Origin IGS: aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaatgtgcagaacctgctggactccatgagggcggacacggcggtgtgcttgaggccggttgacattctcgacggcgaggttgatgacgaagccggcgatgccggtgatgatgccgatggcgaagcagaaggtccacttgagcaccacgtaccgcacctggtcggctttccctctcgacctccagttctgatcgaacaggtcgttctctattatcctgtaacccaaatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atttacacactttctaactaagtcgctttattcttcccagtattagtcgtctacttccgcaaagacttgggttgctttcacagcttttcttccctttccagcannnnnttaattaattaannnnncccaatccttgcttctccatcatgttgaatkgttgatycaatgtcgagatgaaatgctttttcttatccaatagtgttccatgatttgcttcttgattgggatagcatctcaatgttgctgcctcgtttcgtatggtgatccaattgctctctgtttattgattcagctgtcctctcaaggacatgtcatgttcctgccacctattgtcttgtcagaaatgtttgtatcttgcttgcccccacttgcattttcatccacctactcctgcggaggttatcttactcgctgcaattaccattccaatttgctaatatagtaatatacacagctctgtaacctgttggtaatattttcgtcggtttgcgacaatgctaattcgttttccttttctttggggatttgatttgggttacaggataatagagaacgacctgttcgatcagaactggaggtcgagagggaaagccgaccaggtgcggtacgtggtgctcaagtggaccttctgcttcgccatcggcatcatcaccggcatcgccggcttcgtcatcaacctcgccgtcgagaatgtcaaccggcctcaagcacaccgccgtgtccgccctcatggagtccagcaggttctgcacattgcctcctattgccnnnnnttaattaattaannnnncattgcaaaaccacattaggagattatatataatggtattataaagttttggtgaggtgggaggggattaaatatccggttttaaagttgaggactttcaatcaaaattagggagtatttggaatttttcctaaactatattatgtcataattataattaamctataaatatataataaaaggaaattttgaaaactaatttctaaaaaaatactaactctatcataaaaatacaataacctactatgagatgtgacaaattctaatattacgagtttggataggtcccatgtccaaatacctaatattaggatgtgttccatctcatactaagtcgctatttttgaaatatgggaagtagagaatatcatgtaagtttatctaatttgactacctttgatcaaaatttataaatttgatttattttaaggaaaagaagctccctagaaataatgaaaaatttagtcatacctcggtgaaagattgggattttagttttactgagtgagtactaaataaacatgggatttaccatcaatt Mask Tandem Repeat Region ================================================ aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaatgtgcagaacctgctggactccatgagggcggacacggcggtgtgcttgaggccggttgacattctcgacggcgaggttgatgacgaagccggcgatgccggtgatgatgccgatggcgaagcagaaggtccacttgagcaccacgtaccgcacctggtcggctttccctctcgacctccagttctgatcgaacaggtcgttctctattatcctgtaacccaaatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Find is-nt database================================================ Query_seq: SMT_2012:SMT_2013|SMT_2012:SMT_2013:hypothetical protein predicted by Glimmer/Critica:alpha-glycerophosphate oxidase:<-->:1930643..1931972 1330 aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaatgtgcagaacctgctggactccatgagggcggacacggcggtgtgcttgaggccggttgacattctcgacggcgaggttgatgacgaagccggcgatgccggtgatgatgccgatggcgaagcagaaggtccacttgagcaccacgtaccgcacctggtcggctttccctctcgacctccagttctgatcgaacaggtcgttctctattatcctgtaacccaaatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2012:SMT_2013|SMT_2012:SMT_2013:hypothetical protein predicted by Glimmer/Critica:alpha-glycerophosphate oxidase:<-->:1930643..1931972 1330 aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaatgtgcagaacctgctggactccatgagggcggacacggcggtgtgcttgaggccggttgacattctcgacggcgaggttgatgacgaagccggcgatgccggtgatgatgccgatggcgaagcagaaggtccacttgagcaccacgtaccgcacctggtcggctttccctctcgacctccagttctgatcgaacaggtcgttctctattatcctgtaacccaaatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2012:SMT_2013|SMT_2012:SMT_2013:hypothetical protein predicted by Glimmer/Critica:alpha-glycerophosphate oxidase:<-->:1930643..1931972 1330 aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaatgtgcagaacctgctggactccatgagggcggacacggcggtgtgcttgaggccggttgacattctcgacggcgaggttgatgacgaagccggcgatgccggtgatgatgccgatggcgaagcagaaggtccacttgagcaccacgtaccgcacctggtcggctttccctctcgacctccagttctgatcgaacaggtcgttctctattatcctgtaacccaaatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 578 Max: 800 Len: 223 Subject: UniRef90_A2YTR4 Cluster: Hypothetical protein; n=2; Oryza sativa|Rep: Hypothetical protein - Oryza sativa (indica cultivar-group) HSP 1 e-value: 2.0E-14 bit: 71.2 Len: 165 Query Start:636 Query End:800 Subject Strand: null Subject Start: 51 Subject End: 105 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L G Y R I I E N D L F D Q N W R S R G K A D Q V R Y V V L K W X X X X X X X X X X X X X X X X I N L A V E N V .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L D Y E I I E N D L F D Q N W R S R G K A D Q V R Y V V L K W T F C F A I G I I T G I A G F V I N L A V E N V .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-14 bit: 32.0 Len: 54 Query Start:578 Query End:631 Subject Strand: null Subject Start: 107 Subject End: 124 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. G L K H T A V S A L M E S S R F C T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. G L K H T A V S A L M E S S S Y W T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 218 End: 397 ......................................................................................................................................................................................................................... M E H I L I L G I W T W D L S K L V I L E F V T S H S R L L Y F Y D R V S I F L E I S F Q N F L L L Y I Y X L I I I M T ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 634 End: 762 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T F S T A R L M T K P A M P V M M P M A K Q K V H L S T T Y R T W S A F P L D L Q F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 567 End: 830 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G G N V Q N L L D S M R A D T A V C L R P V D I L D G E V D D E A G D A G D D A D G E A E G P L E H H V P H L V G F P .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 806 End: 910 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P K E K E N E L A L S Q T D E N I T N R L Q S C V Y Y Y I S K L E W .................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 1047 End: 1139 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N R E Q L D H H T K R G S N I E M L S Q S R S K S W N T I G ............................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 1066 End: 1215 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T I R N E A A T L R C Y P N Q E A N H G T L L D K K K H F I S T L X Q X F N M M E K Q G L G X X N ................................................................................................................... Protein_Len: 42 Strand: - Start: 897 End: 1022 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ C I P I T I A A L L I V E A P T P P H F H L H P C A L Y L C K Q C S L L H C S C S M .................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 892 End: 1125 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T S S F A L P P L C S V F M E S L V I P P L F M V H G Q S S L Q I L L C L A I P D G Y S V L C C C Q S A I G I L F C I M ............................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 872 End: 1054 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A T Y I V I N A F Q F P L Q L S Y S L R R L L L H I F I C T P A L L I C V N R V L C Y T A P V H C T R S L V A S D I F M .................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 557 End: 766 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ R S S E M L A S V A T H K L G T S M R S P S T S S S A P S A P S S A S P S A S P G S S C W T G C R T P K G E R G G T R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 553 End: 759 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ A S G A P S W S P P C P P T S S A P Q C E R R R P Q H R L R R H R H H H R H R L L L D V Q A G R V A G P R S E R E V E M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 549 End: 836 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I V F G A I G T I I G I A F C F T W K L V V Y R V Q D A K G R S R W N Q D F L D N E I I R Y G L D F G W L F P F R I L M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 183 End: 281 ...................................................................................................................................................................................... K G Y K L F L S K T H S P V C G L I L Y K S M P G I W V R L I L M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 36 End: 131 ................................... E T F S F D W D K V S T H S F K E N N R P L K K E K F Y I L N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 360 End: 389 .......................................................................................................................................................................................................................................................................................................................................................................TTTTATTATATATTTATAGTTAATTATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 371 End: 400 ..................................................................................................................................................................................................................................................................................................................................................................................ATTTATAGTTAATTATAATTATGACATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 83 Start: 901 End: 917 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATGGTAATTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................. aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 46 HP_score: -3.2 Tail_Score: -3.14944 Start: 224 End: 252 Full_Region: agtttggataggtcc catgtccaaata cctaa tattaggatgtg ttccatctcatacta ...............................................................................................................................................................................................................................catgtccaaatacctaatattaggatgtg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -8.7 Tail_Score: -3.1241 Start: 228 End: 280 Full_Region: atgagatgtgacaaa ttctaatattacgagtttggatagg tcc catgtccaaatacctaatattagga tgtgttccatctcat ...................................................................................................................................................................................................................................ttctaatattacgagtttggataggtcccatgtccaaatacctaatattagga.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 76 HP_score: -10.5 Tail_Score: -2.52635 Start: 667 End: 679 Full_Region: ccatcggcatcatca ccggc atc gccgg cttcgtcatcaacct ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccggcatcgccgg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 46 HP_score: -3.4 Tail_Score: -3.2178 Start: 768 End: 780 Full_Region: CCTCCAGTTCTGATC GAAC AGGTC GTTC TCTATTATCCTGTAA ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGTCGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SMT_2012:SMT_2013|SMT_2012:SMT_2013:hypothetical protein predicted by Glimmer/Critica:alpha-glycerophosphate oxidase:<-->:1930643..1931972 1330 aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagtatttttttagaaattagttttcaaaatttccttttattatatatttatagkttaattataattatgacataatatagtttaggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaatgnnnnnttaattaattaannnnnggcaataggaggcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat Intra-Species Hit: Count: 1 Min: 1 Max: 1330 Len: 1330 Subject: smit_SMT_2012_SMT_2013|hypothetical protein predicted by Glimmer/Critica:alpha-glycerophosphate oxidase|NEGATIVE:POSITIVE|[1930643,1931972]|1330 HSP 1 e-value: 0.0 bit: 967.0 Len: 530 Query Start:801 Query End:1330 Subject Strand: POSITIVE Subject Start: 801 Subject End: 1330 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattnnnnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcaaatccccaaagaaaaggaaaacgaattagcattgtcgcaaaccgacgaaaatattaccaacaggttacagagctgtgtatattactatattagcaaattggaatggtaattgcagcgagtaagataacctccgcaggagtaggtggatgaaaatgcaagtgggggcaagcaagatacaaacatttctgacaagacaataggtggcaggaacatgacatgtccttgagaggacagctgaatcaataaacagagagcaattggatcaccatacgaaacgaggcagcaacattgagatgctatcccaatcaagaagcaaatcatggaacactattggataagaaaaagcatttcatctcgacattgratcaacmattcaacatgatggagaagcaaggattgggnnnnnttaattaattaannnnntgctggaaagggaagaaaagctgtgaaagcaacccaagtctttgcggaagtagacgactaatactgggaagaataaagcgacttagttagaaagtgtgtaaat HSP 2 e-value: 0.0 bit: 653.0 Len: 329 Query Start:1 Query End:329 Subject Strand: POSITIVE Subject Start: 1 Subject End: 329 aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagta......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aattgatggtaaatcccatgtttatttagtactcactcagtaaaactaaaatcccaatctttcaccgaggtatgactaaatttttcattatttctagggagcttcttttccttaaaataaatcaaatttataaattttgatcaaaggtagtcaaattagataaacttacatgatattctctacttcccatatttcaaaaatagcgacttagtatgagatggaacacatcctaatattaggtatttggacatgggacctatccaaactcgtaatattagaatttgtcacatctcatagtaggttattgtatttttatgatagagttagta......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-67 bit: 258.0 Len: 130 Query Start:410 Query End:539 Subject Strand: POSITIVE Subject Start: 410 Subject End: 539 .........................................................................................................................................................................................................................................................................................................................................................................................................................ggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................ggaaaaattccaaatactccctaattttgattgaaagtcctcaactttaaaaccggatatttaatcccctcccacctcaccaaaactttataataccattatatataatctcctaatgtggttttgcaat....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUGAUGGUAAAUCCCAUGUUUAUUUAGUACUCACUCAGUAAAACUAAAAUCCCAAUCUUUCACCGAGGUAUGACUAAAUUUUUCAUUAUUUCUAGGGAGCUUCUUUUCCUUAAAAUAAAUCAAAUUUAUAAAUUUUGAUCAAAGGUAGUCAAAUUAGAUAAACUUACAUGAUAUUCUCUACUUCCCAUAUUUCAAAAAUAGCGACUUAGUAUGAGAUGGAACACAUCCUAAUAUUAGGUAUUUGGACAUGGGACCUAUCCAAACUCGUAAUAUUAGAAUUUGUCACAUCUCAUAGUAGGUUAUUGUAUUUUUAUGAUAGAGUUAGUAUUUUUUUAGAAAUUAGUUUUCAAAAUUUCCUUUUAUUAUAUAUUUAUAGKUUAAUUAUAAUUAUGACAUAAUAUAGUUUAGGAAAAAUUCCAAAUACUCCCUAAUUUUGAUUGAAAGUCCUCAACUUUAAAACCGGAUAUUUAAUCCCCUCCCACCUCACCAAAACUUUAUAAUACCAUUAUAUAUAAUCUCCUAAUGUGGUUUUGCAAUGNNNNNUUAAUUAAUUAANNNNNGGCAAUAGGAGGCAAUGUGCAGAACCUGCUGGACUCCAUGAGGGCGGACACGGCGGUGUGCUUGAGGCCGGUUGACAUUCUCGACGGCGAGGUUGAUGACGAAGCCGGCGAUGCCGGUGAUGAUGCCGAUGGCGAAGCAGAAGGUCCACUUGAGCACCACGUACCGCACCUGGUCGGCUUUCCCUCUCGACCUCCAGUUCUGAUCGAACAGGUCGUUCUCUAUUAUCCUGUAACCCAAAUCAAAUCCCCAAAGAAAAGGAAAACGAAUUAGCAUUGUCGCAAACCGACGAAAAUAUUACCAACAGGUUACAGAGCUGUGUAUAUUACUAUAUUAGCAAAUUGGAAUGGUAAUUGCAGCGAGUAAGAUAACCUCCGCAGGAGUAGGUGGAUGAAAAUGCAAGUGGGGGCAAGCAAGAUACAAACAUUUCUGACAAGACAAUAGGUGGCAGGAACAUGACAUGUCCUUGAGAGGACAGCUGAAUCAAUAAACAGAGAGCAAUUGGAUCACCAUACGAAACGAGGCAGCAACAUUGAGAUGCUAUCCCAAUCAAGAAGCAAAUCAUGGAACACUAUUGGAUAAGAAAAAGCAUUUCAUCUCGACAUUGRAUCAACMAUUCAACAUGAUGGAGAAGCAAGGAUUGGGNNNNNUUAAUUAAUUAANNNNNUGCUGGAAAGGGAAGAAAAGCUGUGAAAGCAACCCAAGUCUUUGCGGAAGUAGACGACUAAUACUGGGAAGAAUAAAGCGACUUAGUUAGAAAGUGUGUAAAU .....((((......))))..........(((.((((...............((((((((((....((((..((((((..(((....((((((.(((((((......))))))))))))).(((((.........)))))..)))..)))))).((((..((....))..))))..))))..((((((((..(((((..((((..(((((.(((((((((..(((.((.(((((((((.(..((((((...(....)..))))))..).))))))))).)).)))..))))))))).)))))..))))..(((((((((..((..(((((((.....((((.....))))....((((((...(((((((((((((((.(((....))))))))).)).)))))))..))))))......)))))))..))..(((((((((...(((((((.(((.......((((.....))))....((((((.((.....................(((((..(((((((.(((...................................))).)))))))..))))).....(((((.(((......((((((.(((...((((((((((..(((((..(((...((((((.(((((..(((...)))...((((((...)))))).....))))).))).))).)))..)))...))..))))).....))))).....))).)))))).....((((((...((((.....)))))))))).......(((((((((((((.........(((..........))).............((((((.....))))))..............)))))))).(((((....((((((((.((((....)))).)))))))).)))))......)))))..)))))))).))))))))..........))))))))))..................(((....))).....(((((((.....(((...((((((....))))))((((..((........(....)...(((....)))........))..))))..))).....))))))).))))))))).....))))))))).....)))))...((((.....))))..............................)))).)))).)))))))))).........((((((((.....((((...............(((.....)))..(((((((((((((....))))).)))).....))))........))))..))))))))..)))).)))... (-323.55) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUACACACUUUCUAACUAAGUCGCUUUAUUCUUCCCAGUAUUAGUCGUCUACUUCCGCAAAGACUUGGGUUGCUUUCACAGCUUUUCUUCCCUUUCCAGCANNNNNUUAAUUAAUUAANNNNNCCCAAUCCUUGCUUCUCCAUCAUGUUGAAUKGUUGAUYCAAUGUCGAGAUGAAAUGCUUUUUCUUAUCCAAUAGUGUUCCAUGAUUUGCUUCUUGAUUGGGAUAGCAUCUCAAUGUUGCUGCCUCGUUUCGUAUGGUGAUCCAAUUGCUCUCUGUUUAUUGAUUCAGCUGUCCUCUCAAGGACAUGUCAUGUUCCUGCCACCUAUUGUCUUGUCAGAAAUGUUUGUAUCUUGCUUGCCCCCACUUGCAUUUUCAUCCACCUACUCCUGCGGAGGUUAUCUUACUCGCUGCAAUUACCAUUCCAAUUUGCUAAUAUAGUAAUAUACACAGCUCUGUAACCUGUUGGUAAUAUUUUCGUCGGUUUGCGACAAUGCUAAUUCGUUUUCCUUUUCUUUGGGGAUUUGAUUUGGGUUACAGGAUAAUAGAGAACGACCUGUUCGAUCAGAACUGGAGGUCGAGAGGGAAAGCCGACCAGGUGCGGUACGUGGUGCUCAAGUGGACCUUCUGCUUCGCCAUCGGCAUCAUCACCGGCAUCGCCGGCUUCGUCAUCAACCUCGCCGUCGAGAAUGUCAACCGGCCUCAAGCACACCGCCGUGUCCGCCCUCAUGGAGUCCAGCAGGUUCUGCACAUUGCCUCCUAUUGCCNNNNNUUAAUUAAUUAANNNNNCAUUGCAAAACCACAUUAGGAGAUUAUAUAUAAUGGUAUUAUAAAGUUUUGGUGAGGUGGGAGGGGAUUAAAUAUCCGGUUUUAAAGUUGAGGACUUUCAAUCAAAAUUAGGGAGUAUUUGGAAUUUUUCCUAAACUAUAUUAUGUCAUAAUUAUAAUUAAMCUAUAAAUAUAUAAUAAAAGGAAAUUUUGAAAACUAAUUUCUAAAAAAAUACUAACUCUAUCAUAAAAAUACAAUAACCUACUAUGAGAUGUGACAAAUUCUAAUAUUACGAGUUUGGAUAGGUCCCAUGUCCAAAUACCUAAUAUUAGGAUGUGUUCCAUCUCAUACUAAGUCGCUAUUUUUGAAAUAUGGGAAGUAGAGAAUAUCAUGUAAGUUUAUCUAAUUUGACUACCUUUGAUCAAAAUUUAUAAAUUUGAUUUAUUUUAAGGAAAAGAAGCUCCCUAGAAAUAAUGAAAAAUUUAGUCAUACCUCGGUGAAAGAUUGGGAUUUUAGUUUUACUGAGUGAGUACUAAAUAAACAUGGGAUUUACCAUCAAUU ...(((.(((((...(((((((............(((((((...((((.((.((((.....((((((.((((.(((.....))).(((..(((((((((.(((.....((((((((((((.......((((.((((((.(((((((((.((((...((((...)))).)))).))))...(((((..(((......(((.(...((((((.((.(((((((..((((((((...((((((..((......))..))).))).((..((((.((.....))..))))..)).)))))))).))))))))).))))))..))))....((((((((((((((....)).................((((...(((((.((....(((.((....((((.(((......)))..)))).(((((((.......((((((...))))))..((((......))))......)))))))......)).)))....)).)))))....(((..(((((.......)))))..)))..))))..))))))))))))....((((((((((.....))))...)))))).)))..))))).....(((.(((((((((((((...(((..(.....)..))).(((...(((((.....(((((...))))).............((((....)))).)))))....)))........))))).)))).)))))))..)))))...))))))....((.....)).....)))).......))))))))))))........)))...(((.((((((((..((((((((....))).)))))..)))))))).))))))))))))..))).)))))))))).)))).)).))))((((.((....(((((((((.((..(((((..((((......((((((((.....(((((.......)))))..))))))))..)))))))))..))......(((((.......((((..((.(((..((((((((.....((.((.(((((((((..(((.((((((((((((.(.((((((((((....).))))))))).).)))))))))))).)))..))))))))).)).))...))))))))..))).))..)))).((((((.....(((((((((..(.((((((.......).))))).)..)))))))))...))))))..)))))....))))))))).....((((.........)))).....))))))..))))))).))))))).....))))).)))..........((((......))))..... (-331.08) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 828 80 31 171 122 smit:SMT_2012|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1930552..1930782_NEGATIVE 431 679 632 138 87 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 417 633 598 53 6 smit:SMT_903|5end_hypothetical_protein_852310..852540_NEGATIVE 390 650 604 224 166 smit:SMT_1010|5end_hypothetical_protein_948292..948522_POSITIVE 390 650 604 138 80 smit:SMT_1009|5end_hypothetical_protein_predicted_by_Glimmer/Critica_948206..948436_POSITIVE 389 655 613 50 10 smit:SMT_1213|5end_fatty_acid/phospholipid_synthesis_protein_PlsX_1172655..1172885_NEGATIVE 388 650 603 215 151 smit:SMT_1249|5end_hypothetical_protein_1210795..1211025_NEGATIVE 388 726 683 49 5 smit:SMT_220|5end_Hypothetical_zinc_metalloprotease_151747..151977_POSITIVE 386 745 703 75 26 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 379 759 716 185 129 smit:SMT_2051|5end_enoyl-CoA_hydratase_1960639..1960869_NEGATIVE 371 979 936 215 155 smit:SMT_2069|5end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1974656..1974886_POSITIVE 370 689 641 224 166 smit:SMT_749|5end_shikimate_kinase_653971..654201_NEGATIVE 367 657 612 62 4 smit:SMT_1957|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1890645..1890875_POSITIVE 367 732 691 49 5 smit:SMT_141|5end_K03495_glucose_inhibited_division_protein_A_91408..91638_POSITIVE 364 740 691 70 14 smit:SMT_1329|5end_GTP-binding_protein_CgtA_1305788..1306018_NEGATIVE 361 670 621 181 133 smit:SMT_264|5end_hypothetical_protein_203863..204093_NEGATIVE 360 660 615 228 192 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 360 764 722 145 85 smit:SMT_384|5end_hypothetical_protein_319406..319636_POSITIVE 359 622 581 54 3 smit:SMT_748|5end_prephenate_dehydratase_653498..653728_NEGATIVE 358 758 711 189 151 smit:SMT_1328|5end_hypothetical_protein_1304468..1304698_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 650 604 65 8 smit:SMT_1078|3end_folylpolyglutamate_synthase_1015391..1015541_NEGATIVE 417 633 598 69 22 smit:SMT_904|3end_hypothetical_protein_852294..852444_NEGATIVE 389 655 613 53 13 smit:SMT_1214|3end_K03584_DNA_repair_protein_RecO_(recombination_protein_O)_1172652..1172802_NEGATIVE 386 706 662 75 27 smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE 383 660 611 63 26 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 383 660 611 63 26 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 367 732 691 59 15 smit:SMT_140|3end_NUDIX_family_hydrolase_91498..91648_POSITIVE 366 636 591 145 87 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 360 660 615 63 27 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 360 764 722 66 6 smit:SMT_383|3end_cysteinyl-tRNA_synthetase_319407..319557_POSITIVE 359 622 581 57 6 smit:SMT_749|3end_shikimate_kinase_653495..653645_NEGATIVE 348 637 591 148 87 smit:SMT_2044|3end_transcriptional_activator_TipA,_putative_1955274..1955424_NEGATIVE 348 680 631 59 4 smit:SMT_1954|3end_6-phospho-beta-glucosidase_1888831..1888981_POSITIVE 348 1048 1003 77 29 smit:SMT_1459|3end_K02037_phosphate_transport_system_permease_protein_1441519..1441669_POSITIVE 343 630 587 136 74 smit:SMT_2016|3end_tyrosine_recombinase_1933021..1933171_NEGATIVE 342 679 633 49 1 smit:SMT_455|3end_cation_transport_ATPase_393993..394143_POSITIVE 341 677 634 123 72 smit:SMT_242|3end_PTS_system,_mannose-specific_IID_component_179163..179313_NEGATIVE 339 624 581 74 24 smit:SMT_1729|3end_exodeoxyribonuclease_VII_small_subunit_1714858..1715008_POSITIVE 339 637 591 66 18 smit:SMT_1258|3end_acetolactate_synthase_large_subunit_1223166..1223316_NEGATIVE 339 645 603 54 6 smit:SMT_415|3end_hypothetical_protein_359488..359638_POSITIVE