Origin IGS: aagatggaaaaattacagtcttttctctcacagagagcttgtggttgctggaaacaagcagagaaaactgtaaggttgggtccatctgaaacaagagaaaaaaacataattctcaagggagtgccctttatcgcacagcctgttacaggaaatatctgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcttctataggactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctgggcgtatagcgnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttgggaaagcagagaagattttatcccacactaacmattgcaggaattgttggtgacagcataactctttatytytatatgaggtattaagattggatacccannnnnttaattaattaannnnncgctatacgcccagaattcgagctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagtcctatagaagcatatttgcttctataggataccactatggcgggaaatatcttttaaaagctcacttcgttcgcaaattttttgtagcaatctatttaataatgaacaataatctaaaactaaacagctgaacctataatagacatataaaaatccccacgcaaaataacttgcgtgaggacgaaattcgcggtgccacctcaattataggatttctcctatctctcattcctgtctcagatatttcctgtaacaggctgtgcgataaagggcactcccttgagaattatgtttttttctcttgtttcagatggacccaaccttacagttttctctgcttgtttccagcaaccacaagctctctgtgagagaaaagactgtaatttttccatctt Mask Tandem Repeat Region ================================================ aagatggaaaaattacagtcttttctctcacagagagcttgtggttgctggaaacaagcagagaaaactgtaaggttgggtccatctgaaacaagagaaaaaaacataattctcaagggagtgccctttatcgcacagcctgttacaggaaatatctgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcttctataggactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctgggcgtatagcgnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Find is-nt database================================================ Query_seq: SMT_1958:SMT_1959|SMT_1958:SMT_1959:tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica:->->:1892113..1892724 612 aagatggaaaaattacagtcttttctctcacagagagcttgtggttgctggaaacaagcagagaaaactgtaaggttgggtccatctgaaacaagagaaaaaaacataattctcaagggagtgccctttatcgcacagcctgttacaggaaatatctgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcttctataggactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctgggcgtatagcgnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1958:SMT_1959|SMT_1958:SMT_1959:tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica:->->:1892113..1892724 612 aagatggaaaaattacagtcttttctctcacagagagcttgtggttgctggaaacaagcagagaaaactgtaaggttgggtccatctgaaacaagagaaaaaaacataattctcaagggagtgccctttatcgcacagcctgttacaggaaatatctgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcttctataggactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctgggcgtatagcgnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1958:SMT_1959|SMT_1958:SMT_1959:tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica:->->:1892113..1892724 612 aagatggaaaaattacagtcttttctctcacagagagcttgtggttgctggaaacaagcagagaaaactgtaaggttgggtccatctgaaacaagagaaaaaaacataattctcaagggagtgccctttatcgcacagcctgttacaggaaatatctgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcttctataggactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagactcaggggtaccgagctcgaattctgggcgtatagcgnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 3 Max: 156 Len: 154 Subject: UniRef90_Q04IY3 Cluster: Hypothetical protein; n=2; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 1.0E-18 bit: 95.1 Len: 153 Query Start:4 Query End:156 Subject Strand: null Subject Start: 1 Subject End: 51 ... M E K L Q S F L S Q R A C G C W K Q A E K T V R L G P S E T R E K N I I L K G V P F I A Q P V T G N I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ... M E K L Q F F L S Q R A C G C W K Q A E K A V K L G S S E T R E E N I I L K G V P F I A Q P V T G D I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q97P26 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae HSP 1 e-value: 8.0E-11 bit: 69.3 Len: 114 Query Start:3 Query End:116 Subject Strand: null Subject Start: 1 Subject End: 38 .. L R I M F F S L V S D G P N L T V F S A C F Q Q P Q A L C E R K D C N F S I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .. M R M M F S S L V S D E P N F T A F S A C F Q Q P Q A L C E R K N C N F S I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Predict ORF larger than 30AA ================================================ Protein_Len: 51 Strand: + Start: 4 End: 156 ... M E K L Q S F L S Q R A C G C W K Q A E K T V R L G P S E T R E K N I I L K G V P F I A Q P V T G N I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 140 End: 259 ........................................................................................................................................... M L Q E I S E T G M R D R R N P I I E V A P R I S S S R K L F C V G I F I C L L ................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 192 End: 371 ............................................................................................................................................................................................... M R W H R E F R P H A S Y F A W G F L Y V Y Y R F S C L V L D Y C S L L N R L L Q K I C E R S E L L K D I S R H S G I L ................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 346 End: 435 ......................................................................................................................................................................................................................................................................................................................................................... M F P A I V V S Y R S K Y A S I G L S S T L D W P S F Y K V ................................................................................................................................................................................. Protein_Len: 40 Strand: + Start: 381 End: 500 ............................................................................................................................................................................................................................................................................................................................................................................................ M C F Y R T F Q H T G L A V V L Q G L V R P R L R G T E L E F W A Y S X X L I N ................................................................................................................ Protein_Len: 35 Strand: - Start: 392 End: 496 ....................................................................................................................................................................................................................................................................................................................................................................................................... L V K W C V P S A T T K C P R T R G L S L P V S S S N Q A Y L X X X M .................................................................................................................... Protein_Len: 32 Strand: - Start: 287 End: 382 .............................................................................................................................................................................................................................................................................................. Q E N N F L N S C F I Q S R L S S K F S I E R W L P I R Y F C M ...................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 268 End: 384 ........................................................................................................................................................................................................................................................................... S N L K L N N N M I L Y I A V F F K R V F H A K L L Y K G G Y H Y G I S A F M .................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 31 End: 249 .............................. Y P Q T W R F C S F F V Y N E L S H G K D C L R N C S I D S V P I L S L L F G I I S T A G R I E D E R L N N Q T P I K M ........................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: - Start: 3 End: 164 .. I S F N C D K R E C L A Q P Q Q F C A S F V T L N P G D S V L S F F M I R L P T G K I A C G T V P F I Q S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: - Start: 2 End: 94 . S P F I V T K E R V S L K H N S S V L L S F Q L T P D M Q F M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -12.8 Tail_Score: -5.08178 Start: 215 End: 242 Full_Region: GCACCGCGAATTTCG TCCTCACGCAAG TTAT TTTGCGTGGGGA TTTTTATATGTCTAT ......................................................................................................................................................................................................................TCCTCACGCAAGTTATTTTGCGTGGGGA.................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 95 HP_score: -13.2 Tail_Score: -3.53444 Start: 366 End: 397 Full_Region: TCCCGCCATAGTGGT ATCCTATAGAAGCA AATA TGCTTCTATAGGAC TTTCCAGCACACTGG .............................................................................................................................................................................................................................................................................................................................................................................ATCCTATAGAAGCAAATATGCTTCTATAGGAC....................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -16.7 Tail_Score: -2.71924 Start: 367 End: 396 Full_Region: CCCGCCATAGTGGTA TCCTATAGAAGCA AATA TGCTTCTATAGGA CTTTCCAGCACACTG ..............................................................................................................................................................................................................................................................................................................................................................................TCCTATAGAAGCAAATATGCTTCTATAGGA........................................................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_1958:SMT_1959|SMT_1958:SMT_1959:tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica:->->:1892113..1892724 612 aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Intra-Species Hit: Count: 2 Min: 157 Max: 612 Len: 456 Subject: smit_SMT_1958_SMT_1959|tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1892113,1892724]|612 HSP 1 e-value: 1.0E-128 bit: 459.0 Len: 230 Query Start:157 Query End:386 Subject Strand: POSITIVE Subject Start: 157 Subject End: 386 ............................................................................................................................................................tgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgc.................................................................................................................................................................................................................................. ............................................................................................................................................................tgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgc.................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-50 bit: 199.0 Len: 121 Query Start:492 Query End:612 Subject Strand: POSITIVE Subject Start: 492 Subject End: 612 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaattaattaannnnntgggtatccaatcttaatacctcatatararataaagagttatgctgtcaccaacaattcctgcaatkgttagtgtgggataaaatcttctctgctttcccaag Subject: smit_SMT_362_SMT_363|K02519 translation initiation factor IF-2:K02519 translation initiation factor IF-2|POSITIVE:POSITIVE|[298011,298678]|668 HSP 1 e-value: 1.0E-128 bit: 459.0 Len: 230 Query Start:157 Query End:386 Subject Strand: POSITIVE Subject Start: 226 Subject End: 455 ............................................................................................................................................................tgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgc.................................................................................................................................................................................................................................. ............................................................................................................................................................tgagacaggaatgagagataggagaaatcctataattgaggtggcaccgcgaatttcgtcctcacgcaagttattttgcgtggggatttttatatgtctattataggttcagctgtttagttttagattattgttcattattaaatagattgctacaaaaaatttgcgaacgaagtgagcttttaaaagatatttcccgccatagtggtatcctatagaagcaaatatgc.................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGACAGGAAUGAGAGAUAGGAGAAAUCCUAUAAUUGAGGUGGCACCGCGAAUUUCGUCCUCACGCAAGUUAUUUUGCGUGGGGAUUUUUAUAUGUCUAUUAUAGGUUCAGCUGUUUAGUUUUAGAUUAUUGUUCAUUAUUAAAUAGAUUGCUACAAAAAAUUUGCGAACGAAGUGAGCUUUUAAAAGAUAUUUCCCGCCAUAGUGGUAUCCUAUAGAAGCAAAUAUGCUUCUAUAGGACUUUCCAGCACACUGGACUGGCCGUCGUUUUACAAGGUCUAGUCCGACCUAGACUCAGGGGUACCGAGCUCGAAUUCUGGGCGUAUAGCGNNNNNUUAAUUAAUUAANNNNNUGGGUAUCCAAUCUUAAUACCUCAUAUARARAUAAAGAGUUAUGCUGUCACCAACAAUUCCUGCAAUKGUUAGUGUGGGAUAAAAUCUUCUCUGCUUUCCCAAG ...(.(((((((.....((((((....))))))......((((..(((((.......(((((((((((((....)))))))))))))......((((((.(((.(((((((.(((((((((..(..((....))..)..))))))))).((((............))))......))))))).))).))))))...........))))).(((((((((((((....))))))))))))).....(((((...((((((((((............)).)))))))).....(((((..(((((((..(((((.....)))))..............(((....)))........))))))).......(((.....))).........))))).))))).))))....))))))))...........(((((.................))))).. (-133.33) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUGGGAAAGCAGAGAAGAUUUUAUCCCACACUAACMAUUGCAGGAAUUGUUGGUGACAGCAUAACUCUUUAUYUYUAUAUGAGGUAUUAAGAUUGGAUACCCANNNNNUUAAUUAAUUAANNNNNCGCUAUACGCCCAGAAUUCGAGCUCGGUACCCCUGAGUCUAGGUCGGACUAGACCUUGUAAAACGACGGCCAGUCCAGUGUGCUGGAAAGUCCUAUAGAAGCAUAUUUGCUUCUAUAGGAUACCACUAUGGCGGGAAAUAUCUUUUAAAAGCUCACUUCGUUCGCAAAUUUUUUGUAGCAAUCUAUUUAAUAAUGAACAAUAAUCUAAAACUAAACAGCUGAACCUAUAAUAGACAUAUAAAAAUCCCCACGCAAAAUAACUUGCGUGAGGACGAAAUUCGCGGUGCCACCUCAAUUAUAGGAUUUCUCCUAUCUCUCAUUCCUGUCUCA ..(((((.................)))))...........(((((((((((((....)))))..................((((((.((((...(((....))).....))))....................((((..(((...(((((((.(((....(.((((((......)))))))..)))...)).(.((((.(((((....)))))..((((((((((((((....)))))))))))))).......)))).)...............)))))..(((((((......((((((((....((((((.........................................))))))..))))))))....(((((((......))))))).))))))).)))..))))..))))))...((((((....)))))).....)))))))).... (-116.81) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1057 310 261 210 161 smit:SMT_2030|5end_chromosomal_replication_initiator_protein_DnaA_1945167..1945397_NEGATIVE 1057 310 261 150 101 smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE 1057 310 261 189 140 smit:SMT_1966|5end_DNA_polymerase_III_alpha_subunit_1897934..1898164_POSITIVE 1057 310 261 150 101 smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE 1057 310 261 190 141 smit:SMT_1926|5end_mevalonate_kinase_1867692..1867922_POSITIVE 1057 310 261 171 122 smit:SMT_1885|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1840057..1840287_NEGATIVE 1057 310 261 218 169 smit:SMT_1672|5end_hypothetical_protein_1660051..1660281_NEGATIVE 1049 300 251 223 174 smit:SMT_1927|5end_cell_division_protein_FtsH_1868779..1869009_NEGATIVE 1049 300 251 226 177 smit:SMT_1873|5end_K02006_cobalt_transport_system_ATP-binding_protein_1831936..1832166_POSITIVE 1029 290 241 231 182 smit:SMT_714|5end_hypothetical_protein_predicted_by_Glimmer/Critica_620979..621209_NEGATIVE 954 290 241 142 94 smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE 906 286 241 124 79 smit:SMT_1977|5end_endopeptidase_O_1907832..1908062_POSITIVE 745 277 238 115 76 smit:SMT_1928|5end_O-methyltransferase_family_protein_1869652..1869882_NEGATIVE 513 263 229 231 193 smit:SMT_1971|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1903282..1903512_POSITIVE 492 262 227 202 170 smit:SMT_303|5end_hypothetical_protein_245364..245594_POSITIVE 405 289 241 194 149 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 405 289 241 179 134 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 405 289 241 152 107 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 405 289 241 194 149 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 405 289 241 170 125 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1057 310 261 70 21 smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE 1029 290 241 81 32 smit:SMT_955|3end_acyltransferase_family_protein_904703..904853_POSITIVE 745 277 238 77 38 smit:SMT_1929|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1869690..1869840_NEGATIVE 492 262 227 77 45 smit:SMT_302|3end_K07444_putative_N6-adenine-specific_DNA_methylase_245319..245469_POSITIVE 368 329 297 69 26 smit:SMT_1415|3end_carboxynorspermidine_decarboxylase_1398443..1398593_NEGATIVE 354 319 273 85 24 smit:SMT_1795|3end_DNA_polymerase_III,_delta_subunit_1769185..1769335_NEGATIVE 334 295 252 51 2 smit:SMT_1733|3end_DNA_repair_protein_RecN_1718636..1718786_POSITIVE 329 300 252 112 54 smit:SMT_1898|3end_aminotransferase_(class_V),_putative_1848877..1849027_NEGATIVE 318 68 21 151 85 smit:SMT_1681|3end_D-alanine-activating_enzyme_1665052..1665202_POSITIVE 310 300 253 149 109 smit:SMT_1798|3end_exonuclease_RexA_1772818..1772968_NEGATIVE 302 288 241 119 64 smit:SMT_308|3end_trans-2-enoyl-ACP_reductase_II_250493..250643_POSITIVE 299 319 274 133 96 smit:SMT_942|3end_hypothetical_protein_893528..893678_NEGATIVE 297 280 235 110 52 smit:SMT_756|3end_3-dehydroquinate_dehydratase_659907..660057_NEGATIVE 293 86 42 68 22 smit:SMT_1914|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1860324..1860474_POSITIVE 286 44 2 75 38 smit:SMT_839|3end_ABC_transporter,_ATP-binding_protein_784194..784344_NEGATIVE 278 329 284 96 44 smit:SMT_1865|3end_D-alanyl_carrier_protein_1827377..1827527_POSITIVE 278 329 284 96 44 smit:SMT_1312|3end_D-alanyl_carrier_protein_1277361..1277511_POSITIVE 278 310 261 138 89 smit:SMT_808|3end_hypothetical_protein_predicted_by_Glimmer/Critica_717897..718047_NEGATIVE 277 317 276 64 15 smit:SMT_2043|3end_putative_mucus_binding_protein_1954013..1954163_NEGATIVE 276 270 221 131 69 smit:SMT_2014|3end_tryptophan_synthase_beta_chain_1932727..1932877_POSITIVE