Origin IGS: ggagggggatcccctcttttttgatgcttycmagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaagcccgcaccgatcgccctttcccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctnnnnnttaattaattaannnnntgcgggacaattcttccttcccctctgccttttcttgccggagcgcctcgcctccggccgcataagtttcgtcgtccttgatgacttcgtccgctggttcctcgccttcacccttgctatctccccgggcttcccgtcccccctcttgctccgtagtgtcttttgctgtcggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ccaatcaggatggtatcgcataaaaaggctaacgtccgaagacacaaaggagccagcagaaaaacgcgcggaaaagaaagcccaggaccccgactggcggaggccaggactcacaaaaaataccacgagaaaccgagaacggagagagagagggcaagagacagtccgacagcaaaagacactacggagcaagaggggggacgggaagcccggggagatagcaagggtgaaggcgaggaaccagcggacgaagtcatcaaggacgacgaaacttatgcggccggaggcgaggcgctccggcaagaaaaggcagaggggaaggaagaattgtcccgcannnnnttaattaattaannnnnagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtgggaaagggcgatcggtgcgggcttcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctkgraagcatcaaaaaagaggggatccccctcc Mask Tandem Repeat Region ================================================ ggagggggatcccctcttttttgatgcttycmagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaagcccgcaccgatcgccctttcccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctnnnnnttaattaattaannnnntgcgggacaattcttccttcccctctgccttttcttgccggagcgcctcgcctccggccgcataagtttcgtcgtccttgatgacttcgtccgctggttcctcgccttcacccttgctatctccccgggcttcccgtcccccctcttgctccgtagtgtcttttgctgtcggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Find is-nt database================================================ Query_seq: SMT_2045:SMT_2046|SMT_2045:SMT_2046:K+ transport system, NAD-binding component:choline binding protein C:-><-:1956819..1957369 551 ggagggggatcccctcttttttgatgcttycmagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaagcccgcaccgatcgccctttcccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctnnnnnttaattaattaannnnntgcgggacaattcttccttcccctctgccttttcttgccggagcgcctcgcctccggccgcataagtttcgtcgtccttgatgacttcgtccgctggttcctcgccttcacccttgctatctccccgggcttcccgtcccccctcttgctccgtagtgtcttttgctgtcggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2045:SMT_2046|SMT_2045:SMT_2046:K+ transport system, NAD-binding component:choline binding protein C:-><-:1956819..1957369 551 ggagggggatcccctcttttttgatgcttycmagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaagcccgcaccgatcgccctttcccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctnnnnnttaattaattaannnnntgcgggacaattcttccttcccctctgccttttcttgccggagcgcctcgcctccggccgcataagtttcgtcgtccttgatgacttcgtccgctggttcctcgccttcacccttgctatctccccgggcttcccgtcccccctcttgctccgtagtgtcttttgctgtcggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2045:SMT_2046|SMT_2045:SMT_2046:K+ transport system, NAD-binding component:choline binding protein C:-><-:1956819..1957369 551 ggagggggatcccctcttttttgatgcttycmagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaagcccgcaccgatcgccctttcccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctnnnnnttaattaattaannnnntgcgggacaattcttccttcccctctgccttttcttgccggagcgcctcgcctccggccgcataagtttcgtcgtccttgatgacttcgtccgctggttcctcgccttcacccttgctatctccccgggcttcccgtcccccctcttgctccgtagtgtcttttgctgtcggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 35 Max: 383 Len: 349 Subject: UniRef90_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia spumigena CCY9414|Rep: Beta-D-galactosidase - Nodularia spumigena CCY9414 HSP 1 e-value: 5.0E-19 bit: 96.3 Len: 147 Query Start:35 Query End:181 Subject Strand: null Subject Start: 24 Subject End: 72 .................................. H T G L A V V L Q G L V R P R L R G T E L E F W R N S E E A R T D R P F P Q L R S L N G E W R L M .................................................................................................................................................................................................................................................................................................................................................................................. .................................. H T G L A V V L Q G L V R P R L T G T E L E F W R N S E E A R T D R P S Q Q L R S L N G E W R L M .................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q97SI9 Cluster: Hypothetical protein; n=3; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae HSP 1 e-value: 5.0E-8 bit: 59.7 Len: 168 Query Start:216 Query End:383 Subject Strand: null Subject Start: 7 Subject End: 62 ....................................................................................................................................................................................................................... T A K D T T E Q E G G R E A R G D S K G E G E E P A D E V I K D D E T Y A A G G E A L R Q E K A E G K E E L S R ........................................................................................................................................................................ ....................................................................................................................................................................................................................... S A K D I F E Q E F G R E V R G Y N K V E V D E F L D D V I K D Y E T Y A A L V K S L R Q E I A D L K E E L T R ........................................................................................................................................................................ Subject: UniRef90_A3CPY3 Cluster: Conserved DivIVA-like protein, putative; n=1; Streptococcus sanguinis SK36|Rep: Conserved DivIVA-like protein, putative - Streptococcus sanguinis (strain SK36) HSP 1 e-value: 8.0E-6 bit: 52.4 Len: 165 Query Start:219 Query End:383 Subject Strand: null Subject Start: 7 Subject End: 61 .......................................................................................................................................................................................................................... T A K D T T E Q E G G R E A R G D S K G E G E E P A D E V I K D D E T Y A A G G E A L R Q E K A E G K E E L S ........................................................................................................................................................................ .......................................................................................................................................................................................................................... T A K D I F D Q D F K R E V R G Y S K S E V D E F L D D I I K D Y E T Y A A L V K E L R E E N R R L K E E L A ........................................................................................................................................................................ ggagggggatcccctcttttttgatgcttycmagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggtattttctnnnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 44 End: 202 ........................................... M A V V L Q G L V R P R L R G T E L E F W R N S E E A R T D R P F P Q L R S L N G E W R L M R Y F L X X N ............................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 49 Strand: + Start: 292 End: 438 ................................................................................................................................................................................................................................................................................................... M M T S S A G S S P S P L L S P R A S R P P S C S V V S F A V G L S L A L S L S V L G F S W Y F L ................................................................................................................. Protein_Len: 48 Strand: + Start: 377 End: 520 ........................................................................................................................................................................................................................................................................................................................................................................................ M L S D C L L P S L S P F S V S R G I F C E S W P P P V G V L G F L F R A F F C W L L C V F G R ............................... Protein_Len: 35 Strand: + Start: 445 End: 549 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ M A S A S R G P G L S F P R V F L L A P L C L R T L A F L C D T I L I .. Protein_Len: 60 Strand: + Start: 249 End: 551 ........................................................................................................................................................................................................................................................ M P E R L A S G R I S F V V L D D F V R W F L A F T L A I S P G F P S P L L L R S V F C C R T V S C P L S L R S R F L V Protein_Len: 33 Strand: - Start: 334 End: 432 ............................................................................................................................................................................................................................................................................................................................................. R G P S G T G G R A G Y H R K S D S Q R K G E R E G N E T E R P M ....................................................................................................................... Protein_Len: 60 Strand: - Start: 209 End: 532 ................................................................................................................................................................................................................ G R K S R L T K Q Q R V T E Q G R E R R E R N R T T N K T L G P R R W D P D Q A K K E A R K E A P E K T D E S T L R K M ................... Protein_Len: 60 Strand: - Start: 201 End: 548 ........................................................................................................................................................................................................ T D K A T P S D R A R E R E T R P K E H Y K K H T R A E A L R P G P S E K G R T K R S A G K H R R V N A K K H S V M R M ... Protein_Len: 45 Strand: - Start: 68 End: 202 ................................................................... D S R S E P T G L E F E P T I A F F G A G I A R E W L Q A A Q I A F P A Q H P I K X X X M ............................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 180 S P S G R K K S A X X C V P S A T T K C P R T R G L S L P V S S S N Q R L L S S A R V S R G K G C N R L R F P S H R R M ................................................................................................................................................................................................................................................................................................................................................................................... ggagggggatcccctcttttttgatgcttycmagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggtattttctnnnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggagggggatcccctcttttttgatgcttycmagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggtattttctnnnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 82 HP_score: -8.1 Tail_Score: -4.64861 Start: 442 End: 472 Full_Region: TGGTATTTTTTGTGA GTCCTGGCCTCCG CCAGT CGGGGTCCTGGGC TTTCTTTTCCGCGCG .........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCCTCCGCCAGTCGGGGTCCTGGGC............................................................................... Find igs database================================================ Query_seq: SMT_2045:SMT_2046|SMT_2045:SMT_2046:K+ transport system, NAD-binding component:choline binding protein C:-><-:1956819..1957369 551 ggagggggatcccctcttttttgatgcttycmagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggtattttctnnnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg Intra-Species Hit: Count: 1 Min: 1 Max: 551 Len: 551 Subject: smit_SMT_2045_SMT_2046|K+ transport system, NAD-binding component:choline binding protein C|POSITIVE:NEGATIVE|[1956819,1957369]|551 HSP 1 e-value: 8.0E-91 bit: 335.0 Len: 168 Query Start:384 Query End:551 Subject Strand: POSITIVE Subject Start: 384 Subject End: 551 ...............................................................................................................................................................................................................................................................................................................................................................................................cggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg ...............................................................................................................................................................................................................................................................................................................................................................................................cggactgtctcttgccctctctctctccgttctcggtttctcgtggtattttttgtgagtcctggcctccgccagtcggggtcctgggctttcttttccgcgcgtttttctgctggctcctttgtgtcttcggacgttagcctttttatgcgataccatcctgattgg HSP 2 e-value: 3.0E-7 bit: 58.4 Len: 29 Query Start:1 Query End:29 Subject Strand: POSITIVE Subject Start: 1 Subject End: 29 ggagggggatcccctcttttttgatgctt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ggagggggatcccctcttttttgatgctt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGAGGGGGAUCCCCUCUUUUUUGAUGCUUYCMAGCACACUGGACUGGCCGUCGUUUUACAAGGUCUAGUCCGACCUAGACUCAGGGGUACCGAGCUCGAAUUCUGGCGUAAUAGCGAAGAAGCCCGCACCGAUCGCCCUUUCCCACAGUUGCGCAGCCUGAAUGGCGAAUGGCGCCUGAUGCGGUAUUUUCUNNNNNUUAAUUAAUUAANNNNNUGCGGGACAAUUCUUCCUUCCCCUCUGCCUUUUCUUGCCGGAGCGCCUCGCCUCCGGCCGCAUAAGUUUCGUCGUCCUUGAUGACUUCGUCCGCUGGUUCCUCGCCUUCACCCUUGCUAUCUCCCCGGGCUUCCCGUCCCCCCUCUUGCUCCGUAGUGUCUUUUGCUGUCGGACUGUCUCUUGCCCUCUCUCUCUCCGUUCUCGGUUUCUCGUGGUAUUUUUUGUGAGUCCUGGCCUCCGCCAGUCGGGGUCCUGGGCUUUCUUUUCCGCGCGUUUUUCUGCUGGCUCCUUUGUGUCUUCGGACGUUAGCCUUUUUAUGCGAUACCAUCCUGAUUGG (((((((...)))))))....((.((((....))))))..(((.(((..(((((.....(((((...((((((...((((.((((((..((.(((..(((....(((((....((((((((((((...(((((.((........(((.(((((.(((.((((.(((((..((.(((....((((..............................(((((((...........))))..............(((((((.((...))))))))).)))........((((((...)))))).....)))).))).)))))))))))...............((((...))))...........))).)))))))).....)).)))))..........(((((........(((....)))...((((..(......)..))))..(((((....)))))..)))))...)))).)))))...)))))))).))).)))))..)))))).))))))))))....))))).....))))).))))))....... (-168.92) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCAAUCAGGAUGGUAUCGCAUAAAAAGGCUAACGUCCGAAGACACAAAGGAGCCAGCAGAAAAACGCGCGGAAAAGAAAGCCCAGGACCCCGACUGGCGGAGGCCAGGACUCACAAAAAAUACCACGAGAAACCGAGAACGGAGAGAGAGAGGGCAAGAGACAGUCCGACAGCAAAAGACACUACGGAGCAAGAGGGGGGACGGGAAGCCCGGGGAGAUAGCAAGGGUGAAGGCGAGGAACCAGCGGACGAAGUCAUCAAGGACGACGAAACUUAUGCGGCCGGAGGCGAGGCGCUCCGGCAAGAAAAGGCAGAGGGGAAGGAAGAAUUGUCCCGCANNNNNUUAAUUAAUUAANNNNNAGAAAAUACCGCAUCAGGCGCCAUUCGCCAUUCAGGCUGCGCAACUGUGGGAAAGGGCGAUCGGUGCGGGCUUCUUCGCUAUUACGCCAGAAUUCGAGCUCGGUACCCCUGAGUCUAGGUCGGACUAGACCUUGUAAAACGACGGCCAGUCCAGUGUGCUKGRAAGCAUCAAAAAAGAGGGGAUCCCCCUCC .......(((((((.(((......(((((((..((((((((((.((..((.((((((.(((...(.((.((.........(((.(..((((..(((((....)))))..(((....................(((....))).........((((........))))...................)))......))))..))))...)))).)..........((((((.(((((((((...((((((((.(((......))).......(((.(((.(((((((((...)).)))))))........))).)))...........)))).))))...............................(((((((...((((.(((.((((....((...))....)))))))..))))...)))))))..))))))))).)))).))....)))..))).))).))..)).))))...))))))))).))))......)))..)))).)))...(((((....))))).......((((((...)))))). (-173.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1071 110 61 224 175 smit:SMT_2030|5end_chromosomal_replication_initiator_protein_DnaA_1945167..1945397_NEGATIVE 1071 110 61 164 115 smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE 1071 110 61 203 154 smit:SMT_1966|5end_DNA_polymerase_III_alpha_subunit_1897934..1898164_POSITIVE 1071 110 61 164 115 smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE 1071 110 61 204 155 smit:SMT_1926|5end_mevalonate_kinase_1867692..1867922_POSITIVE 1071 110 61 185 136 smit:SMT_1885|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1840057..1840287_NEGATIVE 1060 109 61 231 183 smit:SMT_1672|5end_hypothetical_protein_1660051..1660281_NEGATIVE 1046 90 41 227 178 smit:SMT_1927|5end_cell_division_protein_FtsH_1868779..1869009_NEGATIVE 1046 90 41 230 181 smit:SMT_1873|5end_K02006_cobalt_transport_system_ATP-binding_protein_1831936..1832166_POSITIVE 1029 190 141 56 6 smit:SMT_1981|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912261..1912491_POSITIVE 945 90 41 156 108 smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE 906 76 33 231 188 smit:SMT_714|5end_hypothetical_protein_predicted_by_Glimmer/Critica_620979..621209_NEGATIVE 783 72 33 124 85 smit:SMT_1977|5end_endopeptidase_O_1907832..1908062_POSITIVE 669 540 492 206 157 smit:SMT_301|5end_hypothetical_protein_244086..244316_POSITIVE 620 63 26 115 77 smit:SMT_1928|5end_O-methyltransferase_family_protein_1869652..1869882_NEGATIVE 488 280 235 134 69 smit:SMT_1915|5end_pyridoxine_biosynthesis_protein_1860329..1860559_POSITIVE 447 470 426 88 31 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 425 476 432 156 105 smit:SMT_1943|5end_alpha/beta_hydrolase_fold_1878968..1879198_NEGATIVE 414 468 423 225 163 smit:SMT_1888|5end_K02026_multiple_sugar_transport_system_permease_protein_1842088..1842318_POSITIVE 412 158 113 181 134 smit:SMT_1986|5end_mercuric_reductase_1914843..1915073_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1046 90 41 64 15 smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE 1033 180 131 54 5 smit:SMT_1954|3end_6-phospho-beta-glucosidase_1888831..1888981_POSITIVE 906 76 33 81 38 smit:SMT_955|3end_acyltransferase_family_protein_904703..904853_POSITIVE 893 192 151 44 3 smit:SMT_1970|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903032..1903182_POSITIVE 650 538 492 150 104 smit:SMT_300|3end_hypothetical_protein_244113..244263_POSITIVE 620 63 26 77 39 smit:SMT_1929|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1869690..1869840_NEGATIVE 424 299 252 61 6 smit:SMT_1695|3end_ribulose-phosphate_3-epimerase_1678299..1678449_POSITIVE 422 166 121 70 24 smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE 412 185 143 90 44 smit:SMT_1175|3end_K03307_solute:Na+_symporter,_SSS_family_1126305..1126455_NEGATIVE 391 283 241 52 11 smit:SMT_1914|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1860324..1860474_POSITIVE 386 124 83 70 26 smit:SMT_1415|3end_carboxynorspermidine_decarboxylase_1398443..1398593_NEGATIVE 382 528 482 80 28 smit:SMT_2053|3end_hypothetical_membrane_associated_protein_1963754..1963904_NEGATIVE 379 484 444 53 8 smit:SMT_1944|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1879075..1879225_NEGATIVE 375 185 141 72 25 smit:SMT_109|3end_beta-galactosidase_57523..57673_POSITIVE 373 344 303 71 16 smit:SMT_1947|3end_lysine_decarboxylase_1882313..1882463_NEGATIVE 373 160 120 87 35 smit:SMT_1786|3end_phenylalanyl-tRNA_synthetase_beta_chain_1763235..1763385_NEGATIVE 369 269 236 150 110 smit:SMT_1627|3end_hypothetical_protein_1616089..1616239_NEGATIVE 369 358 312 137 87 smit:SMT_852|3end_K03978_GTP-binding_protein_797457..797607_NEGATIVE 369 158 111 56 3 smit:SMT_836|3end_cell_surface_protein_precursor_777664..777814_NEGATIVE 367 294 252 71 17 smit:SMT_1606|3end_glutamate_racemase_1596731..1596881_POSITIVE