Origin IGS: aagcaaacagccttgaaatcaatcttgactgcgatgatgaacctgaatcagcccctcaaaagggactgtatatgaatgaacgttaccagtgtttaaaaattaaagaatatcaggcacttttatcttccaagggtagataaattttcgctaaacgtaagattgatatgaaatctgtctttgggcagataaaggtttgtttggttataagagatgtcatctgaaaggtaagcgccaagtgagaattgacatgggattcgtactcatggtcaacaacctgctgaaatataataagagaaagaggcaaaacttccagcnnnnnttaattaattaannnnnagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttgtggataacttttactttattatcttttttctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctnnnnnttaattaattaannnnngctggaagttttgcctctttctcttattatatttcagcaggttgttgaccatgagtacgaatcccatgtcaattctcacttggcgcttacctttcagatgacatctcttataaccaaacaaacctttatctgcccaaagacagatttcatatcaatcttacgtttagcgaaaatttatctacccttggaagataaaagtgcctgatattctttaatttttaaacactggtaacgttcattcatatacagtcccttttgaggggctgattcaggttcatcatcgcagtcaagattgatttcaaggctgtttgctt Mask Tandem Repeat Region ================================================ aagcaaacagccttgaaatcaatcttgactgcgatgatgaacctgaatcagcccctcaaaagggactgtatatgaatgaacgttaccagtgtttaaaaattaaagaatatcaggcacttttatcttccaagggtagataaattttcgctaaacgtaagattgatatgaaatctgtctttgggcagataaaggtttgtttggttataagagatgtcatctgaaaggtaagcgccaagtgagaattgacatgggattcgtactcatggtcaacaacctgctgaaatataataagagaaagaggcaaaacttccagcnnnnnttaattaattaannnnnagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Find is-nt database================================================ Query_seq: SMT_2029:SMT_2030|SMT_2029:SMT_2030:acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA:-><-:1944345..1944879 535 aagcaaacagccttgaaatcaatcttgactgcgatgatgaacctgaatcagcccctcaaaagggactgtatatgaatgaacgttaccagtgtttaaaaattaaagaatatcaggcacttttatcttccaagggtagataaattttcgctaaacgtaagattgatatgaaatctgtctttgggcagataaaggtttgtttggttataagagatgtcatctgaaaggtaagcgccaagtgagaattgacatgggattcgtactcatggtcaacaacctgctgaaatataataagagaaagaggcaaaacttccagcnnnnnttaattaattaannnnnagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2029:SMT_2030|SMT_2029:SMT_2030:acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA:-><-:1944345..1944879 535 aagcaaacagccttgaaatcaatcttgactgcgatgatgaacctgaatcagcccctcaaaagggactgtatatgaatgaacgttaccagtgtttaaaaattaaagaatatcaggcacttttatcttccaagggtagataaattttcgctaaacgtaagattgatatgaaatctgtctttgggcagataaaggtttgtttggttataagagatgtcatctgaaaggtaagcgccaagtgagaattgacatgggattcgtactcatggtcaacaacctgctgaaatataataagagaaagaggcaaaacttccagcnnnnnttaattaattaannnnnagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 13 Min: 6 Max: 400 Len: 395 Subject: gi|15613617|ref|NP_241920.1| transposase (08)/ABC transporter (ATP-binding protein) [Bacillus halodurans C-125] HSP 1 e-value: 5.0E-10 bit: 46.2 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P F K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: UniRef90_Q9KE04 Cluster: Transposase (08)/ABC transporter; n=7; Bacillus halodurans|Rep: Transposase (08)/ABC transporter - Bacillus halodurans HSP 1 e-value: 5.0E-10 bit: 46.2 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P F K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: IS|IS660.aa1 HSP 1 e-value: 5.0E-10 bit: 46.2 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P F K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: gi|15614633|ref|NP_242936.1| transposase (08) [Bacillus halodurans C-125] HSP 1 e-value: 6.0E-10 bit: 46.2 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P F K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: gi|15615404|ref|NP_243707.1| transposase (08) [Bacillus halodurans C-125] HSP 1 e-value: 6.0E-10 bit: 46.2 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P F K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: gi|15613990|ref|NP_242293.1| transposase (08) [Bacillus halodurans C-125] HSP 1 e-value: 7.0E-10 bit: 45.8 Len: 180 Query Start:30 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 500 ............................. C D D E P E S A P Q K G - - - L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................. C P L K P E C T K A R G N R Q V H Y N P V Y E E L K A K Q H Q K L K S E E G R T L Y Q K R K T D V E S V F G H V K Q N L G F R ...................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-10 bit: 34.3 Len: 84 Query Start:200 Query End:283 Subject Strand: null Subject Start: 498 Subject End: 525 ....................................................................................................................................................................................................... G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K ............................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................... G F R R L H L R G K E S V H I E L G L V A L A H N L R K ............................................................................................................................................................................................................................................................ Subject: gi|58336425|ref|YP_193010.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-9 bit: 41.2 Len: 213 Query Start:188 Query End:400 Subject Strand: null Subject Start: 486 Subject End: 548 ........................................................................................................................................................................................... K G L F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K R K R Q N F Q X X L I N * X X A R K R K S A Q Y A N R L S P R V G R F I ....................................................................................................................................... ........................................................................................................................................................................................... K N I F G I R R T H L R G K K K V E T D V G I A F I M M N L S K Y W N R R W S R V Q S S L C - - - - - - - - K I K K A V K Q L K S R V G L I V ....................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 37.7 Len: 165 Query Start:45 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 492 ............................................ E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................................ K S G R Q R Q V R Y N P N W Q Y L K E K A K E V L Q S P E G R H I Y S M R K Y D V E P I F G H L K N I F G I R ...................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q5FMU5 Cluster: Transposase; n=2; Lactobacillus acidophilus|Rep: Transposase - Lactobacillus acidophilus HSP 1 e-value: 2.0E-9 bit: 41.2 Len: 213 Query Start:188 Query End:400 Subject Strand: null Subject Start: 486 Subject End: 548 ........................................................................................................................................................................................... K G L F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K R K R Q N F Q X X L I N * X X A R K R K S A Q Y A N R L S P R V G R F I ....................................................................................................................................... ........................................................................................................................................................................................... K N I F G I R R T H L R G K K K V E T D V G I A F I M M N L S K Y W N R R W S R V Q S S L C - - - - - - - - K I K K A V K Q L K S R V G L I V ....................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 37.7 Len: 165 Query Start:45 Query End:209 Subject Strand: null Subject Start: 438 Subject End: 492 ............................................ E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ............................................ K S G R Q R Q V R Y N P N W Q Y L K E K A K E V L Q S P E G R H I Y S M R K Y D V E P I F G H L K N I F G I R ...................................................................................................................................................................................................................................................................................................................................... Subject: gi|89090960|ref|ZP_01163991.1| transposase [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 4.0E-7 bit: 35.4 Len: 186 Query Start:6 Query End:191 Subject Strand: null Subject Start: 424 Subject End: 485 ..... N S L E I N L D C D D E P E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K ........................................................................................................................................................................................................................................................................................................................................................ ..... H Q L S V K L D E L A K T P G G R Q R Y M K V N P T W N Y Y K A K V K D A L S S D E G K A I Y R R R K F D V E P V F G H M K ........................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-7 bit: 35.4 Len: 96 Query Start:197 Query End:292 Subject Strand: null Subject Start: 488 Subject End: 519 .................................................................................................................................................................................................... F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K ................................................................................................................................................................................................................................................... .................................................................................................................................................................................................... F G I R R T H L R G Q R A V E N D I G L A L M A L N L T K F G Q ................................................................................................................................................................................................................................................... Subject: UniRef90_Q2BTY8 Cluster: Transposase; n=5; Lactobacillus reuteri JCM 1112|Rep: Transposase - Lactobacillus reuteri JCM 1112 HSP 1 e-value: 4.0E-7 bit: 35.4 Len: 186 Query Start:6 Query End:191 Subject Strand: null Subject Start: 424 Subject End: 485 ..... N S L E I N L D C D D E P E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K ........................................................................................................................................................................................................................................................................................................................................................ ..... H Q L S V K L D E L A K T P G G R Q R Y M K V N P T W N Y Y K A K V K D A L S S D E G K A I Y R R R K F D V E P V F G H M K ........................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-7 bit: 35.4 Len: 96 Query Start:197 Query End:292 Subject Strand: null Subject Start: 488 Subject End: 519 .................................................................................................................................................................................................... F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K ................................................................................................................................................................................................................................................... .................................................................................................................................................................................................... F G I R R T H L R G Q R A V E N D I G L A L M A L N L T K F G Q ................................................................................................................................................................................................................................................... Subject: gi|89090610|ref|ZP_01163655.1| transposase [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 4.0E-7 bit: 35.4 Len: 186 Query Start:6 Query End:191 Subject Strand: null Subject Start: 107 Subject End: 168 ..... N S L E I N L D C D D E P E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K ........................................................................................................................................................................................................................................................................................................................................................ ..... H Q L S V K L D E L A K T P G G R Q R Y M K V N P T W N Y Y K A K V K D A L S S D E G K A I Y R R R K F D V E P V F G H M K ........................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-7 bit: 35.4 Len: 96 Query Start:197 Query End:292 Subject Strand: null Subject Start: 171 Subject End: 202 .................................................................................................................................................................................................... F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K ................................................................................................................................................................................................................................................... .................................................................................................................................................................................................... F G I R R T H L R G Q R A V E N D I G L A L M A L N L T K F G Q ................................................................................................................................................................................................................................................... Subject: UniRef90_Q706F4 Cluster: Putative transposase 11; n=1; Streptococcus mitis|Rep: Putative transposase 11 - Streptococcus mitis HSP 1 e-value: 2.0E-6 bit: 36.2 Len: 105 Query Start:188 Query End:292 Subject Strand: null Subject Start: 25 Subject End: 59 ........................................................................................................................................................................................... K G L F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K ................................................................................................................................................................................................................................................... ........................................................................................................................................................................................... K S V F G V R R V H V R G K Q A V S T E I G F I F M S M N L T K L A K ................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 32.3 Len: 99 Query Start:117 Query End:215 Subject Strand: null Subject Start: 1 Subject End: 33 .................................................................................................................... L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R D V ................................................................................................................................................................................................................................................................................................................................ .................................................................................................................... L H S E E G S R I Y A K R K I D V E P V F G R L K S V F G V R R V ................................................................................................................................................................................................................................................................................................................................ Subject: gi|89090918|ref|ZP_01163951.1| transposase [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 8.0E-6 bit: 34.7 Len: 96 Query Start:197 Query End:292 Subject Strand: null Subject Start: 420 Subject End: 451 .................................................................................................................................................................................................... F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K ................................................................................................................................................................................................................................................... .................................................................................................................................................................................................... F S I R R T H L R G Q R A V E N D M G L A L M A L N L T K F G Q ................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-6 bit: 31.6 Len: 204 Query Start:6 Query End:209 Subject Strand: null Subject Start: 356 Subject End: 423 ..... N S L E I N L D C D D E P E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R * I F A K R K I D M K S V F G Q I K V C L V I R ...................................................................................................................................................................................................................................................................................................................................... ..... H Q L S V K L D E L A K T P G G R Q R Y M K V N P T W N Y Y K A K V K D T P S S D E G K A I Y R R R K F D V E P V F G H M K R D F S I R ...................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: SMT_2029:SMT_2030|SMT_2029:SMT_2030:acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA:-><-:1944345..1944879 535 aagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 18 End: 137 ................. M N L D C D D E P E S A P Q K G L Y M N E R Y Q C L K I K E Y Q A L L S S K G R .............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 53 Strand: + Start: 170 End: 328 ......................................................................................................................................................................... M C L W A D K G L F G Y K R C H L K G K R Q V R I D M G F V L M V N N L L K Y N K R K R Q N F Q X X L I N ............................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 327 End: 518 ...................................................................................................................................................................................................................................................................................................................................... M X X X R G S G R A P N T Q T A S P R A L A D S L M Q S L H A C R S T L E D P P V L G W S P R S G N S Y D P S V L E R K ................. Protein_Len: 44 Strand: - Start: 331 End: 462 .......................................................................................................................................................................................................................................................................................................................................... X X A L F R F L A W Y A F R R E G R T P R N M L A S S A H R C T S E L P D G Q A L I T M ......................................................................... Protein_Len: 52 Strand: - Start: 323 End: 478 .................................................................................................................................................................................................................................................................................................................................. N I L X X R P L P L A G L V C V A E G R A N A S E N I C L K C A Q L D V R S S G G T S P H D G L D P F M ......................................................... Protein_Len: 36 Strand: - Start: 217 End: 324 ........................................................................................................................................................................................................................ R F P L R W T L I S M P N T S M T L L R S F Y L L L F L C F K W X X X M ................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 123 End: 254 .......................................................................................................................... R G L T S L N E S F T L N I H F R D K P L Y L N T Q N Y S I D D S L Y A G L S F Q C P M ......................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 113 End: 313 ................................................................................................................ L Y I K A L R L I S I F D T K P C I F T Q K T I L S T M Q F T L A L H S N V H S E Y E H D V V Q Q F I I L S L P L V E M .............................................................................................................................................................................................................................. aagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 76 HP_score: -7.8 Tail_Score: -4.18494 Start: 119 End: 141 Full_Region: AGAATATCAGGCACT TTTATCTTCC AAG GGTAGATAAA TTTTCGCTAAACGTA ......................................................................................................................TTTATCTTCCAAGGGTAGATAAA.......................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SMT_2029:SMT_2030|SMT_2029:SMT_2030:acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA:-><-:1944345..1944879 535 aagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Intra-Species Hit: Count: 19 Min: 401 Max: 535 Len: 135 Subject: smit_SMT_2029_SMT_2030|acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA|POSITIVE:NEGATIVE|[1944345,1944879]|535 HSP 1 e-value: 2.0E-70 bit: 268.0 Len: 135 Query Start:401 Query End:535 Subject Strand: POSITIVE Subject Start: 401 Subject End: 535 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaaaaaagataataaagtaaaagttatccacaag Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 6.0E-52 bit: 206.0 Len: 104 Query Start:401 Query End:504 Subject Strand: NEGATIVE Subject Start: 451 Subject End: 554 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaa............................... ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagaa............................... Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 103 Query Start:401 Query End:503 Subject Strand: NEGATIVE Subject Start: 42 Subject End: 144 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 103 Query Start:401 Query End:503 Subject Strand: POSITIVE Subject Start: 697 Subject End: 799 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 103 Query Start:401 Query End:503 Subject Strand: POSITIVE Subject Start: 916 Subject End: 1018 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 103 Query Start:401 Query End:503 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 198 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ HSP 2 e-value: 4.0E-22 bit: 107.0 Len: 54 Query Start:401 Query End:454 Subject Strand: POSITIVE Subject Start: 848 Subject End: 901 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg................................................................................. Subject: smit_SMT_2044_SMT_2045|transcriptional activator TipA, putative:K+ transport system, NAD-binding component|NEGATIVE:POSITIVE|[1955976,1956278]|303 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 159 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. HSP 2 e-value: 9.0E-11 bit: 69.9 Len: 43 Query Start:460 Query End:502 Subject Strand: POSITIVE Subject Start: 226 Subject End: 268 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag................................. Subject: smit_SMT_2000_SMT_2001|hypothetical protein:membrane protease protein family|NEGATIVE:POSITIVE|[1923199,1923526]|328 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 194 Subject End: 295 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1985_SMT_1986|hypothetical protein predicted by Glimmer/Critica:mercuric reductase|NEGATIVE:POSITIVE|[1914662,1914982]|321 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 223 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 544 Subject End: 645 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 397 Subject End: 498 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 115 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1913_SMT_1914|RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC|POSITIVE:POSITIVE|[1858826,1859625]|800 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 597 Subject End: 698 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 38 Subject End: 139 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 154 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 630 Subject End: 731 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 1224 Subject End: 1325 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 102 Query Start:401 Query End:502 Subject Strand: POSITIVE Subject Start: 246 Subject End: 347 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag................................. Subject: smit_SMT_1558_SMT_1559|hypothetical protein:6- phosphofructokinase|NEGATIVE:NEGATIVE|[1544149, 1544703]|555 HSP 1 e-value: 4.0E-50 bit: 200.0 Len: 103 Query Start:401 Query End:503 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 270 ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ ................................................................................................................................................................................................................................................................................................................................................................................................................aatgcrgagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaga................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGAAAAAAGAUAAUAAAGUAAAAGUUAUCCACAAG ..(((((.((......)))))))(((((..(((((..((((..((((...))))..))))..)))))...(....).....)))))((((....))))..........((((((.........))))))...... (-36.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUGUGGAUAACUUUUACUUUAUUAUCUUUUUUCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUU ...(((((.....)))))...................((((....))))((((.(((...(..((((..(((((.......)))))..))))..).....))).....)))).((((((......)).))))... (-32.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1020 50 1 186 137 smit:SMT_959|5end_1-acyl-sn-glycerol-3-phosphate_acyltransferase_905283..905513_POSITIVE 876 42 1 231 190 smit:SMT_1986|5end_mercuric_reductase_1914843..1915073_POSITIVE 788 38 1 231 194 smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE 654 67 36 231 200 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 432 79 52 231 204 smit:SMT_712|5end_alcohol_dehydrogenase,_zinc-containing_620381..620611_NEGATIVE 402 107 81 185 157 smit:SMT_1671|5end_hypothetical_protein_1659757..1659987_NEGATIVE 367 100 57 192 146 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 367 100 57 212 166 smit:SMT_389|5end_PTS_system,_galactitol-specific_IIA_component,_putative_321779..322009_POSITIVE 341 58 15 182 130 smit:SMT_849|5end_hypothetical_protein_796127..796357_NEGATIVE 336 57 11 70 19 smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE 335 70 23 151 101 smit:SMT_1291|5end_hypothetical_protein_1253875..1254105_POSITIVE 333 59 15 65 17 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 323 97 55 45 5 smit:SMT_141|5end_K03495_glucose_inhibited_division_protein_A_91408..91638_POSITIVE 320 67 24 164 116 smit:SMT_1634|5end_2,3,4,5-tetrahydropyridine-2-carboxylate_N-succinyltransferase,_putative_1621074..1621304_POSITIVE 318 46 1 205 148 smit:SMT_110|5end_alpha-L-fucosidase_57445..57675_POSITIVE 314 98 56 214 176 smit:SMT_832|5end_hypothetical_protein_775104..775334_NEGATIVE 313 70 22 51 5 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 311 100 54 54 6 smit:SMT_1152|5end_hypothetical_protein_1097197..1097427_NEGATIVE 309 58 17 219 176 smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE 308 103 77 35 6 smit:SMT_956|5end_hypothetical_protein_predicted_by_Glimmer/Critica_904789..905019_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1098 50 1 73 24 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 1098 50 1 62 13 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 1098 50 1 73 24 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 1098 50 1 78 29 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 1098 50 1 62 13 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 1098 50 1 73 24 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 1098 50 1 62 13 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 1098 50 1 73 24 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 1098 50 1 73 24 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 1098 50 1 62 13 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 1098 50 1 62 13 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 1098 50 1 78 29 smit:SMT_1852|3end_1,4-alpha-glucan_branching_enzyme_1816467..1816617_NEGATIVE 1098 50 1 78 29 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 1029 90 42 49 1 smit:SMT_479|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_415604..415754_NEGATIVE 1020 50 1 62 13 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 1002 100 51 51 2 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE 913 100 52 128 80 smit:SMT_713|3end_heat_shock_protein_HtpX_620505..620655_NEGATIVE 730 102 65 38 1 smit:SMT_1857|3end_hypothetical_protein_1821145..1821295_POSITIVE 565 113 76 43 1 smit:SMT_1928|3end_O-methyltransferase_family_protein_1869158..1869308_NEGATIVE 471 102 78 114 90 smit:SMT_1874|3end_hypothetical_protein_1832623..1832773_NEGATIVE