855 90 41 73 24 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 855 90 41 72 23 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 854 90 41 68 19 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 843 90 41 72 19 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 825 90 41 73 24 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 806 90 42 49 1 smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE 795 90 41 54 5 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 765 100 51 75 26 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 759 100 55 46 1 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 694 100 61 82 43 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 614 100 62 38 1 smit:SMT_1872|3end_K03217_preprotein_translocase_YidC_subunit_1830883..1831033_NEGATIVE 558 49 5 109 66 smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE 519 100 59 76 37 smit:SMT_124|3end_hypothetical_protein_75590..75740_NEGATIVE 517 90 41 69 20 smit:SMT_456|3end_pyruvate_oxidase_396091..396241_POSITIVE