Origin IGS: ttcacctgaaactaagtttacttttgcttcacgtgtgaattttgcttcttgtgctactggttttggagtgccatcttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttactgtttktttaratctttttcttccaagccagctgggtatttaggtccgtctggattgtttggatcaacaggtgtccctggtggttttgggtgatctggtgtactggtacacacggtctttaagtgtactgtgaactctgtcagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtggaagggggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcgga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccccttccacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgnnnnnttaattaattaannnnntcgtggagatcagagctcaacaagatatgagtgttctatcatatccacagatgcgtcttgataagagtcgcactgacagagttcacagtacacttaaagaccgtgtgtaccagtacaccagatcacccaaaaccaccagggacacctgttgatccaaacaatccagacggacctaaatacccagctggcttggaagaaaaagatytaaamaaacagtaacacgtacaatcacatacgtatacgaagatggcactccagtattaagcgaagatggcactccaaaaccagtagcacaagaagcaaaattcacacgtgaagcaaaagtaaacttagtttcaggtgaa Mask Tandem Repeat Region ================================================ ttcacctgaaactaagtttacttttgcttcacgtgtgaattttgcttcttgtgctactggttttggagtgccatcttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttactgtttktttaratctttttcttccaagccagctgggtatttaggtccgtctggattgtttggatcaacaggtgtccctggtggttttgggtgatctggtgtactggtacacacggtctttaagtgtactgtgaactctgtcagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtggaagggggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcgga Find is-nt database================================================ Query_seq: SMT_2043:SMT_2044|SMT_2043:SMT_2044:putative mucus binding protein:transcriptional activator TipA, putative:<-<-:1954859..1955363 505 ttcacctgaaactaagtttacttttgcttcacgtgtgaattttgcttcttgtgctactggttttggagtgccatcttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttactgtttktttaratctttttcttccaagccagctgggtatttaggtccgtctggattgtttggatcaacaggtgtccctggtggttttgggtgatctggtgtactggtacacacggtctttaagtgtactgtgaactctgtcagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtggaagggggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2043:SMT_2044|SMT_2043:SMT_2044:putative mucus binding protein:transcriptional activator TipA, putative:<-<-:1954859..1955363 505 ttcacctgaaactaagtttacttttgcttcacgtgtgaattttgcttcttgtgctactggttttggagtgccatcttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttactgtttktttaratctttttcttccaagccagctgggtatttaggtccgtctggattgtttggatcaacaggtgtccctggtggttttgggtgatctggtgtactggtacacacggtctttaagtgtactgtgaactctgtcagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtggaagggggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2043:SMT_2044|SMT_2043:SMT_2044:putative mucus binding protein:transcriptional activator TipA, putative:<-<-:1954859..1955363 505 ttcacctgaaactaagtttacttttgcttcacgtgtgaattttgcttcttgtgctactggttttggagtgccatcttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttactgtttktttaratctttttcttccaagccagctgggtatttaggtccgtctggattgtttggatcaacaggtgtccctggtggttttgggtgatctggtgtactggtacacacggtctttaagtgtactgtgaactctgtcagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgtggaagggggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 1 Max: 503 Len: 503 Subject: UniRef90_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia spumigena CCY9414|Rep: Beta-D-galactosidase - Nodularia spumigena CCY9414 HSP 1 e-value: 2.0E-12 bit: 73.9 Len: 111 Query Start:393 Query End:503 Subject Strand: null Subject Start: 36 Subject End: 72 ........................................................................................................................................................................................................................................................................................................................................................................................................ R P R L R G T E L E F W R N S E E A R T D R P L P Q L R S L N G E W R L M .. ........................................................................................................................................................................................................................................................................................................................................................................................................ R P R L T G T E L E F W R N S E E A R T D R P S Q Q L R S L N G E W R L M .. Subject: UniRef90_Q88WI9 Cluster: Cell surface protein; n=1; Lactobacillus plantarum|Rep: Cell surface protein - Lactobacillus plantarum HSP 1 e-value: 2.0E-7 bit: 57.8 Len: 135 Query Start:129 Query End:263 Subject Strand: null Subject Start: 1557 Subject End: 1602 ................................................................................................................................ F T V H L K - T V C T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q .................................................................................................................................................................................................................................................. ................................................................................................................................ Y T V T L K H K L V T V T P E N P G T P G Q P I D P D N P D G P K Y P V G T T A Q D L T K Q .................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-7 bit: 56.6 Len: 135 Query Start:129 Query End:263 Subject Strand: null Subject Start: 1764 Subject End: 1809 ................................................................................................................................ F T V H L K - T V C T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q .................................................................................................................................................................................................................................................. ................................................................................................................................ Y T V T L K H K L V T V T P G N P G T P G Q P I D P D N P D G P K Y P V G T T A Q D L T K Q .................................................................................................................................................................................................................................................. HSP 3 e-value: 8.0E-6 bit: 52.0 Len: 108 Query Start:129 Query End:236 Subject Strand: null Subject Start: 944 Subject End: 979 ................................................................................................................................ T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q ............................................................................................................................................................................................................................................................................. ................................................................................................................................ T R T P D N P G T P G E P I D P D N P N G P T Y P V G T D F E D L T E Q ............................................................................................................................................................................................................................................................................. HSP 4 e-value: 8.0E-6 bit: 52.0 Len: 108 Query Start:129 Query End:236 Subject Strand: null Subject Start: 1152 Subject End: 1187 ................................................................................................................................ T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q ............................................................................................................................................................................................................................................................................. ................................................................................................................................ T R T P D N P G T P G E P I D P D N P N G P T Y P V G T D F E D L T E Q ............................................................................................................................................................................................................................................................................. Subject: UniRef90_Q6QI34 Cluster: LRRGT00174; n=1; Rattus norvegicus|Rep: LRRGT00174 - Rattus norvegicus (Rat) HSP 1 e-value: 6.0E-7 bit: 55.8 Len: 117 Query Start:369 Query End:485 Subject Strand: null Subject Start: 315 Subject End: 353 ................................................................................................................................................................................................................................................................................................................................................................................ Q M R K E K I P H Q A P F A I Q A A Q L W K G A I G A G L F A I T P E F E L G .................... ................................................................................................................................................................................................................................................................................................................................................................................ Q M R K E K I T H Q A P F A I Q D A H M L G R A I G A G L F A I T P A G E R G .................... Subject: UniRef90_Q5FJA7 Cluster: Mucus binding protein Mub; n=1; Lactobacillus acidophilus|Rep: Mucus binding protein Mub - Lactobacillus acidophilus HSP 1 e-value: 8.0E-7 bit: 53.9 Len: 99 Query Start:138 Query End:236 Subject Strand: null Subject Start: 4052 Subject End: 4084 ......................................................................................................................................... T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L ............................................................................................................................................................................................................................................................................. ......................................................................................................................................... T V T P D K P G K P G D P I D P N N P D G P K Y P E G T G E N N L ............................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-7 bit: 21.2 Len: 75 Query Start:1 Query End:75 Subject Strand: null Subject Start: 4099 Subject End: 4123 D G T P K P V A Q E A K F T R E A K V N L V S G E .............................................................................................................................................................................................................................................................................................................................................................................................................................................. D K T P K D N T Q S F E F T K Q I T F D N V T G K .............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1UB70 Cluster: Hypothetical protein precursor; n=1; Lactobacillus reuteri 100-23|Rep: Hypothetical protein precursor - Lactobacillus reuteri 100-23 HSP 1 e-value: 6.0E-6 bit: 50.4 Len: 138 Query Start:132 Query End:269 Subject Strand: null Subject Start: 2307 Subject End: 2353 ................................................................................................................................... T E F T V H L K T - V C T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K ............................................................................................................................................................................................................................................ ................................................................................................................................... T T V T I H V K H G T V P V T P D N P G T P D K P I N P N D P D G P K Y P S G T D K A S I D K ............................................................................................................................................................................................................................................ HSP 2 e-value: 6.0E-6 bit: 21.6 Len: 69 Query Start:1 Query End:69 Subject Strand: null Subject Start: 2368 Subject End: 2390 T P K P V A Q E A K F T R E A K V N L V S G E .................................................................................................................................................................................................................................................................................................................................................................................................................................................... T P N D V Q Q P V H F T A R G E L D K V T G E .................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q03T21 Cluster: Possible cell surface protein; n=1; Lactobacillus brevis ATCC 367|Rep: Possible cell surface protein - Lactobacillus brevis (strain ATCC 367 / JCM 1170) HSP 1 e-value: 6.0E-6 bit: 52.4 Len: 135 Query Start:129 Query End:263 Subject Strand: null Subject Start: 1086 Subject End: 1131 ................................................................................................................................ F T V H L K - T V C T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q .................................................................................................................................................................................................................................................. ................................................................................................................................ Y T V T L K H K F I T V T P D N P G V A G D P I N P D N P D G P K Y P N G T A A K D L S K K .................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 52.0 Len: 108 Query Start:129 Query End:236 Subject Strand: null Subject Start: 888 Subject End: 923 ................................................................................................................................ T S T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q ............................................................................................................................................................................................................................................................................. ................................................................................................................................ T R T P D N P G T P G E P I D P D N P N G P T Y P V G T D F E D L T E Q ............................................................................................................................................................................................................................................................................. Subject: UniRef90_Q5FKA6 Cluster: Putative mucus binding protein; n=1; Lactobacillus acidophilus|Rep: Putative mucus binding protein - Lactobacillus acidophilus HSP 1 e-value: 8.0E-6 bit: 52.0 Len: 132 Query Start:129 Query End:260 Subject Strand: null Subject Start: 1926 Subject End: 1970 ................................................................................................................................ T V H L K T V C T S - T P D H P K P P G T P V D P N N P D G P K Y P A G L E E K D L X K Q ..................................................................................................................................................................................................................................................... ................................................................................................................................ T V H M K H G T T T I T P D Q P G K P G E P I N P N D P N G P K W P S D T D T K G L T K Q ..................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnga Predict ORF larger than 30AA ================================================ Protein_Len: 45 Strand: + Start: 35 End: 169 .................................. M N F A S C A T G F G V P S S L N T G V P S S Y T Y V I V R V T V X L X L F L P S Q L G I ................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: + Start: 97 End: 219 ................................................................................................ M F V Y V C D C T C Y C X F X S F S S K P A G Y L G P S G L F G S T G V P G G F G .............................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 141 End: 248 ............................................................................................................................................ M F F F Q A S W V F R S V W I V W I N R C P W W F W V I W C T G T H G L ................................................................................................................................................................................................................................................................. Protein_Len: 49 Strand: + Start: 357 End: 503 .................................................................................................................................................................................................................................................................................................................................................................... M X X X Q M R K E K I P H Q A P F A I Q A A Q L W K G A I G A G L F A I T P E F E L G T P E S R S .. Protein_Len: 37 Strand: + Start: 394 End: 504 ......................................................................................................................................................................................................................................................................................................................................................................................................... M R R H S P F R L R N C G R G R S V R A S S L L R Q N S S S V P L S L G R . Protein_Len: 53 Strand: - Start: 196 End: 354 ................................................................................................................................................................................................... C T D R T T K P S R T Y Q Y V R D K L T S H V R D T R S K D L R M Q P Y S L V S M D Q Q A R I E V X X X M ....................................................................................................................................................... Protein_Len: 60 Strand: - Start: 129 End: 314 ................................................................................................................................ X X D K E E L G A P Y K P G D P N N P D V P T G P P K P H D P T S T C V T K L H V T F E T L A V R I L V C R H I H Y F M ............................................................................................................................................................................................... Protein_Len: 56 Strand: - Start: 1 End: 168 E G S V L N V K A E R T F K A E Q A V P K P T G D E S L V P T G D E Y V Y T I T R T V T X K X R K R G L W S P M ................................................................................................................................................................................................................................................................................................................................................. nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -3.1 Tail_Score: -3.67112 Start: 300 End: 321 Full_Region: CAAGACGCATCTGTG GATATGA TAGAACAC TCATATC TTGTTGAGCTCTGAT ...........................................................................................................................................................................................................................................................................................................GATATGATAGAACACTCATATC........................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_2043:SMT_2044|SMT_2043:SMT_2044:putative mucus binding protein:transcriptional activator TipA, putative:<-<-:1954859..1955363 505 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaannnnncannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnga Intra-Species Hit: Count: 1 Min: 76 Max: 361 Len: 286 Subject: smit_SMT_2043_SMT_2044|putative mucus binding protein:transcriptional activator TipA, putative|NEGATIVE:NEGATIVE|[1954859,1955363]|505 HSP 1 e-value: 7.0E-36 bit: 153.0 Len: 92 Query Start:270 Query End:361 Subject Strand: POSITIVE Subject Start: 270 Subject End: 361 .............................................................................................................................................................................................................................................................................cagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaa................................................................................................................................................ .............................................................................................................................................................................................................................................................................cagtgcgactcttatcaagacgcatctgtggatatgatagaacactcatatcttgttgagctctgatctccacgannnnnttaattaattaa................................................................................................................................................ HSP 2 e-value: 1.0E-21 bit: 105.0 Len: 53 Query Start:76 Query End:128 Subject Strand: POSITIVE Subject Start: 76 Subject End: 128 ...........................................................................ttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgtta......................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................ttcgcttaatactggagtgccatcttcgtatacgtatgtgattgtacgtgtta......................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCGCUUAAUACUGGAGUGCCAUCUUCGUAUACGUAUGUGAUUGUACGUGUUACUGUUUKUUUARAUCUUUUUCUUCCAAGCCAGCUGGGUAUUUAGGUCCGUCUGGAUUGUUUGGAUCAACAGGUGUCCCUGGUGGUUUUGGGUGAUCUGGUGUACUGGUACACACGGUCUUUAAGUGUACUGUGAACUCUGUCAGUGCGACUCUUAUCAAGACGCAUCUGUGGAUAUGAUAGAACACUCAUAUCUUGUUGAGCUCUGAUCUCCACGANNNNNUUAAUUAAUUAA ............(((((..........((((((((((......))))))).))).....................((..(((((((.((((((..(((.(((...((((..((..(((((.((((....)))).))).))..))..)))).(((((....))))).))).)))..(((((.((((.(..((((.(((((((..(((.....))))))).)))))))..).)))).))))).)))))).)))).)))..)).))))).................... (-72.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAUUAAUUAANNNNNUCGUGGAGAUCAGAGCUCAACAAGAUAUGAGUGUUCUAUCAUAUCCACAGAUGCGUCUUGAUAAGAGUCGCACUGACAGAGUUCACAGUACACUUAAAGACCGUGUGUACCAGUACACCAGAUCACCCAAAACCACCAGGGACACCUGUUGAUCCAAACAAUCCAGACGGACCUAAAUACCCAGCUGGCUUGGAAGAAAAAGAUYUAAAMAAACAGUAACACGUACAAUCACAUACGUAUACGAAGAUGGCACUCCAGUAUUAAGCGAA ....................(((((....((((((.....(((((((........)))))))..(((.((((.(((.....))).)))))))...))))))...((...(((......(((((((....((((.................((.((((....)))).)).(((((.....((((..((..........))..)))).)))))............................))))....)))))))......)))...)).)))))............ (-65.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 903 50 1 216 167 smit:SMT_2043|5end_putative_mucus_binding_protein_1954768..1954998_NEGATIVE 361 119 72 65 19 smit:SMT_1078|5end_folylpolyglutamate_synthase_1016713..1016943_NEGATIVE 353 120 71 81 24 smit:SMT_1806|5end_aminoacylase/N-acyl-L-amino_acid_amidohydrolase/hippurate_hydrolase_1781229..1781459_POSITIVE 353 120 71 81 24 smit:SMT_1635|5end_putative_N-acetyldiaminopimelate_deacetylase_1621426..1621656_POSITIVE 339 126 86 173 130 smit:SMT_1561|5end_putative_mucus_binding_protein_1553809..1554039_NEGATIVE 322 162 127 166 127 smit:SMT_1662|5end_histidine_protein_kinase_1652357..1652587_NEGATIVE 317 109 67 167 115 smit:SMT_1406|5end_chloride_channel_protein_1385513..1385743_NEGATIVE 315 145 102 225 158 smit:SMT_1631|5end_phosphopantothenoylcysteine_synthase/decarboxylase_1618359..1618589_NEGATIVE 315 120 73 206 161 smit:SMT_811|5end_ATP-dependent_RNA_helicase_721025..721255_POSITIVE 311 127 87 43 1 smit:SMT_1611|5end_K05896_segregation_and_condensation_protein_A_1599305..1599535_POSITIVE 311 127 87 43 1 smit:SMT_1034|5end_K05896_segregation_and_condensation_protein_A_977307..977537_NEGATIVE 307 205 167 191 143 smit:SMT_961|5end_K02016_iron_complex_transport_system_substrate-binding_protein_907809..908039_NEGATIVE 304 128 81 125 72 smit:SMT_763|5end_alpha-amylase_667866..668096_POSITIVE 304 150 101 71 7 smit:SMT_714|5end_hypothetical_protein_predicted_by_Glimmer/Critica_620979..621209_NEGATIVE 304 150 101 162 98 smit:SMT_713|5end_heat_shock_protein_HtpX_620888..621118_NEGATIVE 304 150 101 162 98 smit:SMT_695|5end_heat_shock_protein_HtpX_606883..607113_NEGATIVE 304 199 153 166 115 smit:SMT_183|5end_30S_ribosomal_protein_S14_121014..121244_POSITIVE 302 170 121 195 140 smit:SMT_1750|5end_anthranilate_phosphoribosyltransferase_1728011..1728241_POSITIVE 302 158 116 41 4 smit:SMT_866|5end_50S_ribosomal_protein_L11_816234..816464_NEGATIVE 301 160 111 135 92 smit:SMT_2122|5end_cell_surface_protein_precursor_2008116..2008346_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 655 113 72 151 114 smit:SMT_2043|3end_putative_mucus_binding_protein_1954013..1954163_NEGATIVE 361 119 72 63 17 smit:SMT_1079|3end_dihydropteroate_synthase_1016715..1016865_NEGATIVE 345 53 13 139 92 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 339 169 123 57 10 smit:SMT_2049|3end_3-oxoacyl-_1958736..1958886_NEGATIVE 332 169 121 51 14 smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE 330 129 82 138 99 smit:SMT_1264|3end_oligoendopeptidase_F_1230734..1230884_POSITIVE 325 120 77 109 66 smit:SMT_982|3end_D-tyrosyl-tRNA(Tyr)_deacylase_929211..929361_NEGATIVE 317 109 67 150 98 smit:SMT_1407|3end_ribonuclease_HII_1385530..1385680_NEGATIVE 311 127 87 43 1 smit:SMT_1610|3end_tyrosine_recombinase_1599385..1599535_POSITIVE 305 130 82 64 13 smit:SMT_2070|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1975627..1975777_POSITIVE 304 199 153 148 97 smit:SMT_182|3end_50S_ribosomal_protein_L5_121076..121226_POSITIVE 291 160 124 141 101 smit:SMT_298|3end_penicillin-binding_protein_1A_240719..240869_NEGATIVE 288 224 182 133 99 smit:SMT_340|3end_chaperone_protein_280566..280716_POSITIVE 287 107 66 57 1 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 283 150 101 131 83 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 280 116 77 149 112 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 280 119 80 77 37 smit:SMT_1744|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1725196..1725346_NEGATIVE 277 118 75 90 52 smit:SMT_700|3end_putative_signal_recognition_particle_-inhibited_division_protein_610330..610480_NEGATIVE 276 58 11 101 57 smit:SMT_1972|3end_uncharacterized_conserved_phage_related_protein_1904440..1904590_POSITIVE 276 126 81 150 98 smit:SMT_1323|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1293772..1293922_POSITIVE