Origin IGS: cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagatgatttatcgcattagtgagtttgcagataaatgtggagttaataaagaaacgatcagatattacgagcgaaaaatttattacaagaacctcaccgaacggaagctggttatcggatatattcatatgatgacgttaagcgtgttgggcttattaacgaatacaggaacttgtttctctttagcgagattataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgcataattggaacgaggatgttctggtttttcctcaaatagaaacagccattcatctcttcatcaaattccacaacaccannnnnttaattaattaannnnnggacttcatcttatctacacaccaagtatttataatctcgctaaagagaaacaagttcctgtattcgttaataagcccaacacgcttaacgtcatcatatgaatatatccgataaccagcttccgttcggtgaggttcttgtaataaatttttcgctcgtaatatctgatcgtttctttattaactccacatttatctgcaaactcactaatgcgataaatcatcttatttcaccccctgaatattataaaccatgtaccatagtacacggtcaagtaaattggactattttattttttcccaaagtatcactcgtatgtgattgatacttttatataatactattgattatcctaacatcccaccagaaaatccgatttaaacaccagttgtttttaaactattaagaaagtaattccactatatattccgaagacccgaaatttcatagagtagctccctagaatcatggaaaagtagtaaaaatagctg Mask Tandem Repeat Region ================================================ cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagatgatttatcgcattagtgagtttgcagataaatgtggagttaataaagaaacgatcagatattacgagcgaaaaatttattacaagaacctcaccgaacggaagctggttatcggatatattcatatgatgacgttaagcgtgttgggcttattaacgaatacaggaacttgtttctctttagcgagattataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Find is-nt database================================================ Query_seq: SMT_2087:SMT_2088|SMT_2087:SMT_2088:cadmium efflux system accessory protein:glucose-1-phosphate thymidylyltransferase:->->:1984169..1984763 595 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagatgatttatcgcattagtgagtttgcagataaatgtggagttaataaagaaacgatcagatattacgagcgaaaaatttattacaagaacctcaccgaacggaagctggttatcggatatattcatatgatgacgttaagcgtgttgggcttattaacgaatacaggaacttgtttctctttagcgagattataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2087:SMT_2088|SMT_2087:SMT_2088:cadmium efflux system accessory protein:glucose-1-phosphate thymidylyltransferase:->->:1984169..1984763 595 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagatgatttatcgcattagtgagtttgcagataaatgtggagttaataaagaaacgatcagatattacgagcgaaaaatttattacaagaacctcaccgaacggaagctggttatcggatatattcatatgatgacgttaagcgtgttgggcttattaacgaatacaggaacttgtttctctttagcgagattataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2087:SMT_2088|SMT_2087:SMT_2088:cadmium efflux system accessory protein:glucose-1-phosphate thymidylyltransferase:->->:1984169..1984763 595 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagatgatttatcgcattagtgagtttgcagataaatgtggagttaataaagaaacgatcagatattacgagcgaaaaatttattacaagaacctcaccgaacggaagctggttatcggatatattcatatgatgacgttaagcgtgttgggcttattaacgaatacaggaacttgtttctctttagcgagattataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 269 Max: 459 Len: 191 Subject: UniRef90_Q6V4U0 Cluster: MerR; n=9; Lactobacillales|Rep: MerR - Enterococcus faecium (Streptococcus faecium) HSP 1 e-value: 9.0E-19 bit: 62.0 Len: 120 Query Start:340 Query End:459 Subject Strand: null Subject Start: 25 Subject End: 65 ................................................................................................................................................................................................................................................................................................................................................... K N L L Q E P H R T E A G Y R I Y S Y D D V K R V G L I N E Y R N L - F L F S E I ........................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................... K N L L Q E P H R T E A G Y R I Y S Y D D V K R V G F I K R I Q E L G F S L N E I ........................................................................................................................................ HSP 2 e-value: 9.0E-19 bit: 54.3 Len: 75 Query Start:269 Query End:343 Subject Strand: null Subject Start: 1 Subject End: 25 ............................................................................................................................................................................................................................................................................ M I Y R I S E F A D K C G V N K E T I R Y Y E R K ............................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................................................ M I Y R I S E F A E K C G V N K E T I R Y Y E R K ............................................................................................................................................................................................................................................................ Subject: UniRef90_P22853 Cluster: Mercuric resistance operon regulatory protein; n=8; Firmicutes|Rep: Mercuric resistance operon regulatory protein - Bacillus cereus HSP 1 e-value: 5.0E-8 bit: 45.8 Len: 72 Query Start:269 Query End:340 Subject Strand: null Subject Start: 1 Subject End: 24 ............................................................................................................................................................................................................................................................................ M I Y R I S E F A D K C G V N K E T I R Y Y E R ............................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................ M K F R I G E L A D K C G V N K E T I R Y Y E R ............................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-8 bit: 34.3 Len: 114 Query Start:346 Query End:459 Subject Strand: null Subject Start: 27 Subject End: 65 ......................................................................................................................................................................................................................................................................................................................................................... L L Q E P H R T E A G Y R I Y S Y D D V K R V G L I N E Y R N L - F L F S E I ........................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................................... L I P E P E R T E K G Y R M Y S Q Q T V D R L H F I K R M Q E L G F T L N E I ........................................................................................................................................ Subject: UniRef90_Q5KVA6 Cluster: Transcriptional regulator involved in mercury resistance operon; n=1; Geobacillus kaustophilus|Rep: Transcriptional regulator involved in mercury resistance operon - Geobacillus kaustophilus HSP 1 e-value: 3.0E-7 bit: 42.4 Len: 69 Query Start:275 Query End:343 Subject Strand: null Subject Start: 4 Subject End: 26 .................................................................................................................................................................................................................................................................................. Y R I S E F A D K C G V N K E T I R Y Y E R K ............................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................................. Y R I G K L A E K C H V N K E T I R Y Y E R K ............................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-7 bit: 35.0 Len: 120 Query Start:340 Query End:459 Subject Strand: null Subject Start: 26 Subject End: 66 ................................................................................................................................................................................................................................................................................................................................................... K N L L Q E P H R T E A G Y R I Y S Y D D V K R V G L I N E Y R N L - F L F S E I ........................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................... K G L I P E T E R T E G G Y R L Y T E E T V R R I Q F I K R L Q G L G F T L A E I ........................................................................................................................................ cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 276 End: 395 ................................................................................................................................................................................................................................................................................... M A L V S L Q I N V E L I K K R S D I T S E K F I T R T S P N G S W L S D I F I ........................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 269 End: 460 ............................................................................................................................................................................................................................................................................ M I Y R I S E F A D K C G V N K E T I R Y Y E R K I Y Y K N L T E R K L V I G Y I H M M T L S V L G L L T N T G T C F S ....................................................................................................................................... Protein_Len: 57 Strand: + Start: 328 End: 498 ....................................................................................................................................................................................................................................................................................................................................... M L R A K N L L Q E P H R T E A G Y R I Y S Y D D V K R V G L I N E Y R N L F L F S E I I N T W C V D K M K S X X ................................................................................................. Protein_Len: 35 Strand: - Start: 381 End: 485 ............................................................................................................................................................................................................................................................................................................................................................................................ R I Y E Y S S T L R T P S I L S Y L F K N R K L S I I F V Q H T S L M .............................................................................................................. Protein_Len: 60 Strand: - Start: 170 End: 394 ......................................................................................................................................................................... V Q G H V I T C P K Y Y E P P S I L H N I A N T L K C I F T S N I F F R D S I V L S F N I V L V E G F P L Q N D S I N M ......................................................................................................................................................................................................... cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -3.9 Tail_Score: -3.53444 Start: 164 End: 187 Full_Region: TAGTATTATATAAAA GTATCAATC ACATAC GAGTGATAC TTTGGGAAAAAATAA ...................................................................................................................................................................GTATCAATCACATACGAGTGATAC........................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 82 HP_score: -8.6 Tail_Score: -4.06384 Start: 222 End: 241 Full_Region: GTCCAATTTACTTGA CCGTGTAC TATG GTACATGG TTTATAATATTCAGG .............................................................................................................................................................................................................................CCGTGTACTATGGTACATGG.................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SMT_2087:SMT_2088|SMT_2087:SMT_2088:cadmium efflux system accessory protein:glucose-1-phosphate thymidylyltransferase:->->:1984169..1984763 595 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Intra-Species Hit: Count: 2 Min: 1 Max: 595 Len: 595 Subject: smit_SMT_2087_SMT_2088|cadmium efflux system accessory protein:glucose-1-phosphate thymidylyltransferase|POSITIVE:POSITIVE|[1984169, 1984763]|595 HSP 1 e-value: 1.0E-149 bit: 529.0 Len: 267 Query Start:1 Query End:267 Subject Strand: POSITIVE Subject Start: 1 Subject End: 267 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-53 bit: 210.0 Len: 136 Query Start:460 Query End:595 Subject Strand: POSITIVE Subject Start: 460 Subject End: 595 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataaatacttggtgtgtagataagatgaagtccnnnnnttaattaattaannnnntggtgttgtggaatttgatgaagagatgaatggctgtttctatttgaggaaaaaccagaacatcctcgttccaattatgca Subject: smit_SMT_1234_SMT_1235|cadmium efflux system accessory protein:transcriptional regulator, MerR family|POSITIVE:POSITIVE|[1195411,1195678]|268 HSP 1 e-value: 1.0E-149 bit: 529.0 Len: 267 Query Start:1 Query End:267 Subject Strand: POSITIVE Subject Start: 1 Subject End: 267 cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ cagctatttttactacttttccatgattctagggagctactctatgaaatttcgggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 2 Min: 54 Max: 267 Len: 214 Subject: NC_004116_SAG2024_SAG2025|mercuric resistance operon regulatory protein MerR:Mn2+/Fe2+ transporter, NRAMP family|NEGATIVE:POSITIVE|[2000942,2001646]|705 HSP 1 e-value: 1.0E-113 bit: 410.0 Len: 214 Query Start:54 Query End:267 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 216 .....................................................gggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaa-aaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ .....................................................gggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ Subject: NC_004116_SAG1255_SAG1257|mercuric resistance operon regulatory protein MerR:cation-transporting ATPase, E1-E2 family|NEGATIVE:NEGATIVE|[1265349,1266611]|1263 HSP 1 e-value: 1.0E-113 bit: 410.0 Len: 214 Query Start:54 Query End:267 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 216 .....................................................gggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaa-aaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ .....................................................gggtcttcggaatatatagtggaattactttcttaatagtttaaaaacaactggtgtttaaatcggattttctggtgggatgttaggataatcaatagtattatataaaagtatcaatcacatacgagtgatactttgggaaaaaaataaaatagtccaatttacttgaccgtgtactatggtacatggtttataatattcagggggtgaaataa........................................................................................................................................................................................................................................................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGGUCUUCGGAAUAUAUAGUGGAAUUACUUUCUUAAUAGUUUAAAAACAACUGGUGUUUAAAUCGGAUUUUCUGGUGGGAUGUUAGGAUAAUCAAUAGUAUUAUAUAAAAGUAUCAAUCACAUACGAGUGAUACUUUGGGAAAAAAUAAAAUAGUCCAAUUUACUUGACCGUGUACUAUGGUACAUGGUUUAUAAUAUUCAGGGGGUGAAAUAA ...((....)).............(((((..((.................((((..((...(((((.....)))))..))..))))..........(((((((((..(((((((((.((......)).))))))))).(((.............))).........((((((((((....))))))))))))))))))).))..)))))..... (-47.62) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUUUCACCCCCUGAAUAUUAUAAACCAUGUACCAUAGUACACGGUCAAGUAAAUUGGACUAUUUUAUUUUUUCCCAAAGUAUCACUCGUAUGUGAUUGAUACUUUUAUAUAAUACUAUUGAUUAUCCUAACAUCCCACCAGAAAAUCCGAUUUAAACACCAGUUGUUUUUAAACUAUUAAGAAAGUAAUUCCACUAUAUAUUCCGAAGACCC ...((((.....(((..........(((.(((((....))))).)))....(((((((((.................(((((((((.(((....))).)))))))))...(((((.(....))))))....................))))))))).....)))...(((((((....))))))).....................)))).... (-30.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 285 189 166 139 115 smit:SMT_1235|5end_transcriptional_regulator,_MerR_family_1195539..1195769_POSITIVE 284 93 51 56 7 smit:SMT_1934|5end_homoserine_dehydrogenase_1872402..1872632_POSITIVE 258 210 164 230 174 smit:SMT_852|5end_K03978_GTP-binding_protein_798044..798274_NEGATIVE 252 94 51 62 13 smit:SMT_2026|5end_K03466_DNA_segregation_ATPase_FtsK/SpoIIIE,_S-DNA-T_family_1942432..1942662_NEGATIVE 246 87 51 213 183 smit:SMT_931|5end_cobyric_acid_synthase_884491..884721_POSITIVE 244 205 164 220 171 smit:SMT_1698|5end_CMP-binding_factor_1680092..1680322_POSITIVE 233 94 53 225 187 smit:SMT_1844|5end_hypothetical_protein_1808587..1808817_POSITIVE 230 96 51 201 153 smit:SMT_767|5end_hypothetical_protein_676454..676684_NEGATIVE 229 209 163 199 154 smit:SMT_961|5end_K02016_iron_complex_transport_system_substrate-binding_protein_907809..908039_NEGATIVE 229 87 47 60 33 smit:SMT_791|5end_thiamine_biosynthesis_protein_ThiI_702377..702607_NEGATIVE 226 208 168 100 56 smit:SMT_1880|5end_hypothetical_protein_1836854..1837084_POSITIVE 224 100 54 104 47 smit:SMT_1901|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1850537..1850767_POSITIVE 224 99 51 203 137 smit:SMT_1373|5end_K02838_ribosome_recycling_factor_1352274..1352504_NEGATIVE 223 208 164 184 148 smit:SMT_986|5end_threonyl-tRNA_synthetase_931092..931322_POSITIVE 223 208 164 46 10 smit:SMT_985|5end_guanylate_kinase_930954..931184_POSITIVE 223 208 164 184 148 smit:SMT_925|5end_DNA-directed_RNA_polymerase_omega_chain_880283..880513_NEGATIVE 216 87 63 218 193 smit:SMT_1557|5end_hypothetical_protein_1541939..1542169_POSITIVE 215 24 4 115 97 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 215 88 47 181 140 smit:SMT_1750|5end_anthranilate_phosphoribosyltransferase_1728011..1728241_POSITIVE 212 100 65 178 149 smit:SMT_514|5end_tRNA_(guanine-N(1)-)-methyltransferase_441377..441607_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 233 94 53 100 62 smit:SMT_1843|3end_transposase,_TnpA_1808542..1808692_POSITIVE 233 94 53 100 62 smit:SMT_1238|3end_transposase,_TnpA_1199180..1199330_POSITIVE 227 82 52 43 9 smit:SMT_2084|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1982973..1983123_NEGATIVE 224 100 54 107 50 smit:SMT_1900|3end_K03710_GntR_family_transcriptional_regulator_1850620..1850770_POSITIVE 210 83 48 73 42 smit:SMT_1273|3end_K02006_cobalt_transport_system_ATP-binding_protein_1237828..1237978_POSITIVE 208 80 44 56 3 smit:SMT_1359|3end_dihydroorotate_dehydrogenase_electron_transfer_subunit_1337203..1337353_NEGATIVE 208 86 50 140 104 smit:SMT_752|3end_prephenate_dehydrogenase_655688..655838_NEGATIVE 207 92 66 122 95 smit:SMT_404|3end_hypothetical_protein_334029..334179_POSITIVE 205 85 48 133 103 smit:SMT_659|3end_hypothetical_protein_569736..569886_NEGATIVE 204 208 180 30 3 smit:SMT_434|3end_orotidine_5'-phosphate_decarboxylase_376888..377038_POSITIVE 202 191 163 57 35 smit:SMT_2075|3end_phosphoribosylamine--glycine_ligase_1977769..1977919_NEGATIVE 200 188 158 122 96 smit:SMT_1116|3end_K02244_competence_protein_ComGB_1052798..1052948_NEGATIVE 200 188 155 118 86 smit:SMT_704|3end_Cof_family_protein_614548..614698_POSITIVE 200 89 48 97 49 smit:SMT_186|3end_50S_ribosomal_protein_L18_123059..123209_POSITIVE 199 208 164 109 56 smit:SMT_1787|3end_phosphoribosylformylglycinamidine_synthase_1763668..1763818_NEGATIVE 199 209 168 86 50 smit:SMT_777|3end_hypothetical_protein_686618..686768_NEGATIVE 198 189 146 51 10 smit:SMT_726|3end_ImpB/MucB/SamB_family_protein_630412..630562_NEGATIVE 197 88 48 46 5 smit:SMT_948|3end_hypothetical_protein_predicted_by_Glimmer/Critica_896655..896805_NEGATIVE 196 157 123 46 13 smit:SMT_1988|3end_two-component_sensor_kinase_YesM_1916472..1916622_NEGATIVE 196 99 51 65 12 smit:SMT_1059|3end_NAD(P)H-flavin_oxidoreductase_998172..998322_POSITIVE