Origin IGS: cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tggaacatttggattacctggagtaaatgttggtttaccagtttgttctttaccttgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctnnnnnttaattaattaannnnncgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcg Mask Tandem Repeat Region ================================================ cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Find is-nt database================================================ Query_seq: SMT_2005:SMT_2006|SMT_2005:SMT_2006:pullulanase, type I:hypothetical protein predicted by Glimmer/Critica:<-->:1926380..1926611 232 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_2005:SMT_2006|SMT_2005:SMT_2006:pullulanase, type I:hypothetical protein predicted by Glimmer/Critica:<-->:1926380..1926611 232 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_2005:SMT_2006|SMT_2005:SMT_2006:pullulanase, type I:hypothetical protein predicted by Glimmer/Critica:<-->:1926380..1926611 232 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 99 End: 230 .................................................................................................. M X X X D P P V L G W S P R S G N S Y D P S V L E S K V K N K L V N Q H L L Q V I Q M F .. Protein_Len: 32 Strand: - Start: 1 End: 96 A R P S A T Q T N P A R G S G R E S V R Q A R D N P Q P X X X M ........................................................................................................................................ cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_2005:SMT_2006|SMT_2005:SMT_2006:pullulanase, type I:hypothetical protein predicted by Glimmer/Critica:<-->:1926380..1926611 232 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Intra-Species Hit: Count: 35 Min: 1 Max: 232 Len: 232 Subject: smit_SMT_2005_SMT_2006|pullulanase, type I:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1926380,1926611]|232 HSP 1 e-value: 1.0E-111 bit: 400.0 Len: 232 Query Start:1 Query End:232 Subject Strand: POSITIVE Subject Start: 1 Subject End: 232 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgnnnnnttaattaattaannnnnaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcaaggtaaagaacaaactggtaaaccaacatttactccaggtaatccaaatgttcca Subject: smit_SMT_2024_SMT_2025|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1940751,1941084]|334 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 82 Subject End: 167 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:109 Query End:140 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 32 ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 159 Subject End: 244 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 109 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1981_SMT_1982|K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:conserved hypothetical protein|POSITIVE:POSITIVE|[1912929,1913175]|247 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 82 Subject End: 167 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:109 Query End:140 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 32 ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 444 Subject End: 529 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 7.0E-31 bit: 135.0 Len: 68 Query Start:109 Query End:176 Subject Strand: POSITIVE Subject Start: 579 Subject End: 646 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ Subject: smit_SMT_1967_SMT_1968|dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein:transcription-repair coupling factor|NEGATIVE:NEGATIVE|[1899774,1900040]|267 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 95 Subject End: 180 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 45 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 93 Subject End: 178 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 249 Subject End: 334 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 3 e-value: 6.0E-16 bit: 85.7 Len: 43 Query Start:109 Query End:151 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 43 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 382 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 432 Subject End: 498 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 569 Subject End: 654 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 453 Subject End: 519 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 130 Subject End: 215 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 80 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1926_SMT_1927|mevalonate kinase:cell division protein FtsH|POSITIVE:NEGATIVE|[1868123,1868497]|375 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 82 Subject End: 167 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 5.0E-38 bit: 159.0 Len: 80 Query Start:1 Query End:80 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 283 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct........................................................................................................................................................ cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct........................................................................................................................................................ HSP 3 e-value: 6.0E-16 bit: 85.7 Len: 43 Query Start:109 Query End:151 Subject Strand: POSITIVE Subject Start: 333 Subject End: 375 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. HSP 4 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:109 Query End:140 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 32 ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 154 Subject End: 239 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 7.0E-31 bit: 135.0 Len: 68 Query Start:109 Query End:176 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 104 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ Subject: smit_SMT_1887_SMT_1888|LicC protein:K02026 multiple sugar transport system permease protein|POSITIVE:POSITIVE|[1841801,1842227]|427 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 82 Subject End: 167 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:109 Query End:140 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 32 ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 597 Subject End: 682 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 732 Subject End: 798 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1884_SMT_1885|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1839299,1839919]|621 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 444 Subject End: 529 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 6.0E-16 bit: 85.7 Len: 43 Query Start:109 Query End:151 Subject Strand: POSITIVE Subject Start: 579 Subject End: 621 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. Subject: smit_SMT_1873_SMT_1874|K02006 cobalt transport system ATP-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1832412,1832712]|301 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 93 Subject End: 178 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 6.0E-16 bit: 85.7 Len: 43 Query Start:109 Query End:151 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 43 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 169 Subject End: 254 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 7.0E-31 bit: 135.0 Len: 68 Query Start:109 Query End:176 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 119 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagc........................................................ Subject: smit_SMT_1851_SMT_1852|ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme|NEGATIVE:NEGATIVE|[1815812,1816556]|745 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 584 Subject End: 669 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 27 Query Start:109 Query End:135 Subject Strand: POSITIVE Subject Start: 719 Subject End: 745 ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 816 Subject End: 901 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 951 Subject End: 1017 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1690_SMT_1691|K06148 ATP-binding cassette, subfamily C, bacterial:putative deoxyribonuclease|NEGATIVE:POSITIVE|[1674870, 1675117]|248 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 95 Subject End: 180 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 45 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 1124 Subject End: 1209 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 2.0E-31 bit: 137.0 Len: 69 Query Start:109 Query End:177 Subject Strand: POSITIVE Subject Start: 1259 Subject End: 1327 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagca....................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagca....................................................... Subject: smit_SMT_779_SMT_780|ribonuclease BN, putative:peptidase family U32|NEGATIVE:NEGATIVE|[688621,688841]|221 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 95 Subject End: 180 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 45 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 231 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 281 Subject End: 347 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 748 Subject End: 833 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 163 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_325_SMT_326|K02029 polar amino acid transport system permease protein:K02029 polar amino acid transport system permease protein|NEGATIVE:NEGATIVE|[263114,263306]|193 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 82 Query Start:1 Query End:82 Subject Strand: NEGATIVE Subject Start: 36 Subject End: 117 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc...................................................................................................................................................... cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc...................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 27 Query Start:109 Query End:135 Subject Strand: POSITIVE Subject Start: 167 Subject End: 193 ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 86 Query Start:1 Query End:86 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 615 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggakaggcgsyttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 665 Subject End: 731 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_1971_SMT_1972|hypothetical protein predicted by Glimmer/Critica:uncharacterized conserved phage related protein|POSITIVE:POSITIVE|[1903587,1903801]|215 HSP 1 e-value: 2.0E-37 bit: 157.0 Len: 83 Query Start:1 Query End:83 Subject Strand: POSITIVE Subject Start: 77 Subject End: 159 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg..................................................................................................................................................... cgcgcggggagaagcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg..................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 27 Query Start:109 Query End:135 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 27 ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcac................................................................................................. Subject: smit_SMT_1558_SMT_1559|hypothetical protein:6- phosphofructokinase|NEGATIVE:NEGATIVE|[1544149, 1544703]|555 HSP 1 e-value: 8.0E-37 bit: 155.0 Len: 86 Query Start:1 Query End:86 Subject Strand: POSITIVE Subject Start: 285 Subject End: 369 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. cgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg.................................................................................................................................................. HSP 2 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 235 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... Subject: smit_SMT_2000_SMT_2001|hypothetical protein:membrane protease protein family|NEGATIVE:POSITIVE|[1923199,1923526]|328 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 69 Query Start:109 Query End:177 Subject Strand: POSITIVE Subject Start: 229 Subject End: 297 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagca....................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagca....................................................... HSP 2 e-value: 2.0E-12 bit: 73.8 Len: 37 Query Start:1 Query End:37 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 179 cgcgcggggagaggcggtttgcgtattgggcgctctt................................................................................................................................................................................................... cgcgcggggagaggcggtttgcgtattgggcgctctt................................................................................................................................................................................................... Subject: smit_SMT_2044_SMT_2045|transcriptional activator TipA, putative:K+ transport system, NAD-binding component|NEGATIVE:POSITIVE|[1955976,1956278]|303 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 124 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... HSP 2 e-value: 4.0E-11 bit: 69.9 Len: 43 Query Start:133 Query End:175 Subject Strand: POSITIVE Subject Start: 226 Subject End: 268 ....................................................................................................................................cacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ....................................................................................................................................cacctagatcaggaaccagctatgaccccagtgtgctgaaaag......................................................... HSP 3 e-value: 3.0E-8 bit: 60.0 Len: 30 Query Start:1 Query End:30 Subject Strand: POSITIVE Subject Start: 174 Subject End: 203 cgcgcggggagaggcggtttgcgtattggg.......................................................................................................................................................................................................... cgcgcggggagaggcggtttgcgtattggg.......................................................................................................................................................................................................... Subject: smit_SMT_2029_SMT_2030|acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA|POSITIVE:NEGATIVE|[1944345,1944879]|535 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: POSITIVE Subject Start: 436 Subject End: 502 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... HSP 2 e-value: 4.0E-20 bit: 99.6 Len: 50 Query Start:1 Query End:50 Subject Strand: NEGATIVE Subject Start: 337 Subject End: 386 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgct...................................................................................................................................................................................... cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgct...................................................................................................................................................................................... Subject: smit_SMT_1985_SMT_1986|hypothetical protein predicted by Glimmer/Critica:mercuric reductase|NEGATIVE:POSITIVE|[1914662,1914982]|321 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 67 Query Start:109 Query End:175 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 188 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaag......................................................... HSP 2 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:1 Query End:45 Subject Strand: POSITIVE Subject Start: 238 Subject End: 282 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcc........................................................................................................................................................................................... cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcc........................................................................................................................................................................................... Subject: smit_SMT_1942_SMT_1943|zinc metalloprotease ZmpB, truncated:alpha/beta hydrolase fold|POSITIVE:NEGATIVE|[1878445,1878659]|215 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 56 Query Start:1 Query End:56 Subject Strand: POSITIVE Subject Start: 82 Subject End: 137 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactga................................................................................................................................................................................ cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactga................................................................................................................................................................................ HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 32 Query Start:109 Query End:140 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 32 ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ ............................................................................................................aggatccccctgtgctaggatggtcacctaga............................................................................................ Subject: smit_SMT_387_SMT_388|hypothetical protein predicted by Glimmer/Critica:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[321179,321311]|133 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:109 Query End:153 Subject Strand: POSITIVE Subject Start: 89 Subject End: 133 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacagct............................................................................... HSP 2 e-value: 1.0E-10 bit: 67.9 Len: 34 Query Start:1 Query End:34 Subject Strand: NEGATIVE Subject Start: 6 Subject End: 39 cgcgcggggagaggcggtttgcgtattgggcgct...................................................................................................................................................................................................... cgcgcggggagaggcggtttgcgtattgggcgct...................................................................................................................................................................................................... Subject: smit_SMT_2001_SMT_2002|membrane protease protein family:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1923950,1924234]|285 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 43 Query Start:109 Query End:151 Subject Strand: POSITIVE Subject Start: 243 Subject End: 285 ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. ............................................................................................................aggatccccctgtgctaggatggtcacctagatcaggaaacag................................................................................. HSP 2 e-value: 4.0E-14 bit: 79.8 Len: 44 Query Start:1 Query End:44 Subject Strand: NEGATIVE Subject Start: 150 Subject End: 193 cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttc............................................................................................................................................................................................ cgcgcggggagaggcgggttgcgtattgggcgctcttccgcttc............................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCGCGGGGAGAGGCGGUUUGCGUAUUGGGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGNNNNNUUAAUUAAUUAANNNNNAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGCAAGGUAAAGAACAAACUGGUAAACCAACAUUUACUCCAGGUAAUCCAAAUGUUCCA ...(((((((..(((((...((((.....))))....)))))))))))).(((((...((((((((.(((....))))).))))))..............................((((..(((((.......)))))..))))...............)))))((((....)))).......(((((...(((...(((.............)))...)))..))))).. (-70.72) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGGAACAUUUGGAUUACCUGGAGUAAAUGUUGGUUUACCAGUUUGUUCUUUACCUUGCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUNNNNNUUAAUUAAUUAANNNNNCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCCCAAUACGCAAACCGCCUCUCCCCGCGCG .((((((.((((...(((.............)))...))))..))))))...(((((((((((((....)))))......(((((..((((..(((((.......)))))..))))..)...........................(((.((.((((......)).)))).)))...))))))))))))..((((.((((.((..............))))))..))))... (-65.46) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1203 50 1 141 92 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1203 50 1 209 160 smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE 1090 46 1 231 186 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 1090 46 1 231 186 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 1090 46 1 231 186 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 960 160 111 223 174 smit:SMT_959|5end_1-acyl-sn-glycerol-3-phosphate_acyltransferase_905283..905513_POSITIVE 803 34 1 219 186 smit:SMT_388|5end_branched-chain_amino_acid_transport_system_II_carrier_protein_321172..321402_POSITIVE 620 29 1 214 186 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 535 44 1 151 103 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 476 24 1 130 107 smit:SMT_464|5end_ribonuclease_Z_402867..403097_POSITIVE 448 49 2 227 165 smit:SMT_1972|5end_uncharacterized_conserved_phage_related_protein_1903662..1903892_POSITIVE 440 50 4 53 1 smit:SMT_1612|5end_K06024_segregation_and_condensation_protein_B_1600052..1600282_POSITIVE 439 188 154 186 157 smit:SMT_1671|5end_hypothetical_protein_1659757..1659987_NEGATIVE 439 49 2 205 143 smit:SMT_325|5end_K02029_polar_amino_acid_transport_system_permease_protein_263023..263253_NEGATIVE 432 152 125 231 204 smit:SMT_712|5end_alcohol_dehydrogenase,_zinc-containing_620381..620611_NEGATIVE 428 80 31 142 78 smit:SMT_338|5end_heat-inducible_transcription_repressor_HrcA_276825..277055_POSITIVE 406 176 131 195 147 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 386 86 48 199 160 smit:SMT_1982|5end_conserved_hypothetical_protein_1913036..1913266_POSITIVE 386 86 48 187 148 smit:SMT_1691|5end_putative_deoxyribonuclease_1674978..1675208_POSITIVE 386 86 48 212 173 smit:SMT_1156|5end_K07485_transposase_1099938..1100168_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1110 86 41 49 4 smit:SMT_780|3end_peptidase_family_U32_688752..688902_NEGATIVE 1038 160 111 110 61 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 1038 160 111 99 50 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 1038 160 111 110 61 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 1038 160 111 115 66 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 1038 160 111 99 50 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 1038 160 111 110 61 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 1038 160 111 99 50 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 1038 160 111 110 61 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 1038 160 111 110 61 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 1038 160 111 99 50 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 1038 160 111 99 50 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 1038 160 111 115 66 smit:SMT_1852|3end_1,4-alpha-glucan_branching_enzyme_1816467..1816617_NEGATIVE 1038 160 111 115 66 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 1024 170 121 52 3 smit:SMT_2030|3end_chromosomal_replication_initiator_protein_DnaA_1944790..1944940_NEGATIVE 1024 170 121 56 7 smit:SMT_479|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_415604..415754_NEGATIVE 973 170 123 48 1 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE 960 160 111 99 50 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 855 170 125 125 80 smit:SMT_713|3end_heat_shock_protein_HtpX_620505..620655_NEGATIVE 803 34 1 85 52 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE