Origin IGS:
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgcctttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
ttagatgatatttatcgatttgtagaggaaattagcgagactttcaagtatcgatgtcttgtttaacacgcnnnnnttaattaattaannnnnagcttgtctgtaagcggatgccgggagcagacaagcccgtcagggcgcgtcagcgggtgttggcgggtgtcggggctggcttaactatgcggcatcagagcagattgtactgagagtgcaccatatgcggtgtgaaataccgcacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcaggctgcgcaactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagaattcgagctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaaggcatatcgcgtcatcttataccaatttacctaagaaactttccccaatc

Mask Tandem Repeat Region ================================================
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgcctttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa

Find is-nt database================================================
Query_seq: SMT_2030:SMT_2031|SMT_2030:SMT_2031:chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica:<-<-:1945258..1945722 465
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgcctttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: SMT_2030:SMT_2031|SMT_2030:SMT_2031:chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica:<-<-:1945258..1945722 465
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgcctttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: SMT_2030:SMT_2031|SMT_2030:SMT_2031:chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica:<-<-:1945258..1945722 465
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgcctttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctggcgtaatagcgaagaggcccgcaccgatcgcccttcccaacagttgcgcagcctgaatggcgaatggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 5	Min: 49	Max: 369	Len: 321
Subject: UniRef90_Q6QI34 Cluster: LRRGT00174; n=1; Rattus norvegicus|Rep: LRRGT00174 - Rattus norvegicus (Rat)
HSP  1	e-value: 2.0E-28	bit: 127.0	Len: 258	Query Start:112	Query End:369	Subject Strand: null	Subject Start: 268	Subject End: 353
............................................................................................................... L  S  V  S  G  C  R  E  Q  T  S  P  S  G  R  V  S  G  C  W  R  V  S  G  L  A  *  L  C  G  I  R  A  D  C  T  E  S  A  P  Y  A  V  *  N  T  A  Q  M  R  K  E  K  I  P  H  Q  A  P  F  A  I  Q  A  A  Q  L  L  G  R  A  I  G  A  G  L  F  A  I  T  P  E  F  E  L  G ................................................................................................
............................................................................................................... L  S  V  S  G  C  R  E  Q  T  S  P  S  G  R  V  I  G  C  W  R  V  S  G  L  A  Y  T  M  R  H  Q  S  R  L  Y  E  S  A  P  Y  A  V  C  N  T  A  Q  M  R  K  E  K  I  T  H  Q  A  P  F  A  I  Q  D  A  H  M  L  G  R  A  I  G  A  G  L  F  A  I  T  P  A  G  E  R  G ................................................................................................

Subject: UniRef90_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia spumigena CCY9414|Rep: Beta-D-galactosidase - Nodularia spumigena CCY9414
HSP  1	e-value: 1.0E-22	bit: 107.0	Len: 156	Query Start:49	Query End:204	Subject Strand: null	Subject Start: 21	Subject End: 72
................................................ P  F  Q  H  T  G  L  A  V  V  L  Q  G  L  V  R  P  R  L  R  G  T  E  L  E  F  W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  L  M .....................................................................................................................................................................................................................................................................
................................................ P  F  Q  H  T  G  L  A  V  V  L  Q  G  L  V  R  P  R  L  T  G  T  E  L  E  F  W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  L  M .....................................................................................................................................................................................................................................................................

Subject: UniRef90_UPI0000ECAFAB Cluster: UPI0000ECAFAB related cluster; n=1; Gallus gallus|Rep: UPI0000ECAFAB UniRef100 entry - Gallus gallus
HSP  1	e-value: 5.0E-12	bit: 55.5	Len: 81	Query Start:183	Query End:263	Subject Strand: null	Subject Start: 50	Subject End: 76
...................................................................................................................................................................................... E  W  R  M  A  P  D  A  V  F  S  P  Y  A  S  V  R  Y  F  T  P  H  M  V  H  S  Q ..........................................................................................................................................................................................................
...................................................................................................................................................................................... E  W  R  M  A  P  D  A  V  F  S  P  Y  A  S  V  R  Y  F  T  P  H  M  G  S  N  Q ..........................................................................................................................................................................................................
HSP  2	e-value: 5.0E-12	bit: 34.7	Len: 63	Query Start:139	Query End:201	Subject Strand: null	Subject Start: 36	Subject End: 53
.......................................................................................................................................... E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  L ........................................................................................................................................................................................................................................................................
.......................................................................................................................................... E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  -  -  -  E  W  R  M ........................................................................................................................................................................................................................................................................
HSP  3	e-value: 5.0E-12	bit: 21.9	Len: 30	Query Start:59	Query End:88	Subject Strand: null	Subject Start: 1	Subject End: 10
.......................................................... T  L  D  W  P  S  F  Y  K  V .........................................................................................................................................................................................................................................................................................................................................................................................
.......................................................... T  I  H  W  P  S  F  Y  N  V .........................................................................................................................................................................................................................................................................................................................................................................................

Subject: UniRef90_O21999 Cluster: LacZ-alpha; n=1; Cloning vector pAL-Z|Rep: LacZ-alpha - Cloning vector pAL-Z
HSP  1	e-value: 4.0E-8	bit: 59.3	Len: 105	Query Start:127	Query End:231	Subject Strand: null	Subject Start: 70	Subject End: 106
.............................................................................................................................. W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  -  -  L  M  R  Y  F  L  L  T  H  L  C ..........................................................................................................................................................................................................................................
.............................................................................................................................. W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  D  K  L  A  L  Y  A  L  M  Q  F  L  C ..........................................................................................................................................................................................................................................

Subject: UniRef90_Q8GEG0 Cluster: Hypothetical protein; n=1; Erwinia amylovora|Rep: Hypothetical protein - Erwinia amylovora (Fire blight bacteria)
HSP  1	e-value: 1.0E-6	bit: 54.7	Len: 135	Query Start:64	Query End:198	Subject Strand: null	Subject Start: 67	Subject End: 120
............................................................... G  L  A  V  V  L  Q  -  -  -  -  -  -  -  G  L  V  R  P  R  L  R  G  T  E  L  E  F  -  -  W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R ...........................................................................................................................................................................................................................................................................
............................................................... G  L  A  V  V  L  Q  R  R  D  W  E  N  P  G  V  T  Q  L  N  R  L  A  A  H  P  P  F  A  S  W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  X  L  N  G  E  W  R ...........................................................................................................................................................................................................................................................................


gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Predict ORF larger than 30AA ================================================
Protein_Len: 60	Strand: +	Start: 46	End: 285
............................................. M  P  F  Q  H  T  G  L  A  V  V  L  Q  G  L  V  R  P  R  L  R  G  T  E  L  E  F  W  R  N  S  E  E  A  R  T  D  R  P  S  Q  Q  L  R  S  L  N  G  E  W  R  L  M  R  Y  F  L  L  T  H ....................................................................................................................................................................................
Protein_Len: 40	Strand: -	Start: 263	End: 382
...................................................................................................................................................................................................................................................................... Y  L  R  S  Q  H  R  M  T  L  G  A  G  V  G  A  L  V  R  Q  R  A  R  V  P  K  D  A  G  P  M  R  K  C  V  L  X  X  X  M ...................................................................................
Protein_Len: 45	Strand: -	Start: 91	End: 225
.......................................................................................... D  S  R  S  E  P  T  G  L  E  F  E  P  T  I  A  F  L  G  A  G  I  A  R  G  L  L  Q  A  A  Q  I  A  F  P  A  Q  H  P  I  K  E  K  R  M ................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 3	End: 269
.. T  R  G  L  S  L  P  V  S  S  S  N  Q  R  L  L  S  S  A  R  V  S  R  G  E  W  C  N  R  L  R  F  P  S  H  R  R  I  R  Y  K  R  R  V  C  R  H  P  I  E  C  R  M  H  H  V  R  L  V  M ....................................................................................................................................................................................................

gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 81	Start: 418	End: 447
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAGTCTCGCTAATTTCCTCTACAAA..................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: SMT_2030:SMT_2031|SMT_2030:SMT_2031:chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica:<-<-:1945258..1945722 465
gattggggaaagtttcttaggtaaattggtataagatgacgcgatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctnnnnnttaattaattaannnnngcgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
Intra-Species Hit: Count: 1	Min: 1	Max: 465	Len: 465
Subject: smit_SMT_2030_SMT_2031|chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1945258,1945722]|465
HSP  1	e-value: 1.0E-31	bit: 139.0	Len: 70	Query Start:396	Query End:465	Subject Strand: POSITIVE	Subject Start: 396	Subject End: 465
...........................................................................................................................................................................................................................................................................................................................................................................................................cgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
...........................................................................................................................................................................................................................................................................................................................................................................................................cgtgttaaacaagacatcgatacttgaaagtctcgctaatttcctctacaaatcgataaatatcatctaa
HSP  2	e-value: 5.0E-18	bit: 93.7	Len: 47	Query Start:1	Query End:47	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 47
gattggggaaagtttcttaggtaaattggtataagatgacgcgatat..................................................................................................................................................................................................................................................................................................................................................................................................................................
gattggggaaagtttcttaggtaaattggtataagatgacgcgatat..................................................................................................................................................................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GAUUGGGGAAAGUUUCUUAGGUAAAUUGGUAUAAGAUGACGCGAUAUGCCUUUCCAGCACACUGGACUGGCCGUCGUUUUACAAGGUCUAGUCCGACCUAGACUCAGGGGUACCGAGCUCGAAUUCUGGCGUAAUAGCGAAGAGGCCCGCACCGAUCGCCCUUCCCAACAGUUGCGCAGCCUGAAUGGCGAAUGGCGCCUGAUGCGGUAUUUUCUCCUUACGCAUCUGUGCGGUAUUUCACACCGCAUAUGGUGCACUCUCAGUACAAUCUGCUCUGAUGCCGCAUAGUUAAGCCAGCCCCGACACCCGCCAACACCCGCUGACGCGCCCUGACGGGCUUGUCUGCUCCCGGCAUCCGCUUACAGACAAGCUNNNNNUUAAUUAAUUAANNNNNGCGUGUUAAACAAGACAUCGAUACUUGAAAGUCUCGCUAAUUUCCUCUACAAAUCGAUAAAUAUCAUCUAA
(((((((((((...((((.(((...(((((.((((((((((......(((..(((((....)))))..)))))))))))))...(((((((......)))))))..((((...((....))....(((((.((((.(.((((.(((...........))))))).)..(((..((((.(((.....))).....))))))).(((((((((..........(((((((((((((.......)))))))).))))).....(((......)))....)))))))))..)))).))))))))).......))))).)))...((((((((((....))(((((((((....(((...)))....))))))))).......................))))))))...))))...(((.(((....))).)))....)))))))....))))................ (-143.20)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UUAGAUGAUAUUUAUCGAUUUGUAGAGGAAAUUAGCGAGACUUUCAAGUAUCGAUGUCUUGUUUAACACGCNNNNNUUAAUUAAUUAANNNNNAGCUUGUCUGUAAGCGGAUGCCGGGAGCAGACAAGCCCGUCAGGGCGCGUCAGCGGGUGUUGGCGGGUGUCGGGGCUGGCUUAACUAUGCGGCAUCAGAGCAGAUUGUACUGAGAGUGCACCAUAUGCGGUGUGAAAUACCGCACAGAUGCGUAAGGAGAAAAUACCGCAUCAGGCGCCAUUCGCCAUUCAGGCUGCGCAACUGUUGGGAAGGGCGAUCGGUGCGGGCCUCUUCGCUAUUACGCCAGAAUUCGAGCUCGGUACCCCUGAGUCUAGGUCGGACUAGACCUUGUAAAACGACGGCCAGUCCAGUGUGCUGGAAAGGCAUAUCGCGUCAUCUUAUACCAAUUUACCUAAGAAACUUUCCCCAAUC
...(((((...)))))........(.(((((...(((((((((....(((((((.(.((((.(..((((.........................((((((((((...(((...)))...))))))))))(((((((.((.((....)).)).)))))))))))..)..(((((.......((((.((((.........(((((.....))))).....((((((((...))))))))..)))))))).(((((.....(((((((...((((.(((.(((..(((.........))).)))))).))))...)))))))...)))))........)))))....))))))))))))....))))).(((((......)))))............(((..(((((....)))))..)))...))))....(((((............)))))...))))).).... (-152.90)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1179	190	141	221	172	smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE
1179	190	141	221	172	smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE
1113	160	111	230	181	smit:SMT_1966|5end_DNA_polymerase_III_alpha_subunit_1897934..1898164_POSITIVE
1113	160	111	231	182	smit:SMT_1926|5end_mevalonate_kinase_1867692..1867922_POSITIVE
1113	160	111	212	163	smit:SMT_1885|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1840057..1840287_NEGATIVE
1091	210	161	53	4	smit:SMT_1981|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912261..1912491_POSITIVE
1064	140	91	231	182	smit:SMT_2030|5end_chromosomal_replication_initiator_protein_DnaA_1945167..1945397_NEGATIVE
1062	130	81	229	180	smit:SMT_1672|5end_hypothetical_protein_1660051..1660281_NEGATIVE
1055	110	61	224	175	smit:SMT_1927|5end_cell_division_protein_FtsH_1868779..1869009_NEGATIVE
1055	110	61	227	178	smit:SMT_1873|5end_K02006_cobalt_transport_system_ATP-binding_protein_1831936..1832166_POSITIVE
1000	99	51	231	183	smit:SMT_714|5end_hypothetical_protein_predicted_by_Glimmer/Critica_620979..621209_NEGATIVE
954	110	61	153	105	smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE
877	95	51	124	80	smit:SMT_1977|5end_endopeptidase_O_1907832..1908062_POSITIVE
829	86	42	115	72	smit:SMT_1928|5end_O-methyltransferase_family_protein_1869652..1869882_NEGATIVE
548	358	317	208	160	smit:SMT_794|5end_hypothetical_protein_703487..703717_NEGATIVE
502	71	37	202	168	smit:SMT_303|5end_hypothetical_protein_245364..245594_POSITIVE
488	317	272	73	28	smit:SMT_1606|5end_glutamate_racemase_1595857..1596087_POSITIVE
479	358	316	104	52	smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE
455	72	42	231	201	smit:SMT_1971|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1903282..1903512_POSITIVE
452	368	322	170	114	smit:SMT_1897|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1848858..1849088_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1156	320	271	85	36	smit:SMT_1557|3end_hypothetical_protein_1543650..1543800_POSITIVE
1155	370	321	52	3	smit:SMT_1946|3end_sucrose-6-phosphate_hydrolase_1881205..1881355_POSITIVE
1139	200	151	51	2	smit:SMT_1954|3end_6-phospho-beta-glucosidase_1888831..1888981_POSITIVE
1130	340	291	72	23	smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE
1087	310	261	67	18	smit:SMT_1925|3end_K03697_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpE_1867458..1867608_POSITIVE
1055	110	61	61	12	smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE
1017	220	172	49	1	smit:SMT_1970|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903032..1903182_POSITIVE
1000	99	51	81	33	smit:SMT_955|3end_acyltransferase_family_protein_904703..904853_POSITIVE
991	270	221	72	23	smit:SMT_2023|3end_tryptophan_synthase,_alpha_subunit_1939997..1940147_POSITIVE
991	270	221	59	10	smit:SMT_1674|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1660361..1660511_NEGATIVE
960	260	213	48	1	smit:SMT_2015|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1932839..1932989_POSITIVE
929	285	241	52	8	smit:SMT_1965|3end_hypothetical_protein_1897711..1897861_POSITIVE
927	305	261	48	4	smit:SMT_2003|3end_serine_protease_1924693..1924843_NEGATIVE
829	86	42	77	34	smit:SMT_1929|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1869690..1869840_NEGATIVE
657	261	228	34	1	smit:SMT_2007|3end_hypothetical_protein_1928147..1928297_POSITIVE
527	308	283	26	1	smit:SMT_1659|3end_K03497_chromosome_partitioning_protein,_ParB_family_1649189..1649339_NEGATIVE
502	71	37	77	43	smit:SMT_302|3end_K07444_putative_N6-adenine-specific_DNA_methylase_245319..245469_POSITIVE
452	368	322	151	95	smit:SMT_1898|3end_aminotransferase_(class_V),_putative_1848877..1849027_NEGATIVE
416	181	143	68	15	smit:SMT_147|3end_K02027_multiple_sugar_transport_system_substrate-binding_protein_98016..98166_POSITIVE
415	336	292	70	9	smit:SMT_677|3end_DNA_topoisomerase_I_585303..585453_NEGATIVE