Origin IGS: ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttatcacctcctttcaatatatagtatcatgcaaacgctttttaagcaactatttctcaatcatttttgtccagattctttttcctatcatgaataaaatcactccaattatcttttgaaaatacttcaattttcatgtgtagacatctacataaaacaggaaaaaccttggaatcaaggctttttcgtatcttctacaaaaaaagcaagagatctagagggctatgaatctagatgtacattttgcttaaatgattgaatgtcttttcttaacaaaaacaccccaaaaattagattttttctgtctaacttttgaggtacagttcaaacgcgaaatagcgtttttttgttatttttggttactcatctaatcgaataaacatcatggcatttaacaaagatatgagtgataccttgkttatattatttgatatatcagtctcttatttctcatcggaggraatataaaattagaatgatgatatcataaggcgannnnnttaa Mask Tandem Repeat Region ================================================ ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Find is-nt database================================================ Query_seq: SMT_2099:SMT_2100|SMT_2099:SMT_2100:putative zinc-binding dehydrogenase:ribose operon repressor:->->:1992324..1992828 505 ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2099:SMT_2100|SMT_2099:SMT_2100:putative zinc-binding dehydrogenase:ribose operon repressor:->->:1992324..1992828 505 ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2099:SMT_2100|SMT_2099:SMT_2100:putative zinc-binding dehydrogenase:ribose operon repressor:->->:1992324..1992828 505 ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 314 End: 445 ......................................................................................................................................................................................................................................................................................................................... M R K S L D S K V F P V L C R C L H M K I E V F S K D N W S D F I H D R K K N L D K N D ............................................................ Protein_Len: 38 Strand: - Start: 389 End: 502 .................................................................................................................................................................................................................................................................................................................................................................................................... F I I P T I K N M I P F L I Q V F I I S F Y N S L F R K C S V I Y Q F S T M ... Protein_Len: 44 Strand: - Start: 280 End: 411 ....................................................................................................................................................................................................................................................................................... L G R S R K S K K Y F I R F L R S E L T K G T K H L H R C M F I S T N E F S L Q L S K M .............................................................................................. Protein_Len: 47 Strand: - Start: 249 End: 389 ........................................................................................................................................................................................................................................................ D N L C F T C R S E Y G E L D R A K K T S S V F F G Q N W P K E Q K I Y I D V C S F Q L I K M .................................................................................................................... Protein_Len: 39 Strand: - Start: 137 End: 253 ........................................................................................................................................ I L L W F Y C F F A I E R K F Q V E F T L C F F D L K Q P T K T L F L C E I M ............................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 40 End: 153 ....................................... I X E S S F Y S V S I D F L I X L T D S M D K N F A M I N I R N S S Y G F M ................................................................................................................................................................................................................................................................................................................................................................ ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 81 HP_score: -6.4 Tail_Score: -5.06414 Start: 185 End: 225 Full_Region: TTCGCGTTTGAACTG TACCTCAAAAGTTAGA CAGAAAAAA TCTAATTTTTGGGGTG TTTTTGTTAAGAAAA ........................................................................................................................................................................................TACCTCAAAAGTTAGACAGAAAAAATCTAATTTTTGGGGTG........................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 72 HP_score: -6.8 Tail_Score: -4.16307 Start: 187 End: 223 Full_Region: CGCGTTTGAACTGTA CCTCAAAAGTTAGA CAGAAAAAA TCTAATTTTTGGGG TGTTTTTGTTAAGAA ..........................................................................................................................................................................................CCTCAAAAGTTAGACAGAAAAAATCTAATTTTTGGGG.......................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 76 HP_score: -7.8 Tail_Score: -3.88698 Start: 318 End: 345 Full_Region: TTTTGTAGAAGATAC GAAAAAGCCTTG ATTC CAAGGTTTTTCC TGTTTTATGTAGATG .............................................................................................................................................................................................................................................................................................................................GAAAAAGCCTTGATTCCAAGGTTTTTCC................................................................................................................................................................ TransTerm Strand: + Conf: 82 HP_score: -6.7 Tail_Score: -4.99972 Start: 325 End: 338 Full_Region: GAAGATACGAAAAAG CCTTG ATTC CAAGG TTTTTCCTGTTTTAT ....................................................................................................................................................................................................................................................................................................................................CCTTGATTCCAAGG....................................................................................................................................................................... TransTerm Strand: - Conf: 46 HP_score: -3.7 Tail_Score: -2.89191 Start: 369 End: 388 Full_Region: actccaattatcttt tgaaaat acttca attttca tgtgtagacatctac ................................................................................................................................................................................................................................................................................................................................................................................tgaaaatacttcaattttca..................................................................................................................... TransTerm Strand: - Conf: 58 HP_score: -2.9 Tail_Score: -4.39166 Start: 375 End: 389 Full_Region: cactccaattatctt ttgaa aatac ttcaa ttttcatgtgtagac ......................................................................................................................................................................................................................................................................................................................................................................................ttgaaaatacttcaa.................................................................................................................... Find igs database================================================ Query_seq: SMT_2099:SMT_2100|SMT_2099:SMT_2100:putative zinc-binding dehydrogenase:ribose operon repressor:->->:1992324..1992828 505 ttaannnnntcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Intra-Species Hit: Count: 2 Min: 10 Max: 505 Len: 496 Subject: smit_SMT_2099_SMT_2100|putative zinc-binding dehydrogenase:ribose operon repressor|POSITIVE:POSITIVE|[1992324,1992828]|505 HSP 1 e-value: 0.0 bit: 894.0 Len: 496 Query Start:10 Query End:505 Subject Strand: POSITIVE Subject Start: 10 Subject End: 505 .........tcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacnnnnnnncgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgcnnnnnnngtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag .........tcgccttatgatatcatcattctaattttatattycctccgatgagaaataagagactgatatatcaaataatataamcaaggtatcactcatatctttgttaaatgccatgatgtttattcgattagatgagtaaccaaaaataacaaaaaaacgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Subject: smit_SMT_1761_SMT_1762|transcriptional activator, putative:sucrose operon repressor, HTH and periplasmic binding domains|POSITIVE:POSITIVE|[1737246,1737605]|360 HSP 1 e-value: 0.0 bit: 638.0 Len: 342 Query Start:164 Query End:505 Subject Strand: POSITIVE Subject Start: 19 Subject End: 360 ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgcnnnnnnngtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgctttttttgtagaagatacgaaaaagccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataag Inter-species Hit: Count: 3 Min: 164 Max: 504 Len: 341 Subject: NC_003028_SP_1799_SP_1800|sugar-binding transcriptional regulator, LacI family:transcriptional activator, putative|NEGATIVE:NEGATIVE|[1716317,1716677]|361 HSP 1 e-value: 1.0E-129 bit: 463.0 Len: 341 Query Start:164 Query End:504 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 343 ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgcnnnnnnngtagaagatacgaaaaa-gccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataa. ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaagtctaattttgggggtgtttttgttaagaaaagaccttcaatcatttaagcaaaatgtacatctagatttatagccatctaaaactcttgctttttttatagaagatacgaaaaaagccatgaaaccaaggcttttcctgttttatgtagatgtttacacatgaaaattgaagtattttcaaaagctaattggagtgattttattcatgatgggataaatgatctggccaaaaatgattgagaaatagttgcttaaaaagcatttgcatgatactatatattgaaaggaggtgataa. Subject: NC_008533_SPD_1586_SPD_1587|sugar-binding transcriptional regulator, LacI family protein:transcriptional activator, putative|NEGATIVE:NEGATIVE|[1603959,1604319]|361 HSP 1 e-value: 1.0E-127 bit: 455.0 Len: 341 Query Start:164 Query End:504 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 343 ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgcnnnnnnngtagaagatacgaaaaa-gccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatatattgaaaggaggtgataa. ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaagtctaatttttagggtgtttttgttaagaaaagaccttcaatcatttaagaaaaatgtacatctagatttatagccctctaaaactcttgctttttttgtagaagatatgaaaaaagccatgaaaccaaggcttttcctgttttatgtagatgtttacacatgaaaattgaagtattttcaaaagctaattggagtgattttattcatgatgggataaatgatctggccaaaaatgattgagaaatagttgcttaaaaagcatttgcatgatactatatattgaaaggagttgataa. Subject: NC_003098_spr1621_spr1622|Sucrose operon repressor (SCR operon regulatory protein):hypothetical protein|NEGATIVE:NEGATIVE|[1596446,1596788]|343 HSP 1 e-value: 1.0E-119 bit: 429.0 Len: 324 Query Start:164 Query End:487 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 325 ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaaatctaatttttggggtgtttttgttaagaaaagacattcaatcatttaagcaaaatgtacatctagattcatagccctctagatctcttgcnnnnnnngtagaagatacgaaaaa-gccttgattccaaggtttttcctgttttatgtagatgtctacacatgaaaattgaagtattttcaaaagataattggagtgattttattcatgataggaaaaagaatctggacaaaaatgattgagaaatagttgcttaaaaagcgtttgcatgatactatata.................. ...................................................................................................................................................................cgctatttcgcgtttgaactgtacctcaaaagttagacagaaaaagtctaatttttagggtgtttttgttaagaaaagaccttcaatcatttaagaaaaatgtacatctagatttatagccctctaaaactcttgctttttttgtagaagatatgaaaaaagccatgaaaccaaggcttttcctgttttatgtagatgtttacacatgaaaattgaagtattttcaaaagctaattggagtgattttattcatgatgggataaatgatctggccaaaaatgattgagaaatagttgcttaaaaagcatttgcatgatactatata.................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCUAUUUCGCGUUUGAACUGUACCUCAAAAGUUAGACAGAAAAAAUCUAAUUUUUGGGGUGUUUUUGUUAAGAAAAGACAUUCAAUCAUUUAAGCAAAAUGUACAUCUAGAUUCAUAGCCCUCUAGAUCUCUUGCUUUUUUUGUAGAAGAUACGAAAAAGCCUUGAUUCCAAGGUUUUUCCUGUUUUAUGUAGAUGUCUACACAUGAAAAUUGAAGUAUUUUCAAAAGAUAAUUGGAGUGAUUUUAUUCAUGAUAGGAAAAAGAAUCUGGACAAAAAUGAUUGAGAAAUAGUUGCUUAAAAAGCGUUUGCAUGAUACUAUAUAUUGAAAGGAGGUGAUAA ((((.((((.......(((((((((((((((((((((.........)))))))))))))))((((((.......)))))).(((((((((((..((.....))...(((((((((.....(((...((((....((((((((.(((.....)))))))))))...))))...))).((((((((.....(((((....)))))((((((...((((((..((((((.......))))))..)))))))))))).)))))))).)))))))))...)))))))))))..))))))(((.....))).....................))))...)))).... (-83.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUCACCUCCUUUCAAUAUAUAGUAUCAUGCAAACGCUUUUUAAGCAACUAUUUCUCAAUCAUUUUUGUCCAGAUUCUUUUUCCUAUCAUGAAUAAAAUCACUCCAAUUAUCUUUUGAAAAUACUUCAAUUUUCAUGUGUAGACAUCUACAUAAAACAGGAAAAACCUUGGAAUCAAGGCUUUUUCGUAUCUUCUACAAAAAAAGCAAGAGAUCUAGAGGGCUAUGAAUCUAGAUGUACAUUUUGCUUAAAUGAUUGAAUGUCUUUUCUUAACAAAAACACCCCAAAAAUUAGAUUUUUUCUGUCUAACUUUUGAGGUACAGUUCAAACGCGAAAUAGCG ....................................(((.....)))..(((((((((((((((((((((..((((.(.(((((((..............................(((((((......)))))))(((((((....)))))))....))))))).(((((....))))).......).))))...)))))..((((((((.(((((((..........))))))).....)))))))).))))))))).....................(((.(((((.((((((.......)))))).))))).))).............))))))).. (-66.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 649 60 14 229 183 smit:SMT_541|5end_K03697_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpE_457842..458072_NEGATIVE 290 60 11 138 89 smit:SMT_734|5end_hypothetical_protein_639967..640197_POSITIVE 289 62 23 139 98 smit:SMT_570|5end_hypothetical_protein_488581..488811_POSITIVE 289 62 23 139 98 smit:SMT_542|5end_hypothetical_protein_457940..458170_POSITIVE 275 58 19 221 185 smit:SMT_1727|5end_uridine_kinase_1712483..1712713_POSITIVE 267 167 121 60 17 smit:SMT_664|5end_ribosomal_large_subunit_pseudouridine_synthase,_RluD_subfamily_575930..576160_NEGATIVE 266 155 112 66 23 smit:SMT_837|5end_cation_transport_ATPase_782667..782897_NEGATIVE 264 202 161 97 60 smit:SMT_1890|5end_hypothetical_protein_1843407..1843637_POSITIVE 258 28 1 180 145 smit:SMT_772|5end_spermidine/putrescine_ABC_transporter,_ATP-binding_protein_683300..683530_NEGATIVE 256 143 111 121 84 smit:SMT_1636|5end_5-formyltetrahydrofolate_cyclo-ligase_family_protein_1622568..1622798_POSITIVE 256 189 141 231 172 smit:SMT_1454|5end_cytidine_deaminase_1437886..1438116_NEGATIVE 254 196 166 45 15 smit:SMT_700|5end_putative_signal_recognition_particle_-inhibited_division_protein_611511..611741_NEGATIVE 252 40 2 88 40 smit:SMT_1634|5end_2,3,4,5-tetrahydropyridine-2-carboxylate_N-succinyltransferase,_putative_1621074..1621304_POSITIVE 250 165 122 209 164 smit:SMT_741|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_645618..645848_NEGATIVE 246 177 132 213 157 smit:SMT_2015|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1932655..1932885_POSITIVE 242 59 12 222 178 smit:SMT_900|5end_5-methyltetrahydropteroyltriglutamate--_homocysteine_methyltransferase_850616..850846_NEGATIVE 241 199 154 73 32 smit:SMT_1616|5end_putative_ABC-type_cobalamin_Fe3+-siderophores_transport_system_ATPase_component_1603547..1603777_NEGATIVE 241 340 301 172 130 smit:SMT_1450|5end_K02057_simple_sugar_transport_system_permease_protein_1433622..1433852_NEGATIVE 241 335 300 162 128 smit:SMT_1217|5end_hypothetical_protein_1176603..1176833_NEGATIVE 241 59 12 205 163 smit:SMT_854|5end_hypothetical_protein_799492..799722_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 289 171 133 57 11 smit:SMT_1470|3end_K06188_aquaporin_Z_1453266..1453416_POSITIVE 275 58 19 111 75 smit:SMT_1726|3end_tRNA_pseudouridine_synthase_B_1712453..1712603_POSITIVE 267 167 121 63 20 smit:SMT_665|3end_NAD+_kinase_575927..576077_NEGATIVE 264 202 161 77 40 smit:SMT_1889|3end_hypothetical_protein_1843467..1843617_POSITIVE 256 143 111 109 72 smit:SMT_1635|3end_putative_N-acetyldiaminopimelate_deacetylase_1622636..1622786_POSITIVE 254 196 166 33 3 smit:SMT_701|3end_hypothetical_protein_611523..611673_NEGATIVE 250 186 147 81 44 smit:SMT_728|3end_hypothetical_protein_633203..633353_NEGATIVE 244 70 24 72 29 smit:SMT_1313|3end_extramembranal_protein_1278622..1278772_POSITIVE 244 167 123 57 6 smit:SMT_760|3end_K01990_ABC-2_type_transport_system_ATP-binding_protein_665693..665843_NEGATIVE 244 41 1 87 39 smit:SMT_735|3end_putative_transposase,_ISSmu1_641395..641545_POSITIVE 241 199 154 76 35 smit:SMT_1617|3end_K02015_iron_complex_transport_system_permease_protein_1603544..1603694_NEGATIVE 241 335 300 77 43 smit:SMT_1218|3end_DNA_polymerase_I_1176688..1176838_NEGATIVE 240 164 123 67 17 smit:SMT_107|3end_ribose-phosphate_pyrophosphokinase_53450..53600_POSITIVE 239 150 104 51 1 smit:SMT_1935|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1873930..1874080_POSITIVE 239 150 104 51 1 smit:SMT_1314|3end_dTDP-4-dehydrorhamnose_3,5-epimerase_related_enzyme_1280192..1280342_POSITIVE 238 175 131 128 89 smit:SMT_774|3end_hypothetical_protein_684479..684629_NEGATIVE 237 147 108 116 68 smit:SMT_264|3end_hypothetical_protein_203321..203471_NEGATIVE 234 189 141 93 45 smit:SMT_1468|3end_pneumococcal_surface_protein,_putative_1448775..1448925_NEGATIVE 233 125 82 142 107 smit:SMT_978|3end_hypothetical_protein_925765..925915_NEGATIVE 231 86 54 52 13 smit:SMT_1499|3end_K03742_competence/damage-inducible_protein_CinA_N-terminal_domain_1483425..1483575_POSITIVE