Origin IGS: atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 accacaaccagttgctccaggaaaccagtagcacccttttcagcacactggggtcatagctggttcctgatctaggtgnnnnnttaattaattaannnnncccaatacgcaaaccgcctctccccgcgcgtgggcgatttcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagggtgatgcctatatcgttcctcatggcaatcacttccactatattccgaagagtgat Mask Tandem Repeat Region ================================================ atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Find is-nt database================================================ Query_seq: SMT_2044:SMT_2045|SMT_2044:SMT_2045:transcriptional activator TipA, putative:K+ transport system, NAD-binding component:<-->:1955976..1956278 303 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2044:SMT_2045|SMT_2044:SMT_2045:transcriptional activator TipA, putative:K+ transport system, NAD-binding component:<-->:1955976..1956278 303 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2044:SMT_2045|SMT_2044:SMT_2045:transcriptional activator TipA, putative:K+ transport system, NAD-binding component:<-->:1955976..1956278 303 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 82 End: 213 ................................................................................. M F P D L G D H P S T G G S S R V D L Q A C K L C I N E I A H A R G E A V C V L G X X N .......................................................................................... Protein_Len: 40 Strand: + Start: 98 End: 217 ................................................................................................. M T I L A Q G D P L E S T C R H A S S A L M K S P T R G E R R F A Y W X X L I N ...................................................................................... Protein_Len: 39 Strand: - Start: 97 End: 213 ................................................................................................ T V M R A C P S G R S D V Q L C A L E A N I F D G V R P S L R N A Y Q X X X M .......................................................................................... Protein_Len: 55 Strand: - Start: 3 End: 167 .. V R R F I T S T I A M L F S I P M V R E L V S P D Y S N G S R P S W G L V P P D E L T S R C A H L S Q M L S M ........................................................................................................................................ atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_2044:SMT_2045|SMT_2044:SMT_2045:transcriptional activator TipA, putative:K+ transport system, NAD-binding component:<-->:1955976..1956278 303 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt Intra-Species Hit: Count: 40 Min: 1 Max: 303 Len: 303 Subject: smit_SMT_2044_SMT_2045|transcriptional activator TipA, putative:K+ transport system, NAD-binding component|NEGATIVE:POSITIVE|[1955976,1956278]|303 HSP 1 e-value: 1.0E-147 bit: 523.0 Len: 303 Query Start:1 Query End:303 Subject Strand: POSITIVE Subject Start: 1 Subject End: 303 atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattnnnnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt atcactcttcggaatatagtggaagtgattgccatgaggaacgatataggcatcaccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattgggnnnnnttaattaattaannnnncacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtgctactggtttcctggagcaactggttgtggt HSP 2 e-value: 2.0E-13 bit: 77.8 Len: 47 Query Start:226 Query End:272 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 100 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaagggtg............................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaagggtg............................... HSP 3 e-value: 2.0E-13 bit: 77.8 Len: 47 Query Start:54 Query End:100 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 272 .....................................................caccctttccagcacactggggtcatagctgtttcctgatctaggtg........................................................................................................................................................................................................... .....................................................cacccttttcagcacactggggtcatagctggttcctgatctaggtg........................................................................................................................................................................................................... Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 4.0E-67 bit: 256.0 Len: 145 Query Start:56 Query End:200 Subject Strand: NEGATIVE Subject Start: 356 Subject End: 500 .......................................................ccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .......................................................ccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 3.0E-12 bit: 73.8 Len: 45 Query Start:226 Query End:270 Subject Strand: POSITIVE Subject Start: 456 Subject End: 500 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaaggg................................. .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaaggg................................. Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 4.0E-67 bit: 256.0 Len: 145 Query Start:56 Query End:200 Subject Strand: POSITIVE Subject Start: 12 Subject End: 156 .......................................................ccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .......................................................ccctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 3.0E-12 bit: 73.8 Len: 45 Query Start:226 Query End:270 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 56 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaaggg................................. .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaaggg................................. Subject: smit_SMT_2029_SMT_2030|acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA|POSITIVE:NEGATIVE|[1944345,1944879]|535 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 360 Subject End: 502 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 460 Subject End: 502 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: POSITIVE Subject Start: 43 Subject End: 185 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 85 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_2000_SMT_2001|hypothetical protein:membrane protease protein family|NEGATIVE:POSITIVE|[1923199,1923526]|328 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 153 Subject End: 295 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 253 Subject End: 295 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1985_SMT_1986|hypothetical protein predicted by Glimmer/Critica:mercuric reductase|NEGATIVE:POSITIVE|[1914662,1914982]|321 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: POSITIVE Subject Start: 122 Subject End: 264 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 164 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 503 Subject End: 645 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 603 Subject End: 645 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: POSITIVE Subject Start: 453 Subject End: 595 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 453 Subject End: 495 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: POSITIVE Subject Start: 38 Subject End: 180 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 38 Subject End: 80 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 656 Subject End: 798 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 756 Subject End: 798 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: POSITIVE Subject Start: 53 Subject End: 195 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 95 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 875 Subject End: 1017 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 975 Subject End: 1017 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 1183 Subject End: 1325 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 1283 Subject End: 1325 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376 HSP 1 e-value: 6.0E-66 bit: 252.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 205 Subject End: 347 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 305 Subject End: 347 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 2.0E-62 bit: 240.0 Len: 143 Query Start:58 Query End:200 Subject Strand: NEGATIVE Subject Start: 589 Subject End: 731 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggakaggcgsyttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 689 Subject End: 731 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1558_SMT_1559|hypothetical protein:6- phosphofructokinase|NEGATIVE:NEGATIVE|[1544149, 1544703]|555 HSP 1 e-value: 6.0E-60 bit: 232.0 Len: 135 Query Start:58 Query End:192 Subject Strand: POSITIVE Subject Start: 169 Subject End: 303 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtt............................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt............................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 211 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1913_SMT_1914|RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC|POSITIVE:POSITIVE|[1858826,1859625]|800 HSP 1 e-value: 3.0E-55 bit: 216.0 Len: 109 Query Start:57 Query End:165 Subject Strand: POSITIVE Subject Start: 596 Subject End: 704 ........................................................cctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaa.......................................................................................................................................... ........................................................cctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaa.......................................................................................................................................... HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 44 Query Start:226 Query End:269 Subject Strand: NEGATIVE Subject Start: 596 Subject End: 639 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaagg.................................. .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaagg.................................. Subject: smit_SMT_1967_SMT_1968|dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein:transcription-repair coupling factor|NEGATIVE:NEGATIVE|[1899774,1900040]|267 HSP 1 e-value: 8.0E-53 bit: 208.0 Len: 121 Query Start:80 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 121 ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1690_SMT_1691|K06148 ATP-binding cassette, subfamily C, bacterial:putative deoxyribonuclease|NEGATIVE:POSITIVE|[1674870, 1675117]|248 HSP 1 e-value: 8.0E-53 bit: 208.0 Len: 121 Query Start:80 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 121 ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_779_SMT_780|ribonuclease BN, putative:peptidase family U32|NEGATIVE:NEGATIVE|[688621,688841]|221 HSP 1 e-value: 8.0E-53 bit: 208.0 Len: 121 Query Start:80 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 121 ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_387_SMT_388|hypothetical protein predicted by Glimmer/Critica:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[321179,321311]|133 HSP 1 e-value: 8.0E-53 bit: 208.0 Len: 121 Query Start:80 Query End:200 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 133 ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 3.0E-52 bit: 206.0 Len: 108 Query Start:58 Query End:165 Subject Strand: POSITIVE Subject Start: 97 Subject End: 204 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaa.......................................................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcatttatgaa.......................................................................................................................................... HSP 2 e-value: 3.0E-37 bit: 157.0 Len: 95 Query Start:106 Query End:200 Subject Strand: NEGATIVE Subject Start: 807 Subject End: 901 .........................................................................................................cctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .........................................................................................................cctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 3 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 139 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 119 Query Start:82 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 119 .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 49 Query Start:152 Query End:200 Subject Strand: POSITIVE Subject Start: 227 Subject End: 275 .......................................................................................................................................................tctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .......................................................................................................................................................tctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1926_SMT_1927|mevalonate kinase:cell division protein FtsH|POSITIVE:NEGATIVE|[1868123,1868497]|375 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 119 Query Start:82 Query End:200 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 375 .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... HSP 2 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:93 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1884_SMT_1885|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1839299,1839919]|621 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 119 Query Start:82 Query End:200 Subject Strand: NEGATIVE Subject Start: 503 Subject End: 621 .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1873_SMT_1874|K02006 cobalt transport system ATP-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1832412,1832712]|301 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 119 Query Start:82 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 119 .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1955_SMT_1956|carbamoyl-phosphate synthase small chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1889499,1889626]|128 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 121 Query Start:80 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 121 ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ...............................................................................agctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaagcggtttgcgtatt....................................................................................................... Subject: smit_SMT_2001_SMT_2002|membrane protease protein family:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1923950,1924234]|285 HSP 1 e-value: 3.0E-49 bit: 196.0 Len: 119 Query Start:82 Query End:200 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 285 .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcgggttgcgtatt....................................................................................................... Subject: smit_SMT_2024_SMT_2025|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1940751,1941084]|334 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:93 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1981_SMT_1982|K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:conserved hypothetical protein|POSITIVE:POSITIVE|[1912929,1913175]|247 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:93 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1942_SMT_1943|zinc metalloprotease ZmpB, truncated:alpha/beta hydrolase fold|POSITIVE:NEGATIVE|[1878445,1878659]|215 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:93 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1887_SMT_1888|LicC protein:K02026 multiple sugar transport system permease protein|POSITIVE:POSITIVE|[1841801,1842227]|427 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 108 Query Start:93 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... ............................................................................................tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1851_SMT_1852|ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme|NEGATIVE:NEGATIVE|[1815812,1816556]|745 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 103 Query Start:98 Query End:200 Subject Strand: NEGATIVE Subject Start: 643 Subject End: 745 .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_325_SMT_326|K02029 polar amino acid transport system permease protein:K02029 polar amino acid transport system permease protein|NEGATIVE:NEGATIVE|[263114,263306]|193 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 103 Query Start:98 Query End:200 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 193 .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1971_SMT_1972|hypothetical protein predicted by Glimmer/Critica:uncharacterized conserved phage related protein|POSITIVE:POSITIVE|[1903587,1903801]|215 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 103 Query Start:98 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtatt....................................................................................................... .................................................................................................gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaagcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1977_SMT_1978|endopeptidase O:hypothetical protein|POSITIVE:NEGATIVE|[1908515,1908855]|341 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 69 Query Start:57 Query End:125 Subject Strand: POSITIVE Subject Start: 71 Subject End: 139 ........................................................cctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctc.................................................................................................................................................................................. ........................................................cctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctc.................................................................................................................................................................................. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 44 Query Start:226 Query End:269 Subject Strand: NEGATIVE Subject Start: 71 Subject End: 114 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaagg.................................. .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaagg.................................. Subject: smit_SMT_1927_SMT_1928|cell division protein FtsH:O-methyltransferase family protein|NEGATIVE:NEGATIVE|[1868870,1869247]|378 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 68 Query Start:58 Query End:125 Subject Strand: NEGATIVE Subject Start: 248 Subject End: 315 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctc.................................................................................................................................................................................. .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctc.................................................................................................................................................................................. HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 273 Subject End: 315 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... Subject: smit_SMT_2005_SMT_2006|pullulanase, type I:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1926380,1926611]|232 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 67 Query Start:58 Query End:124 Subject Strand: NEGATIVE Subject Start: 109 Subject End: 175 .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcct................................................................................................................................................................................... .........................................................ctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcct................................................................................................................................................................................... HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 43 Query Start:226 Query End:268 Subject Strand: POSITIVE Subject Start: 133 Subject End: 175 .................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................... .................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................... HSP 3 e-value: 3.0E-6 bit: 54.0 Len: 27 Query Start:174 Query End:200 Subject Strand: POSITIVE Subject Start: 1 Subject End: 27 .............................................................................................................................................................................cgcgcggggagaggcggtttgcgtatt....................................................................................................... .............................................................................................................................................................................cgcgcggggagaggcggtttgcgtatt....................................................................................................... Subject: smit_SMT_1956_SMT_1957|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1889801,1890784]|984 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 42 Query Start:57 Query End:98 Subject Strand: NEGATIVE Subject Start: 721 Subject End: 762 ........................................................cctttccagcacactggggtcatagctgtttcctgatctagg............................................................................................................................................................................................................. ........................................................cctttccagcacactggggtcatagctgtttcctgatctagg............................................................................................................................................................................................................. HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 42 Query Start:228 Query End:269 Subject Strand: POSITIVE Subject Start: 721 Subject End: 762 ...................................................................................................................................................................................................................................cctagatcaggaaccagctatgaccccagtgtgctgaaaagg.................................. ...................................................................................................................................................................................................................................cctagatcaggaaacagctatgaccccagtgtgctggaaagg.................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCACUCUUCGGAAUAUAGUGGAAGUGAUUGCCAUGAGGAACGAUAUAGGCAUCACCCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUAAUGAAAUCGCCCACGCGCGGGGAGAGGCGGUUUGCGUAUUGGGNNNNNUUAAUUAAUUAANNNNNCACCUAGAUCAGGAACCAGCUAUGACCCCAGUGUGCUGAAAAGGGUGCUACUGGUUUCCUGGAGCAACUGGUUGUGGU (((((.((((((((..((((((.......(((((((........))).)))).((((((((.((((((((((((((((((((((.(((((((((((((((.((.((((.....))))))..((..((..((.((((.((((((......)).))))..........((.(((.(....)))).))...)))).)).))..)).......................))))))))))))))).)))))))))))))))))))))).))))))))))))))..)))).)))).........))))) (-132.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACCACAACCAGUUGCUCCAGGAAACCAGUAGCACCCUUUUCAGCACACUGGGGUCAUAGCUGGUUCCUGAUCUAGGUGNNNNNUUAAUUAAUUAANNNNNCCCAAUACGCAAACCGCCUCUCCCCGCGCGUGGGCGAUUUCAUUAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGGGUGAUGCCUAUAUCGUUCCUCAUGGCAAUCACUUCCACUAUAUUCCGAAGAGUGAU ..(((.....((((((..(((((....(((((((((((((((((((((((((((((((((((.(((((((((((((((..............................((.....))...(((..(((((.(((.(((((..(((..(..((.((((((....))))))))..)..))).)))))))).)))))..)))....))))))))))))))).)))))))))))))))))))))))))))))))....))))....)))))...))))))..((((...........)))).))).. (-136.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1097 150 101 226 177 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 1097 150 101 199 150 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 1097 150 101 68 19 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1097 150 101 217 168 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 1097 150 101 162 113 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 1097 150 101 162 113 smit:SMT_1961|5end_K07485_transposase_1894206..1894436_POSITIVE 1097 150 101 162 113 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 1097 150 101 206 157 smit:SMT_1954|5end_6-phospho-beta-glucosidase_1888548..1888778_POSITIVE 1097 150 101 197 148 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 1097 150 101 162 113 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 1097 150 101 211 162 smit:SMT_1155|5end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099665..1099895_NEGATIVE 1097 150 101 162 113 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 1097 150 101 83 34 smit:SMT_464|5end_ribonuclease_Z_402867..403097_POSITIVE 1097 150 101 162 113 smit:SMT_388|5end_branched-chain_amino_acid_transport_system_II_carrier_protein_321172..321402_POSITIVE 1075 160 111 146 97 smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE 1071 140 91 231 182 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 1071 140 91 228 179 smit:SMT_1686|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1670175..1670405_POSITIVE 1049 120 71 211 162 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 862 100 55 188 138 smit:SMT_621|5end_K03346_replication_initiation_and_membrane_attachment_protein_528794..529024_POSITIVE 862 100 55 112 62 smit:SMT_620|5end_hypothetical_protein_predicted_by_Glimmer/Critica_528718..528948_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 963 190 141 68 19 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE 934 190 141 73 24 smit:SMT_1956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1889537..1889687_NEGATIVE 786 270 226 127 83 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 786 270 226 116 72 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 756 270 226 116 72 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 753 269 226 115 72 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 737 270 226 133 83 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 735 270 226 134 88 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 720 268 226 57 15 smit:SMT_2030|3end_chromosomal_replication_initiator_protein_DnaA_1944790..1944940_NEGATIVE 720 268 226 125 83 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 720 268 226 130 88 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 720 268 226 125 83 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 720 268 226 114 72 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 720 268 226 53 11 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE 720 268 226 125 83 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 720 268 226 114 72 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 720 268 226 130 88 smit:SMT_1852|3end_1,4-alpha-glucan_branching_enzyme_1816467..1816617_NEGATIVE 720 268 226 61 19 smit:SMT_479|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_415604..415754_NEGATIVE 696 278 231 124 77 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 675 269 226 131 88 smit:SMT_713|3end_heat_shock_protein_HtpX_620505..620655_NEGATIVE