Origin IGS: tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnnttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcttagcggggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttaattaannnnntctttgttcacacagctgcagaaaatagcggatggattgtttacgagattcacggggctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggaccccgctaagctggcggggttgccttactggttagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctgcaaaacgtctgcgacctgagcaacaacatgaatggtcttcggtttccgtgtttcgtaannnnnttaattaattaannnnntggtagtttgttctacactttacaagtgccctcggatgaatttctatgccctatctagttatactggggtagtttccttcaccactagtttactttttgatctaactaatatgccagatgctgtctatctgacactctcttaaaatttgga Mask Tandem Repeat Region ================================================ tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnnttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcttagcggggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Find is-nt database================================================ Query_seq: SMT_1978:SMT_1979|SMT_1978:SMT_1979:hypothetical protein:possible cell surface protein:<-<-:1909657..1910371 715 tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnnttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcttagcggggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1978:SMT_1979|SMT_1978:SMT_1979:hypothetical protein:possible cell surface protein:<-<-:1909657..1910371 715 tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnnttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcttagcggggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1978:SMT_1979|SMT_1978:SMT_1979:hypothetical protein:possible cell surface protein:<-<-:1909657..1910371 715 tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnnttacgaaacacggaaaccgaagaccattcatgttgttgctcaggtcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctaaccagtaaggcaaccccgccagcttagcggggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 282 Max: 549 Len: 268 Subject: UniRef90_Q19NK3 Cluster: Hypothetical protein; n=2; root|Rep: Hypothetical protein - Escherichia coli O1:K1 / APEC HSP 1 e-value: 1.0E-8 bit: 62.4 Len: 105 Query Start:282 Query End:386 Subject Strand: null Subject Start: 78 Subject End: 112 ......................................................................................................................................................................................................................................................................................... R R K E H S G S V G S W P R V R M I V L L S L R T P L S W R G C L T G ......................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... R T R R I S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ......................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE - Myxococcus xanthus HSP 1 e-value: 1.0E-6 bit: 55.8 Len: 168 Query Start:382 Query End:549 Subject Strand: null Subject Start: 266 Subject End: 322 ............................................................................................................................................................................................................................................................................................................................................................................................. C I N E S A N A R G E A V C V L G A L P L P R S L T R C A R S F G C G E R Y Q L - T Q R R * Y G Y P Q N Q G I T Q ...................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................. C I R D P A T A R S E A V W V L V A L P L L R S R T R C V R S V G C G G A V S A H S P G R P Y G D P Q P Q G M A Q ...................................................................................................................................................................... tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 164 End: 286 ................................................................................................................................................................... M X X X T K H G N R R P F M L L L R S Q T F C S S S R F T F A R V S V I H S A N Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 334 End: 477 ............................................................................................................................................................................................................................................................................................................................................. M M R T R G Q D P T L P E C S F L R Y P L I L W I T V L P P L S E L I P L A A A E R P S A A S Q .............................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 530 End: 712 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A D S L M Q S L H A C R S T L E D P P V L G W S P R S G N S Y D P S V L E S P V N L V N N P S A I F C S C V N K X X X ... Protein_Len: 33 Strand: - Start: 614 End: 712 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S V A I V G T H Q F A G H I E Y V I W G S N E A A T H V F X X X M ... Protein_Len: 43 Strand: - Start: 477 End: 605 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ H A L F R F L A W Y A F R R E G R T P R N M L A S S A H R C T S E L P D G Q A L I T M .............................................................................................................. Protein_Len: 60 Strand: - Start: 418 End: 621 ................................................................................................................................................................................................................................................................................................................................................................................................................................. E G C G F S R A C R T L S R P L P L A G L V C V A E G R A N A S E N I C L K C A Q L D V R S S G G T S P H D G L D P F M .............................................................................................. Protein_Len: 60 Strand: - Start: 338 End: 538 ................................................................................................................................................................................................................................................................................................................................................. L A A R I N K G A N D G S E T S L R I V A K S H A S V A R R L R V V S R L S D T L S S A S S R G I R L G G R G A R Q G M ................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 274 End: 390 ................................................................................................................................................................................................................................................................................. E A L W Y P L G A L K A P D E V V P A R D H A G T A L V W R Q G F T R E Q T M ..................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 164 End: 286 ................................................................................................................................................................... N X X X R F V S V S S W E H Q Q E P R L R K A A A T A E R E S A Y R H N M R S V M ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: - Start: 160 End: 270 ............................................................................................................................................................... N I L X X V F C P F R L G N M N N S L D C V N Q L L L R K V N A R T D T M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 50 Strand: - Start: 12 End: 161 ........... S L T L Y V A D P M N T L D F L L S T T F S V V G T Y S S L A Y F N M R P C K Y L T S C V V X X X M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -12.4 Tail_Score: -3.22409 Start: 295 End: 313 Full_Region: tcctgtcgttgagga ccccgcta agc tggcgggg ttgccttactggtta ......................................................................................................................................................................................................................................................................................................ccccgctaagctggcgggg.................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SMT_1978:SMT_1979|SMT_1978:SMT_1979:hypothetical protein:possible cell surface protein:<-<-:1909657..1910371 715 tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaannnnntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaagannnnnttaattaa Intra-Species Hit: Count: 1 Min: 1 Max: 702 Len: 702 Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 4.0E-81 bit: 303.0 Len: 168 Query Start:1 Query End:168 Subject Strand: POSITIVE Subject Start: 1 Subject End: 168 tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tccaaattttaagagagtgtcagatagacagcatctggcatattagttagatcaaaaagtaaactagtggtgaaggaaactaccccagtataactagatagggcatagaaattcatccgagggcacttgtaaagtgtagaacaaactaccannnnnttaattaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-25 bit: 117.0 Len: 59 Query Start:644 Query End:702 Subject Strand: POSITIVE Subject Start: 644 Subject End: 702 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaaga............. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agccccgtgaatctcgtaaacaatccatccgctattttctgcagctgtgtgaacaaaga............. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCAAAUUUUAAGAGAGUGUCAGAUAGACAGCAUCUGGCAUAUUAGUUAGAUCAAAAAGUAAACUAGUGGUGAAGGAAACUACCCCAGUAUAACUAGAUAGGGCAUAGAAAUUCAUCCGAGGGCACUUGUAAAGUGUAGAACAAACUACCANNNNNUUAAUUAAUUAANNNNNUUACGAAACACGGAAACCGAAGACCAUUCAUGUUGUUGCUCAGGUCGCAGACGUUUUGCAGCAGCAGUCGCUUCACGUUCGCUCGCGUAUCGGUGAUUCAUUCUGCUAACCAGUAAGGCAACCCCGCCAGCUUAGCGGGGUCCUCAACGACAGGAGCACGAUCAUGCGCACCCGUGGCCAGGACCCAACGCUGCCCGAAUGUUCUUUCCUGCGUUAUCCCCUGAUUCUGUGGAUAACCGUAUUACCGCCUUUGAGUGAGCUGAUACCGCUCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCCCAAUACGCAAACCGCCUCUCCCCGCGCGUUGGCCGAUUCAUUAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGCCCCGUGAAUCUCGUAAACAAUCCAUCCGCUAUUUUCUGCAGCUGUGUGAACAAAGA ................((.(((.((((...((.((((((......))))))......((.(((.((((((....(((......(((.((........)).)))....((.(((((..((.((((.........(((..((((..........................................(....).((((........(((((((((..(.(((...))).)...)))))))))....))))..))))....((((((.((((.(((.(((((((..((.....(((......))).(((((...(((((((...(.((.((.((.(......).)).)).)).)..)))))))..(((((((((..(((((....(((((((((((.(.......).))))))).................((((((.......)))))).))))..)))))..)).).))))))......)))))..)).))))))))))))))..))))))....))).....((.(((((((((............(((((.((......)))))))(((((..(((((..((((..((((...))))..))))..)))))...(....).....)))))))))))))).))...))))))))))).))........)))..)))))).)))))))..)))).)))))..... (-204.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUUUGUUCACACAGCUGCAGAAAAUAGCGGAUGGAUUGUUUACGAGAUUCACGGGGCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUAAUGAAUCGGCCAACGCGCGGGGAGAGGCGGUUUGCGUAUUGGGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGAGCGGUAUCAGCUCACUCAAAGGCGGUAAUACGGUUAUCCACAGAAUCAGGGGAUAACGCAGGAAAGAACAUUCGGGCAGCGUUGGGUCCUGGCCACGGGUGCGCAUGAUCGUGCUCCUGUCGUUGAGGACCCCGCUAAGCUGGCGGGGUUGCCUUACUGGUUAGCAGAAUGAAUCACCGAUACGCGAGCGAACGUGAAGCGACUGCUGCUGCAAAACGUCUGCGACCUGAGCAACAACAUGAAUGGUCUUCGGUUUCCGUGUUUCGUAANNNNNUUAAUUAAUUAANNNNNUGGUAGUUUGUUCUACACUUUACAAGUGCCCUCGGAUGAAUUUCUAUGCCCUAUCUAGUUAUACUGGGGUAGUUUCCUUCACCACUAGUUUACUUUUUGAUCUAACUAAUAUGCCAGAUGCUGUCUAUCUGACACUCUCUUAAAAUUUGGA (((..(((.....((.((((((..((((((..(((.....((((((((..(((((.(((....)))..((((((((((((((..(..((((..(((((.......)))))..))))..)........((((((...(((((((......)).))))).................(.(((((((..(((((...((((.....))))....)))))))))))).)..)))))))))..((((((((((.((..((((((.((((((....((((((.......((((......(((((((.(........))))))))...........(((((....((((..((((((((((.(((((.((((......)))).))))).))).)))))))))))..((((((.((.........)).)))))).)))))....))))...((....))...))).))).))))))))))))...))...)))))).))))..........)))).)))))))..))))))))))))).........................(((((...((..((((.....)))).....((.((((......(((((((...........)))))))......))))))...............))...))))).....)))..))))))...)))).)))).......)))..))) (-226.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1223 490 441 218 169 smit:SMT_1982|5end_conserved_hypothetical_protein_1913036..1913266_POSITIVE 1223 490 441 206 157 smit:SMT_1691|5end_putative_deoxyribonuclease_1674978..1675208_POSITIVE 1223 490 441 231 182 smit:SMT_1156|5end_K07485_transposase_1099938..1100168_POSITIVE 1200 530 481 209 160 smit:SMT_325|5end_K02029_polar_amino_acid_transport_system_permease_protein_263023..263253_NEGATIVE 1197 500 451 201 152 smit:SMT_1972|5end_uncharacterized_conserved_phage_related_protein_1903662..1903892_POSITIVE 1166 540 491 186 137 smit:SMT_1986|5end_mercuric_reductase_1914843..1915073_POSITIVE 1125 260 211 209 160 smit:SMT_1945|5end_putative_dihydrolipoamide_S-acetyltransferase_1879961..1880191_POSITIVE 1023 600 551 193 144 smit:SMT_959|5end_1-acyl-sn-glycerol-3-phosphate_acyltransferase_905283..905513_POSITIVE 946 580 534 230 184 smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE 938 130 81 221 172 smit:SMT_1978|5end_hypothetical_protein_1909566..1909796_NEGATIVE 909 320 271 228 179 smit:SMT_1888|5end_K02026_multiple_sugar_transport_system_permease_protein_1842088..1842318_POSITIVE 775 539 500 230 192 smit:SMT_2045|5end_K+_transport_system,_NAD-binding_component_1956139..1956369_POSITIVE 654 610 579 231 200 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 459 269 222 63 3 smit:SMT_913|5end_putative_sucrose-specific_PTS_permease,_enzyme_II_865809..866039_NEGATIVE 432 622 595 231 204 smit:SMT_712|5end_alcohol_dehydrogenase,_zinc-containing_620381..620611_NEGATIVE 416 648 601 200 147 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 413 499 451 133 88 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 397 645 624 178 157 smit:SMT_1671|5end_hypothetical_protein_1659757..1659987_NEGATIVE 395 440 419 231 210 smit:SMT_2009|5end_GtrA_family_protein_1928973..1929203_POSITIVE 389 528 481 208 160 smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1109 570 521 50 1 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 1109 570 521 50 1 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 1109 570 521 55 6 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 1109 570 521 50 1 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 1109 570 521 50 1 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 1109 570 521 50 1 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 1109 570 521 55 6 smit:SMT_1852|3end_1,4-alpha-glucan_branching_enzyme_1816467..1816617_NEGATIVE 1109 570 521 55 6 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 1101 600 551 69 20 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 1101 600 551 69 20 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 1101 600 551 69 20 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 1101 600 551 69 20 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 1101 600 551 69 20 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 1024 640 591 52 3 smit:SMT_2030|3end_chromosomal_replication_initiator_protein_DnaA_1944790..1944940_NEGATIVE 1024 640 591 56 7 smit:SMT_479|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_415604..415754_NEGATIVE 1023 600 551 69 20 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 973 640 593 48 1 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE 855 640 595 125 80 smit:SMT_713|3end_heat_shock_protein_HtpX_620505..620655_NEGATIVE 764 646 608 39 1 smit:SMT_1857|3end_hypothetical_protein_1821145..1821295_POSITIVE 529 654 619 35 1 smit:SMT_1928|3end_O-methyltransferase_family_protein_1869158..1869308_NEGATIVE