Origin IGS: gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataagattataagtgaaggagtgtgac Mask Tandem Repeat Region ================================================ gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Find is-nt database================================================ Query_seq: SMT_1963:SMT_1964|SMT_1963:SMT_1964:ribonuclease BN, putative:sodium/hydrogen exchanger family protein:<-<-:1896553..1896685 133 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1963:SMT_1964|SMT_1963:SMT_1964:ribonuclease BN, putative:sodium/hydrogen exchanger family protein:<-<-:1896553..1896685 133 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1963:SMT_1964|SMT_1963:SMT_1964:ribonuclease BN, putative:sodium/hydrogen exchanger family protein:<-<-:1896553..1896685 133 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: - Start: 5 End: 130 .... * V G E S I I K Y E X F I L S C V L F S A A P Q V Q T R Y P S A S T T Q I Q N E F L M ... gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1963:SMT_1964|SMT_1963:SMT_1964:ribonuclease BN, putative:sodium/hydrogen exchanger family protein:<-<-:1896553..1896685 133 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Intra-Species Hit: Count: 39 Min: 1 Max: 133 Len: 133 Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 4.0E-69 bit: 261.0 Len: 133 Query Start:1 Query End:133 Subject Strand: POSITIVE Subject Start: 1 Subject End: 133 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 3.0E-55 bit: 215.0 Len: 114 Query Start:20 Query End:133 Subject Strand: POSITIVE Subject Start: 15 Subject End: 128 ...................aatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa ...................aatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 3.0E-55 bit: 215.0 Len: 110 Query Start:23 Query End:132 Subject Strand: NEGATIVE Subject Start: 222 Subject End: 331 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. ......................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 4.0E-51 bit: 201.0 Len: 103 Query Start:30 Query End:132 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 114 .............................tcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .............................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 4.0E-51 bit: 201.0 Len: 103 Query Start:30 Query End:132 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 114 .............................tcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .............................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 4.0E-51 bit: 201.0 Len: 103 Query Start:30 Query End:132 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 .............................tcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .............................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 6.0E-50 bit: 197.0 Len: 109 Query Start:21 Query End:129 Subject Strand: POSITIVE Subject Start: 554 Subject End: 662 ....................atcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ....................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 3.0E-49 bit: 195.0 Len: 104 Query Start:27 Query End:130 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 1.0E-48 bit: 193.0 Len: 111 Query Start:23 Query End:133 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 114 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa ......................cttatactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 4.0E-48 bit: 191.0 Len: 106 Query Start:24 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-48 bit: 191.0 Len: 110 Query Start:24 Query End:133 Subject Strand: POSITIVE Subject Start: 97 Subject End: 206 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 4.0E-48 bit: 191.0 Len: 110 Query Start:24 Query End:133 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 258 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 2.0E-47 bit: 189.0 Len: 109 Query Start:24 Query End:132 Subject Strand: POSITIVE Subject Start: 73 Subject End: 181 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta. Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 1.0E-45 bit: 183.0 Len: 106 Query Start:24 Query End:129 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 155 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-45 bit: 183.0 Len: 110 Query Start:24 Query End:133 Subject Strand: NEGATIVE Subject Start: 101 Subject End: 210 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 4.0E-45 bit: 181.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 295 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 4.0E-45 bit: 181.0 Len: 109 Query Start:23 Query End:131 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 212 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatt.. ......................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtatt.. Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 2.0E-44 bit: 179.0 Len: 108 Query Start:22 Query End:129 Subject Strand: POSITIVE Subject Start: 102 Subject End: 209 .....................tcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .....................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-44 bit: 179.0 Len: 108 Query Start:22 Query End:129 Subject Strand: POSITIVE Subject Start: 74 Subject End: 181 .....................tcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .....................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 3.0E-43 bit: 175.0 Len: 106 Query Start:24 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 158 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagcatta. Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 4.0E-42 bit: 171.0 Len: 104 Query Start:26 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .........................atactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta.... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 3.0E-40 bit: 165.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 280 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtat... Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 3.0E-40 bit: 165.0 Len: 109 Query Start:24 Query End:132 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 142 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatgctcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagaatta. Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 4.0E-39 bit: 161.0 Len: 107 Query Start:23 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ......................cttatactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 6.0E-38 bit: 157.0 Len: 105 Query Start:26 Query End:130 Subject Strand: POSITIVE Subject Start: 45 Subject End: 148 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 6.0E-38 bit: 157.0 Len: 109 Query Start:24 Query End:132 Subject Strand: POSITIVE Subject Start: 112 Subject End: 219 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagtatta. Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 3.0E-37 bit: 155.0 Len: 104 Query Start:26 Query End:129 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 122 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta.... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 1.0E-36 bit: 153.0 Len: 107 Query Start:23 Query End:129 Subject Strand: POSITIVE Subject Start: 122 Subject End: 227 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ......................cttatactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 4.0E-36 bit: 151.0 Len: 106 Query Start:24 Query End:129 Subject Strand: POSITIVE Subject Start: 50 Subject End: 154 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta.... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 3.0E-28 bit: 126.0 Len: 105 Query Start:26 Query End:130 Subject Strand: POSITIVE Subject Start: 257 Subject End: 360 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtat... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 6.0E-23 bit: 108.0 Len: 104 Query Start:27 Query End:130 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... ..........................tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagtat... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 4.0E-21 bit: 102.0 Len: 51 Query Start:82 Query End:132 Subject Strand: POSITIVE Subject Start: 136 Subject End: 186 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. HSP 2 e-value: 4.0E-9 bit: 62.3 Len: 45 Query Start:26 Query End:70 Subject Strand: POSITIVE Subject Start: 33 Subject End: 77 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaaaagcaaactatgaagctacccgcagg............................................................... Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 6.0E-20 bit: 98.1 Len: 51 Query Start:23 Query End:73 Subject Strand: POSITIVE Subject Start: 65 Subject End: 115 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ......................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 1.0E-9 bit: 64.2 Len: 52 Query Start:82 Query End:133 Subject Strand: POSITIVE Subject Start: 216 Subject End: 266 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcaacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 4.0E-15 bit: 82.2 Len: 49 Query Start:82 Query End:130 Subject Strand: POSITIVE Subject Start: 116 Subject End: 164 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat... HSP 2 e-value: 2.0E-13 bit: 76.2 Len: 48 Query Start:26 Query End:73 Subject Strand: POSITIVE Subject Start: 14 Subject End: 61 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .........................atactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................ Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 2.0E-14 bit: 80.2 Len: 110 Query Start:24 Query End:133 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 254 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactaaatgaaaatcaaaaagcaaactaggaagctagtcgcaagctgtgctgaagtacagtgaggcgacattgacgtagtttgaa-gagattttcgaaaagtattaa Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 6.0E-14 bit: 78.2 Len: 45 Query Start:26 Query End:70 Subject Strand: POSITIVE Subject Start: 158 Subject End: 202 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaagaccaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-11 bit: 70.2 Len: 35 Query Start:96 Query End:130 Subject Strand: POSITIVE Subject Start: 237 Subject End: 271 ...............................................................................................gctgacgtggtttgaatttgattttcgaagagtat... ...............................................................................................gctgacgtggtttgaatttgattttcgaagagtat... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 2.0E-13 bit: 76.2 Len: 40 Query Start:27 Query End:66 Subject Strand: POSITIVE Subject Start: 152 Subject End: 191 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccg................................................................... ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccg................................................................... HSP 2 e-value: 4.0E-12 bit: 72.2 Len: 48 Query Start:82 Query End:129 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .................................................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta.... Subject: smit_SMT_319_SMT_320|K02356 elongation factor EF-P:alcohol dehydrogenase, zinc-containing|NEGATIVE:NEGATIVE|[258955,259330]|376 HSP 1 e-value: 2.0E-11 bit: 70.2 Len: 45 Query Start:26 Query End:70 Subject Strand: POSITIVE Subject Start: 161 Subject End: 205 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatggaaatcaaagagcaaactaggaagcaagccgcagg............................................................... HSP 2 e-value: 1.0E-6 bit: 54.3 Len: 51 Query Start:82 Query End:132 Subject Strand: POSITIVE Subject Start: 264 Subject End: 313 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaacgtgacgctgacgtggtttgaa-gagattttcgaagagtatta. Inter-species Hit: Count: 54 Min: 1 Max: 133 Len: 133 Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 6.0E-50 bit: 197.0 Len: 105 Query Start:26 Query End:130 Subject Strand: POSITIVE Subject Start: 189 Subject End: 293 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 4.0E-48 bit: 191.0 Len: 106 Query Start:24 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta.... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 4.0E-48 bit: 191.0 Len: 106 Query Start:24 Query End:129 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta.... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 6.0E-47 bit: 187.0 Len: 104 Query Start:27 Query End:130 Subject Strand: POSITIVE Subject Start: 69 Subject End: 172 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagtat... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 4.0E-45 bit: 181.0 Len: 105 Query Start:26 Query End:130 Subject Strand: POSITIVE Subject Start: 10 Subject End: 114 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 2.0E-44 bit: 179.0 Len: 108 Query Start:25 Query End:132 Subject Strand: POSITIVE Subject Start: 115 Subject End: 222 ........................tatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. ........................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagtatta. Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 3.0E-43 bit: 175.0 Len: 106 Query Start:24 Query End:129 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta.... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 3.0E-43 bit: 175.0 Len: 106 Query Start:24 Query End:129 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta.... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: POSITIVE Subject Start: 85 Subject End: 193 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 113 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: POSITIVE Subject Start: 52 Subject End: 160 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 113 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 1.0E-42 bit: 173.0 Len: 109 Query Start:24 Query End:132 Subject Strand: POSITIVE Subject Start: 91 Subject End: 199 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .......................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta. Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 1.0E-39 bit: 163.0 Len: 104 Query Start:27 Query End:130 Subject Strand: NEGATIVE Subject Start: 47 Subject End: 149 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 2.0E-35 bit: 149.0 Len: 105 Query Start:26 Query End:130 Subject Strand: POSITIVE Subject Start: 10 Subject End: 113 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 1.0E-33 bit: 143.0 Len: 110 Query Start:24 Query End:133 Subject Strand: POSITIVE Subject Start: 218 Subject End: 326 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaagcgagccgcaggctgtacttgagtacggtaaagcaaagctgacgtggtttgaa-gagattttcaaagagtattaa Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 4.0E-33 bit: 141.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 4.0E-33 bit: 141.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat... Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 3.0E-31 bit: 135.0 Len: 110 Query Start:24 Query End:133 Subject Strand: POSITIVE Subject Start: 208 Subject End: 316 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtattaa Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 3.0E-31 bit: 135.0 Len: 110 Query Start:24 Query End:133 Subject Strand: POSITIVE Subject Start: 208 Subject End: 316 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .......................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtattaa Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 1.0E-30 bit: 133.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagtat... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 1.0E-30 bit: 133.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagtat... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 1.0E-30 bit: 133.0 Len: 105 Query Start:26 Query End:130 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .........................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagtat... Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 6.0E-26 bit: 118.0 Len: 73 Query Start:1 Query End:73 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 178 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ gtcatactccttcacttataatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................ HSP 2 e-value: 4.0E-12 bit: 72.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 2.0E-23 bit: 110.0 Len: 73 Query Start:1 Query End:73 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 178 gtcacactccttcacttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ gtcatactccttcatttataatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................ HSP 2 e-value: 4.0E-12 bit: 72.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 2.0E-19 bit: 96.1 Len: 50 Query Start:24 Query End:73 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 4.0E-9 bit: 62.3 Len: 51 Query Start:82 Query End:132 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 2.0E-19 bit: 96.1 Len: 50 Query Start:24 Query End:73 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 4.0E-9 bit: 62.3 Len: 51 Query Start:82 Query End:132 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 2.0E-19 bit: 96.1 Len: 58 Query Start:16 Query End:73 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 163 ...............ttataatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ...............ttataatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................ HSP 2 e-value: 4.0E-12 bit: 72.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 2.0E-19 bit: 96.1 Len: 50 Query Start:24 Query End:73 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 228 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 4.0E-9 bit: 62.3 Len: 51 Query Start:82 Query End:132 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_008533_SPD_0549_SPD_0550|lipoprotein, putative:ribosomal protein L11|POSITIVE:POSITIVE|[561971,562278]|308 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:27 Query End:73 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 6.0E-8 bit: 58.3 Len: 45 Query Start:85 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ....................................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ....................................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:24 Query End:70 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 319 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-11 bit: 70.2 Len: 51 Query Start:82 Query End:132 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 169 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003098_spr0696_spr0697|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[698465,698791]|327 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:24 Query End:70 Subject Strand: POSITIVE Subject Start: 41 Subject End: 87 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-7 bit: 56.3 Len: 52 Query Start:82 Query End:133 Subject Strand: POSITIVE Subject Start: 191 Subject End: 241 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtagggcgacgatgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_003098_spr0554_spr0555|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[554441,554748]|308 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:27 Query End:73 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 6.0E-8 bit: 58.3 Len: 45 Query Start:85 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ....................................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ....................................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:24 Query End:70 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 319 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-11 bit: 70.2 Len: 51 Query Start:82 Query End:132 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 169 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:24 Query End:70 Subject Strand: POSITIVE Subject Start: 41 Subject End: 87 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 1.0E-9 bit: 64.2 Len: 52 Query Start:82 Query End:133 Subject Strand: POSITIVE Subject Start: 326 Subject End: 376 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtagggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_003028_SP_0629_SP_0630|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[596487,596794]|308 HSP 1 e-value: 2.0E-17 bit: 90.1 Len: 47 Query Start:27 Query End:73 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ..........................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ HSP 2 e-value: 6.0E-8 bit: 58.3 Len: 45 Query Start:85 Query End:129 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ....................................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ....................................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 6.0E-17 bit: 88.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 542 Subject End: 593 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattaa HSP 2 e-value: 2.0E-13 bit: 76.2 Len: 48 Query Start:26 Query End:73 Subject Strand: NEGATIVE Subject Start: 648 Subject End: 695 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgtaggctg............................................................ Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 105 Query Start:25 Query End:129 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ........................tatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ........................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta.... Subject: NC_008533_SPD_0790_SPD_0791|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[809280,810395]|1116 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 45 Query Start:26 Query End:70 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 251 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-10 bit: 66.2 Len: 49 Query Start:82 Query End:130 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 53 Query Start:21 Query End:73 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 211 ....................atcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ....................atcttatactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................ HSP 2 e-value: 2.0E-14 bit: 80.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 102 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 105 Query Start:25 Query End:129 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ........................tatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... ........................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta.... Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 45 Query Start:26 Query End:70 Subject Strand: POSITIVE Subject Start: 377 Subject End: 421 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 6.0E-8 bit: 58.3 Len: 45 Query Start:86 Query End:130 Subject Strand: POSITIVE Subject Start: 484 Subject End: 527 .....................................................................................gtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .....................................................................................gtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_003098_spr0797_spr0798|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[801749,802864]|1116 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 45 Query Start:26 Query End:70 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 251 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-10 bit: 66.2 Len: 49 Query Start:82 Query End:130 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_003028_SP_0897_SP_0899|pyruvate kinase:hypothetical protein|POSITIVE:POSITIVE|[852843,854645]|1803 HSP 1 e-value: 2.0E-16 bit: 86.2 Len: 45 Query Start:26 Query End:70 Subject Strand: NEGATIVE Subject Start: 203 Subject End: 247 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 2.0E-10 bit: 66.2 Len: 49 Query Start:82 Query End:130 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 145 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 1.0E-15 bit: 84.2 Len: 48 Query Start:26 Query End:73 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2010 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .........................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg............................................................ HSP 2 e-value: 4.0E-15 bit: 82.2 Len: 49 Query Start:82 Query End:130 Subject Strand: NEGATIVE Subject Start: 1860 Subject End: 1908 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 1.0E-15 bit: 84.2 Len: 48 Query Start:23 Query End:70 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 217 ......................cttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... ......................cttatactcaatgaaaatcaaagagcaaactaggaagctaaccgcagg............................................................... HSP 2 e-value: 4.0E-12 bit: 72.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 65 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 1.0E-15 bit: 84.2 Len: 44 Query Start:26 Query End:69 Subject Strand: POSITIVE Subject Start: 260 Subject End: 303 .........................atactcmatgaaaatcaaagagcaaactaggaagctagccgcag................................................................ .........................atactcaatgaaaatcaaagagcaaactaggaagctagccgcag................................................................ HSP 2 e-value: 2.0E-10 bit: 66.2 Len: 49 Query Start:82 Query End:130 Subject Strand: POSITIVE Subject Start: 406 Subject End: 453 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat... Subject: NC_003098_spr1922_spr1923|Maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[1905655,1905945]|291 HSP 1 e-value: 4.0E-15 bit: 82.2 Len: 47 Query Start:24 Query End:70 Subject Strand: POSITIVE Subject Start: 133 Subject End: 179 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaatcaaagtgcaaactaggaagctagccgcagg............................................................... HSP 2 e-value: 1.0E-9 bit: 64.2 Len: 52 Query Start:82 Query End:133 Subject Strand: POSITIVE Subject Start: 238 Subject End: 288 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaaaagtattaa Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 4.0E-15 bit: 82.2 Len: 43 Query Start:24 Query End:66 Subject Strand: POSITIVE Subject Start: 114 Subject End: 156 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccg................................................................... .......................ttatactcaatgaaaatcaaagagcaaactaggaagctagccg................................................................... HSP 2 e-value: 1.0E-6 bit: 54.3 Len: 51 Query Start:82 Query End:132 Subject Strand: POSITIVE Subject Start: 264 Subject End: 313 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. .................................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 2.0E-14 bit: 80.2 Len: 52 Query Start:82 Query End:133 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 102 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa .................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa HSP 2 e-value: 6.0E-14 bit: 78.2 Len: 53 Query Start:21 Query End:73 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 211 ....................atcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ ....................atcttatactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................ Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 1.0E-12 bit: 74.2 Len: 47 Query Start:24 Query End:70 Subject Strand: NEGATIVE Subject Start: 491 Subject End: 537 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... .......................ttatactcaatgaaaaccaaagagcaaactaggaaactagccgcagg............................................................... HSP 2 e-value: 4.0E-6 bit: 52.3 Len: 50 Query Start:83 Query End:132 Subject Strand: NEGATIVE Subject Start: 338 Subject End: 386 ..................................................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. ..................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_008533_SPD_1528_SPD_1530|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:POSITIVE|[1550754,1552061]|1308 HSP 1 e-value: 4.0E-12 bit: 72.2 Len: 50 Query Start:24 Query End:73 Subject Strand: POSITIVE Subject Start: 113 Subject End: 162 .......................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................ .......................ttatactcaatgaaaagcaaagagcgaactaggaagctagccgtaggctg............................................................ HSP 2 e-value: 4.0E-6 bit: 52.3 Len: 50 Query Start:83 Query End:132 Subject Strand: POSITIVE Subject Start: 264 Subject End: 312 ..................................................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta. ..................................................................................acggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtatta. Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 4.0E-12 bit: 72.2 Len: 50 Query Start:21 Query End:70 Subject Strand: POSITIVE Subject Start: 86 Subject End: 135 ....................atcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcagg............................................................... ....................atctaatactcaataaaaatcaaagagcaaactaggaaactagccgcagg............................................................... HSP 2 e-value: 2.0E-7 bit: 56.3 Len: 48 Query Start:82 Query End:129 Subject Strand: POSITIVE Subject Start: 374 Subject End: 420 .................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta.... .................................................................................tacggcaaggcgacgctgacgtggtttgaa-gagattttcgaagagta.... Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 2.0E-11 bit: 70.2 Len: 43 Query Start:88 Query End:130 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 147 .......................................................................................aaggcgacgctgacgtggtttgaatttgattttcgaagagtat... .......................................................................................aaggcgacgttgacgtggtttgaattggattttcgaagagtat... HSP 2 e-value: 1.0E-6 bit: 54.3 Len: 41 Query Start:27 Query End:67 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 ..........................tactcmatgaaaatcaaagagcaaactaggaagctagccgc.................................................................. ..........................tactcaatgaaaatcaaagaacaaactaggtaactagccgc.................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUCACACUCCUUCACUUAUAAUCUUAUACUCMAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGCUGUACUUGAGUACGGUAAGGCGACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUAA .........................((((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))))))... (-44.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUCGCCUUACCGUACUCAAGUACAGCCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUKGAGUAUAAGAUUAUAAGUGAAGGAGUGUGAC ...((((((((.((((((((((..(((((...(..((((((((....(.((((....)))).)...)))))..)))..)..)))))...)))))))))).....(((......)))......))))))))... (-32.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1078 100 51 191 142 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 1078 100 51 178 129 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 998 100 51 226 177 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 983 110 61 202 153 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 983 110 61 227 178 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 979 110 61 211 162 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 964 100 51 204 155 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 958 90 41 230 181 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 912 90 41 179 130 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 895 88 41 231 184 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 831 130 81 53 4 smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE 761 70 22 216 163 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 718 70 22 149 100 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 716 70 22 159 111 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 669 130 82 85 38 smit:SMT_958|5end_hypothetical_protein_predicted_by_Glimmer/Critica_905052..905282_POSITIVE 662 70 26 191 148 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 646 70 24 230 184 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 638 70 22 168 120 smit:SMT_1544|5end_mevalonate_kinase_1528884..1529114_NEGATIVE 635 130 82 220 173 smit:SMT_677|5end_DNA_topoisomerase_I_587318..587548_NEGATIVE 621 70 26 156 112 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1050 100 51 61 12 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 1049 100 51 62 13 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 1021 100 51 62 13 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 1020 100 51 57 8 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 1007 110 63 48 1 smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE 998 100 51 61 12 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 983 110 61 72 23 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 983 110 61 71 22 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 962 90 42 49 1 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 957 110 61 71 22 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 957 110 61 71 22 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 923 110 61 53 4 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 920 100 51 54 5 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 909 90 41 51 2 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 785 130 82 91 43 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 710 127 81 52 6 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 705 130 83 47 1 smit:SMT_1872|3end_K03217_preprotein_translocase_YidC_subunit_1830883..1831033_NEGATIVE 676 130 81 65 7 smit:SMT_1815|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1788899..1789049_NEGATIVE 662 70 26 109 66 smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE 657 128 82 90 45 smit:SMT_1216|3end_hypothetical_protein_1175969..1176119_POSITIVE