Origin IGS: atatgaaccaagtttgcggtagatgattgtttcttcgctatctttatcagtagctttaacctctgtacgctctgtagatttagctgctgaagctacatatcctggtttgtttggagttgttacagcgtcgattgttgtatcattgtctttagctgtccatgtaccaaagttagagattgctcctgttactggatctaagtcagctgtacgagtgaatgttaatgtttgtacattgtcagggatacctgcatctgatccgtcagctagtttgtagtgaactgtgtgtgttacttcttcgattaatcctaattctttgtaagtacgtccttttggatcgtttggtactttgtcttcaggtttaggagtaacatttggagtatttggatctactggcttacttggatcgatatttgctggtttggtagtatagattactgtttcagtaatatcctcagcagttgctgttacttctgtcgctggtacagtctctttatctggagtgaagtttgtaacttttggtgaagttacagcttcaatgtttgagctggtgacattctccgatggtaccttacagttactggatgataggtgctgaacgtttgaactctttaggttctgtactgatcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaaccttatgaccataataatgccatcttggaaatccatccaggatccggtggtactgaggctcaggactggggtgatatgttgcttcgtatgtacactcgctatggaaatgctaaaggctttaaagtggaagtattggatttgaagctggttaccgcaaaggtagccaagtt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aacttggctacctttgcggtaaccagcttcaaatccaatacttccactttaaagcctttagcatttccatagcgagtgtacatacgaagcaacatatcaccccagtcctgagcctcagtaccaccggatcctggatggatttccaagatggcattattatggtcataaggttgacaagagcaaggtcatctcgtaactggtcatcatcttatcaagttctgacctttccagcacactggggtcatagctgtttcctgatctaggnnnnnttaattaattaannnnntatcaaagagtagagacgacgtaagaggagtgaacgtacatcaagtatgttacgcagatgttcaaggctgctgatcagtacagaacctaaagagttcaaacgttcagcacctatcatccagtaactgtaaggtaccatcggagaatgtcaccagctcaaacattgaagctgtaacttcaccaaaagttacaaacttcactccagataaagagactgtaccagcgacagaagtaacagcaactgctgaggatattactgaaacagtaatctatactaccaaaccagcaaatatcgatccaagtaagccagtagatccaaatactccaaatgttactcctaaacctgaagacaaagtaccaaacgatccaaaaggacgtacttacaaagaattaggattaatcgaagaagtaacacacacagttcactacaaactagctgacggatcagatgcaggtatccctgacaatgtacaaacattaacattcactcgtacagctgacttagatccagtaacaggagcaatctctaactttggtacatggacagctaaagacaatgatacaacaatcgacgctgtaacaactccaaacaaaccaggatatgtagcttcagcagctaaatctacagagcgtacagaggttaaagctactgataaagatagcgaagaaacaatcatctaccgcaaacttggttcatat Mask Tandem Repeat Region ================================================ atatgaaccaagtttgcggtagatgattgtttcttcgctatctttatcagtagctttaacctctgtacgctctgtagatttagctgctgaagctacatatcctggtttgtttggagttgttacagcgtcgattgttgtatcattgtctttagctgtccatgtaccaaagttagagattgctcctgttactggatctaagtcagctgtacgagtgaatgttaatgtttgtacattgtcagggatacctgcatctgatccgtcagctagtttgtagtgaactgtgtgtgttacttcttcgattaatcctaattctttgtaagtacgtccttttggatcgtttggtactttgtcttcaggtttaggagtaacatttggagtatttggatctactggcttacttggatcgatatttgctggtttggtagtatagattactgtttcagtaatatcctcagcagttgctgttacttctgtcgctggtacagtctctttatctggagtgaagtttgtaacttttggtgaagttacagcttcaatgtttgagctggtgacattctccgatggtaccttacagttactggatgataggtgctgaacgtttgaactctttaggttctgtactgatcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaaccttatgaccataataatgccatcttggaaatccatccaggatccggtggtactgaggctcaggactggggtgatatgttgcttcgtatgtacactcgctatggaaatgctaaaggctttaaagtggaagtattggatttgaagctggttaccgcaaaggtagccaagtt Find is-nt database================================================ Query_seq: SMT_1956:SMT_1957|SMT_1956:SMT_1957:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-->:1889801..1890784 984 atatgaaccaagtttgcggtagatgattgtttcttcgctatctttatcagtagctttaacctctgtacgctctgtagatttagctgctgaagctacatatcctggtttgtttggagttgttacagcgtcgattgttgtatcattgtctttagctgtccatgtaccaaagttagagattgctcctgttactggatctaagtcagctgtacgagtgaatgttaatgtttgtacattgtcagggatacctgcatctgatccgtcagctagtttgtagtgaactgtgtgtgttacttcttcgattaatcctaattctttgtaagtacgtccttttggatcgtttggtactttgtcttcaggtttaggagtaacatttggagtatttggatctactggcttacttggatcgatatttgctggtttggtagtatagattactgtttcagtaatatcctcagcagttgctgttacttctgtcgctggtacagtctctttatctggagtgaagtttgtaacttttggtgaagttacagcttcaatgtttgagctggtgacattctccgatggtaccttacagttactggatgataggtgctgaacgtttgaactctttaggttctgtactgatcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaaccttatgaccataataatgccatcttggaaatccatccaggatccggtggtactgaggctcaggactggggtgatatgttgcttcgtatgtacactcgctatggaaatgctaaaggctttaaagtggaagtattggatttgaagctggttaccgcaaaggtagccaagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1956:SMT_1957|SMT_1956:SMT_1957:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-->:1889801..1890784 984 atatgaaccaagtttgcggtagatgattgtttcttcgctatctttatcagtagctttaacctctgtacgctctgtagatttagctgctgaagctacatatcctggtttgtttggagttgttacagcgtcgattgttgtatcattgtctttagctgtccatgtaccaaagttagagattgctcctgttactggatctaagtcagctgtacgagtgaatgttaatgtttgtacattgtcagggatacctgcatctgatccgtcagctagtttgtagtgaactgtgtgtgttacttcttcgattaatcctaattctttgtaagtacgtccttttggatcgtttggtactttgtcttcaggtttaggagtaacatttggagtatttggatctactggcttacttggatcgatatttgctggtttggtagtatagattactgtttcagtaatatcctcagcagttgctgttacttctgtcgctggtacagtctctttatctggagtgaagtttgtaacttttggtgaagttacagcttcaatgtttgagctggtgacattctccgatggtaccttacagttactggatgataggtgctgaacgtttgaactctttaggttctgtactgatcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaaccttatgaccataataatgccatcttggaaatccatccaggatccggtggtactgaggctcaggactggggtgatatgttgcttcgtatgtacactcgctatggaaatgctaaaggctttaaagtggaagtattggatttgaagctggttaccgcaaaggtagccaagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 818 Max: 979 Len: 162 Subject: gi|89109670|ref|AP_003450.1| peptide chain release factor RF-2 [Escherichia coli W3110] HSP 1 e-value: 5.0E-9 bit: 58.9 Len: 162 Query Start:818 Query End:979 Subject Strand: null Subject Start: 123 Subject End: 184 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y D H N N A I L E I H P G S G G T E A Q D W G D M L L R M Y T R Y G N A K G F K V E V L D - - - - - - - - L K L V T A K V A ..... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y D S A D C Y L D I Q A G S G G T E A Q D W A S M L E R M Y L R W A E S R G F K T E I I E E S E G E V A G I K S V T I K I S ..... Find nr database================================================ Query_seq: SMT_1956:SMT_1957|SMT_1956:SMT_1957:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-->:1889801..1890784 984 atatgaaccaagtttgcggtagatgattgtttcttcgctatctttatcagtagctttaacctctgtacgctctgtagatttagctgctgaagctacatatcctggtttgtttggagttgttacagcgtcgattgttgtatcattgtctttagctgtccatgtaccaaagttagagattgctcctgttactggatctaagtcagctgtacgagtgaatgttaatgtttgtacattgtcagggatacctgcatctgatccgtcagctagtttgtagtgaactgtgtgtgttacttcttcgattaatcctaattctttgtaagtacgtccttttggatcgtttggtactttgtcttcaggtttaggagtaacatttggagtatttggatctactggcttacttggatcgatatttgctggtttggtagtatagattactgtttcagtaatatcctcagcagttgctgttacttctgtcgctggtacagtctctttatctggagtgaagtttgtaacttttggtgaagttacagcttcaatgtttgagctggtgacattctccgatggtaccttacagttactggatgataggtgctgaacgtttgaactctttaggttctgtactgatcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 21 Min: 1 Max: 624 Len: 624 Subject: UniRef90_Q03LS6 Cluster: Possible cell surface protein; n=1; Streptococcus thermophilus LMD-9|Rep: Possible cell surface protein - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 3.0E-16 bit: 88.6 Len: 447 Query Start:1 Query End:447 Subject Strand: null Subject Start: 688 Subject End: 844 I T E T V I Y T T K P A N I D P S K P V D P N T P N V T - - P K P E D K V - P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V - - - - - Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E - - - R T E V K A T D K D S E E T I I Y R K L G S Y ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V D Q S F V V T V K P - H V E P I K P V D P E N P N D P N K P K P G D P I D P N N P D G P K W T E - D L I K Q I D T T R H V N R T I T S V N E K G E E V A Q K V T D K V T F T R E G K I N S V T G E I T - Y G N W T A K D G D T T F D K V E S P V V Q G Y I L K D A K Q K E V A A T T G L T V D S K D E N I E V V Y T K L G S W ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q046R7 Cluster: Adhesion exoprotein; n=1; Lactobacillus gasseri ATCC 33323|Rep: Adhesion exoprotein - Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) HSP 1 e-value: 5.0E-12 bit: 74.7 Len: 372 Query Start:19 Query End:390 Subject Strand: null Subject Start: 1650 Subject End: 1770 .................. V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K - L A D G S D A G I P D - - N V Q T L T F T R T A D L D P V T G A I - - S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................. L N P T D P S T N P D P T N K - - - - - - - N W F R E N G L V K D I T R T I N Y K G L S D D Q F A Q I P E A Q K V Q T V E F T R T A K Y D L I T G K I V A N S E G S W T A V D G K D T F A G F T P F T F A G Y T A A P A R - V E Q V K V T G D D K N S Q I T V A Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q03HU7 Cluster: Adhesion exoprotein; n=1; Pediococcus pentosaceus ATCC 25745|Rep: Adhesion exoprotein - Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) HSP 1 e-value: 1.0E-9 bit: 67.0 Len: 432 Query Start:19 Query End:450 Subject Strand: null Subject Start: 2654 Subject End: 2791 .................. D I T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L - - D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. D F S D T V I Y Y P T D Q D V T P D D P K D P D T P - I N P A D P D S - P V Y P D G V D D D D L N - - Q D V T E T V H Y I N A E T D E E M A A T Y T H T V H Y S R T A H V S Y D Q D G N A T V T Y G D W T A - - - D G S F D A V T S P E I D G Y V A D R P V I D G R T - V T E P G A D F N E T V Y Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 62.8 Len: 534 Query Start:91 Query End:624 Subject Strand: null Subject Start: 2725 Subject End: 2897 .......................................................................................... S V Q N L K S S N V Q H L S S S N C K V P S E N V T S S - N I E A V T S P K V T N F T P D K X X X X X X X X X X X X E D I T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A - - - - D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A ........................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................... T V H Y S R T A H V S Y D Q D G N A T V T Y G D W T A D G S F D A V T S P E I D G Y V A D R P V I D G R T V T E P G A D F N E T V Y Y Y V A D H T V T P D N P I S P D T P L D P S N P Y S P V Y P D - - - - G V D E G D L N K D V T E T I H Y V D E N G N E L A - D T Y T K T V H Y T R D A H V H F N A D G T T - - V V T Y G E W T A - - - D G S F E A V D S P D I D G Y V A ........................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 4.0E-8 bit: 61.6 Len: 369 Query Start:19 Query End:387 Subject Strand: null Subject Start: 965 Subject End: 1088 .................. D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - V A S A A K S T E R T E V - - - - K A T D K D S E E T I I Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. D N A T I H L K H K H K D I N P D D P G - - E Y K D - A T H T T A T Q T V H Y V N Q D G D K V F D D D T S Q T L N Y E R G V T I D E V T G E V I S Y G D W T P V D G D - E F G S V T S P D K P G Y A V D T K V V S G E K P E I T N G K D G K V N D V E V T V T Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 5.0E-7 bit: 58.2 Len: 336 Query Start:19 Query End:354 Subject Strand: null Subject Start: 1367 Subject End: 1480 .................. E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T - E R T E V - - - - K A T D K D S E E T I I Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. K D V D P S D P D D P Y Y D A T H A T S - - T Q H V H Y V D Q D G N T V F D D N D S Q T L D Y E R S V T I D E V T G E I T A Y G D W E A V D - D T E F G T V T S P D K P G Y T P D T P E V T G E K P E I T N G K D G K V N D V E V T V T Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 5.0E-7 bit: 58.2 Len: 309 Query Start:34 Query End:342 Subject Strand: null Subject Start: 1567 Subject End: 1666 ................................. P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ................................. P S D P D D P Y Y D D T H T T S - - T E H I H Y V D Q D G N T V F D D N D S Q T L D Y E R S V T I D E V T G E I T A Y G D W K A V D - D T E F G S V T S P D K P G Y A V D K P E V T G E K P N V T N G K D G K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 6 e-value: 3.0E-6 bit: 55.5 Len: 336 Query Start:19 Query End:354 Subject Strand: null Subject Start: 1171 Subject End: 1284 .................. E D K V P N D P K G R T Y K E L G L I E E V T H T - - - - - V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - - - - - V A S A A K S T E R T E V K A T D K D S E E T I I Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. K D V D P S D P D D P Y Y N D - - - - - - - T H T T A N Q V I H Y V D Q D G N T V F D D N D S Q T L D Y E R S V T I D E V T G E I T A Y G D W K A V D G D - E F G S V T S S D K P G Y A I D K P V V S G E K P T I T N G K D G K V S D V E V T V T Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 7 e-value: 4.0E-6 bit: 55.1 Len: 324 Query Start:19 Query End:342 Subject Strand: null Subject Start: 785 Subject End: 893 .................. P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S - - - - A A K S T E R T E - V K A T D K D S E E T I I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................. P D D P S D P N Y D A T H A T S - - T E T I H Y V N E D G - D Q V F E D G G G K L D F T R T V T I D D V T N E V V E Y G E W T P V T D D - E F A A V T S P D K D G Y T P D T S E V A A Q K P D M T D G P D G T V K D V E V T V T Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q03T21 Cluster: Possible cell surface protein; n=1; Lactobacillus brevis ATCC 367|Rep: Possible cell surface protein - Lactobacillus brevis (strain ATCC 367 / JCM 1170) HSP 1 e-value: 4.0E-9 bit: 65.1 Len: 387 Query Start:16 Query End:402 Subject Strand: null Subject Start: 897 Subject End: 1015 ............... P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T - - I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............... P G E P I D P D N P N G - - - - - - - - P T Y P V G T D F E D L - - T E Q V S R T I Q Y L Y K D G R T A K - P D N V Q A V N F S R N V T V D E V N G A V V - Y T D W L T D D G A V T G C F E A V D S P V I T G Y T A D S T S V A G R D T V S G T D L S P D V Q V Y Y Q ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 57.0 Len: 372 Query Start:19 Query End:390 Subject Strand: null Subject Start: 1097 Subject End: 1221 .................. V D P N T P N V T P K P E D K V P N D P K G R T Y K E - - - - L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T - T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................. V T P D N P G V A G D P I N - - P D N P D G P K Y P N G T A A K D L S K K V S R T I R Y Q F E N G E L A G M - D N V Q T I S F S R N V T I D V V A G T - K V Y T D W L N D S S L T G S Y K A V D S P M I A G Y T A D I L R V A G N T S V L G T D Q D N D I V V T Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q7X0P4 Cluster: Mlp; n=1; Lactobacillus fermentum|Rep: Mlp - Lactobacillus fermentum HSP 1 e-value: 4.0E-9 bit: 65.1 Len: 426 Query Start:13 Query End:438 Subject Strand: null Subject Start: 1771 Subject End: 1896 ............ T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............ T T I T P D K P G N - - P G E P I N P N D P - - - - - - - - E G P K W P E G T D A K - - A L T K Q G T Q T V H Y V Y T D G T K A A - D D N V Q N T T F A H T L V F D N V T G K Q I E D K G W A P E S H - - T F N N V T S P E I D G Y H A D - K K T V D G A T V T V N D P T S E T T V T Y A K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 8.0E-7 bit: 57.4 Len: 387 Query Start:7 Query End:393 Subject Strand: null Subject Start: 1102 Subject End: 1216 ...... P V D P N T P N - - V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G - - - - T W T A K D N D - T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...... P V N P N N P H E G V N P D Q Y E K T V N E - - - - - - - - - - - - - - - - - T V H Y K Y S D G S K A A - D D N I Q T S K W S R T L T L D N V T G K I V P N G E Y D K D W S I E P G Q P T E Y K Q V D S P V I K G Y Y A D Q A N V - - - P A T K V T Q D D I E K T V T Y K P L G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-7 bit: 57.4 Len: 435 Query Start:4 Query End:438 Subject Strand: null Subject Start: 4139 Subject End: 4271 ... T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N - F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G S .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ... T V V L K H G H A P V G P K N P E E P G T P V N P G Y P E G - - P K W P A K D D Y S K - - - - - D Y T S T V H F V D N N G N K M R - D D N V Q T S T W T R T L I I D K V T G Q I L N P D E N W T S - - D K A S Y N E V K V P V I N G Y V A D K A N V P A K - - - E A V Q Q N I E D T V T Y T K V G N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q5FJA7 Cluster: Mucus binding protein Mub; n=1; Lactobacillus acidophilus|Rep: Mucus binding protein Mub - Lactobacillus acidophilus HSP 1 e-value: 1.0E-8 bit: 63.5 Len: 423 Query Start:13 Query End:435 Subject Strand: null Subject Start: 2606 Subject End: 2745 ............ V I Y T T K P A N I D - - - - P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V - Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - V A S A A K S T E R T E V K A - - - - - T D K D S E E T I I Y R K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............ L V H D T V P V T P D N P G T P D K P I N P N - - - - D P R P R S E Q P K Y P T G T S - - E T D L T K D I T R T V H Y - - - S G A D E Y T P N D V K Q P V H F T A K G V L D K V T G E W I T P L T W S - - - E D Q T F N G V N S P K I P G Y H V V S V D K D A D G T N V A S S N V S H T G S D Y T V N V V Y A K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-7 bit: 57.4 Len: 258 Query Start:31 Query End:288 Subject Strand: null Subject Start: 1317 Subject End: 1393 .............................. T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................. T S T V H Y V V S D G K T N P P S D N T Q T I T W T R P G T K D K V T G V T T P T G N W T T P D N Y T D - - - V P T P N L D G Y - - - - - - T P D K T N V P A P T P D P N Q ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 8.0E-7 bit: 57.4 Len: 432 Query Start:13 Query End:444 Subject Strand: null Subject Start: 2381 Subject End: 2526 ............ T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E - V T H T V H Y K L A D G S D A G I P D N V - Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - V A S A A K S T - - - - - - E R T E V K A T D K D S E E T I I Y R K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............ T T T V T I H V K H G T V - P V T P D N P G T P D Q P I N P N D P D P N G P K Y P T G T D K A S I D K T I T R I V H Y - - - E G A D Q Y T P N D V K Q P V H F T A K G V L D K V T G - - - E W I T P L A W S E D Q T F N G V N S P K I P G Y H V E S V D K D T T D N Q N V D S A K I S H T G A D Y T V T V K Y A K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q1UB70 Cluster: Hypothetical protein precursor; n=1; Lactobacillus reuteri 100-23|Rep: Hypothetical protein precursor - Lactobacillus reuteri 100-23 HSP 1 e-value: 2.0E-8 bit: 62.8 Len: 381 Query Start:13 Query End:393 Subject Strand: null Subject Start: 2319 Subject End: 2449 ............ P V D P N T P N V T P K P E D K V P N D P K G R T Y K - - - - E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T - L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - V A S A A K S T - - - - - - E R T E V K A T D K D S E E T I I Y R K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............ P V T P D N P G T P D K P I N - - P N D P D G P K Y P S G T D K A S I D K T I T R T V H Y - - - E G A D Q Y T P N D V Q Q P V H F T A R G E L D K V T G E W T K P L D W S A - - - D Q T F N G V T T P K I P G Y H V V S V D R D T T D N Q N V D S A K I S H T G A D Y T V T V K Y A K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 62.4 Len: 390 Query Start:13 Query End:402 Subject Strand: null Subject Start: 2544 Subject End: 2668 ............ P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T - L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y - V A S A A K S T E R T E V K A - - - - - T D K D S E E T I I Y R K ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............ P D Q P I N P N D P - - - - R P Q N E Q P K Y P N G T S - - E T D L T K D I T R T V H Y A - - - G A G E Y T P N D V Q Q P V H F T A K G V L D K V T G Q W T T P L T W S A - - - D Q T F N G V T T P K I P G Y H V V S V D R D A N G N D V A S T T I A H T G S D Y T V N V V Y A K ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 5.0E-6 bit: 54.7 Len: 258 Query Start:31 Query End:288 Subject Strand: null Subject Start: 1242 Subject End: 1318 .............................. T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................. T S T V H Y V V S D G K T N P P S D N M Q T I T W T R P G T K D K V T G V T T P T G N W T T P D N Y T D - - - V P T P Y L D G Y - - - - - - T P D K T N V P A P T P D P N Q ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q88WI9 Cluster: Cell surface protein; n=1; Lactobacillus plantarum|Rep: Cell surface protein - Lactobacillus plantarum HSP 1 e-value: 2.0E-8 bit: 62.4 Len: 387 Query Start:16 Query End:402 Subject Strand: null Subject Start: 1161 Subject End: 1279 ............... P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T - - I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............... P G E P I D P D N P N G - - - - - - - - P T Y P V G T D F E D L - - T E Q V S Q T I Q Y L Y K D G R T A K - P N N V Q A V N F S R N V T V D E V N G T V V - Y T D W L T D D G T M T G R F E A V D S P S I T G Y T A D P T S V A G R D T V S G T D L S P D V Q V Y Y Q ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.5 Len: 387 Query Start:16 Query End:402 Subject Strand: null Subject Start: 1369 Subject End: 1486 ............... P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............... P G E P I D P D N P N - - - - - - - - G P T Y P A G T A V Q D - - L I K Q V G Q T I H Y Q Y Q D K S T A A - D A N T Q T I T F K R S V T V D E V N N K L T Y T D W L T G T A T T G H Y M P V D S P E I K G Y V A D S T R I A G N D E V R N A D A D T N I V V T Y Q ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 6.0E-7 bit: 57.8 Len: 426 Query Start:19 Query End:444 Subject Strand: null Subject Start: 1556 Subject End: 1692 .................. T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V - - T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................. T Y T V T L K H K L V T V T P E N P G T P G Q P I D P D N P D G - - P K Y P V G T T A Q D L - - T K Q V S Q T I K Y R Y Q N G A S A G T - D N V Q L I T F N R D A T I D E V E P T A V Y T D W L N G T S A T G R Y T - - T V M S P V I T G Y T A D K T Q V A G R D S V A N T D S D T Q V V V T Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 5.0E-6 bit: 54.7 Len: 384 Query Start:19 Query End:402 Subject Strand: null Subject Start: 953 Subject End: 1070 .................. P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T - - I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. P G E P I D P D N P N - - - - - - - - G P T Y P V G T D F E D - - L T E Q V S Q T I Q Y L Y K D G R T A K - P N N V Q A V N F G R N V T V D E V N G T V V - Y T D W L T D D G A V T G R F E A V D S P L I T G Y T A D P T S V A G N P G V V W Q D D D T T I P V T Y ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q040V9 Cluster: Possible cell surface protein; n=1; Lactobacillus gasseri ATCC 33323|Rep: Possible cell surface protein - Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) HSP 1 e-value: 3.0E-8 bit: 62.0 Len: 372 Query Start:19 Query End:390 Subject Strand: null Subject Start: 1495 Subject End: 1634 .................. V D P N T P N V T P K P E D K V - P N D P K G R T Y K - - E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G - - - - - - - - - - - - - - - - - - A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................. V N P E N P G - - - K P D E P I N P N D P E G P K Y P T D S A N L N K D V T H T I H Y V Y A D G T T A K - P S H T Q T L T F T G S G V I D K V T G Q Y V E V D E N G N I K L D A N G K P V P G K L T W V A E D G T T F V E - V I S P T I A G Y T A D K T V V N A I E G I N Q D S N H L E T K V V Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-6 bit: 55.5 Len: 357 Query Start:13 Query End:369 Subject Strand: null Subject Start: 1712 Subject End: 1847 ............ V T P K P E D K V - - - - - - - P N D P K G R T Y K - - E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I - - - - - - - - - - S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............ I T V T P D D K F T E D D P I N P D N P E G P K Y P F D S I A L D K T I T R T I K Y V Y A D G T K A K - D D V V Q T L R F R G T A V I D K V T G E I I I L D E N G R K V S D G I K W A A L D G - T T F V Q V I S P E I A G Y T A D K K E I G S V E N V D S D T E N I T E T V V Y S K ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q5FKA5 Cluster: Putative mucus binding protein; n=1; Lactobacillus acidophilus|Rep: Putative mucus binding protein - Lactobacillus acidophilus HSP 1 e-value: 1.0E-7 bit: 60.1 Len: 378 Query Start:7 Query End:384 Subject Strand: null Subject Start: 1694 Subject End: 1820 ...... P N T P N V T P K P E D K V - P N D P K G R T Y - - - - K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...... P V T P T D P G K P G E P I N P N D P D G P K W P D G T S E D S L K K S G T Q T I H Y V Y S D G S K A K - D D N V Q S F D F T K S A V V D K V T G E I I S Q T G W N V D S H - - T F G N V D T P V I D G Y H A D - K R T A G G T T I T P D D L N K E V T V T Y T P N G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q74HP3 Cluster: Hypothetical protein; n=1; Lactobacillus johnsonii|Rep: Hypothetical protein - Lactobacillus johnsonii HSP 1 e-value: 1.0E-7 bit: 60.1 Len: 372 Query Start:19 Query End:390 Subject Strand: null Subject Start: 1073 Subject End: 1212 .................. V D P N T P N V T P K P E D K V - P N D P K G R T Y K - - E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G - - - - - - - - - - - - - - - - - - A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................. V N P E T P G - - - K P D E P I N P D N P D G P K Y P A D S A N L N K D V T N T I H Y V Y A D G T T A K - P S H T Q T L T F V G S G V I D K V T G Q Y V E V D E N G N V K L D E N G N P I P G K L T W T A S D G T T F V E - V V S P T I V G Y T P D K G V V N A V E G I N Q D S K N L E T T V I Y .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q74LY6 Cluster: Hypothetical protein; n=1; Lactobacillus johnsonii|Rep: Hypothetical protein - Lactobacillus johnsonii HSP 1 e-value: 2.0E-7 bit: 59.3 Len: 408 Query Start:7 Query End:414 Subject Strand: null Subject Start: 1050 Subject End: 1192 ...... A N I D P S K P V D P N T P N V T P K - - - P E D K V P N D P K G R T Y K E L G L I E - - - E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A - - - - - K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...... A K V V P A E T V N E N T P D T T V N V Y Y D H N E I P V G P D T P D K H G V D L N E L T K D V N E T V H Y V Y S D G T K A A - P D V V Q T S K W T R T L T I D A V T N E V I S D G Q Y T T D W A I P K G E K T V Y D Q V D T P V I K G Y - - - H A D K R Q I N A T V V T Q N N I E E T V T Y Q P N G .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q5FKA6 Cluster: Putative mucus binding protein; n=1; Lactobacillus acidophilus|Rep: Putative mucus binding protein - Lactobacillus acidophilus HSP 1 e-value: 3.0E-7 bit: 58.5 Len: 396 Query Start:7 Query End:402 Subject Strand: null Subject Start: 1944 Subject End: 2061 ...... P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...... P G E P I N P N D P N G P K W P S D - - - T D T K G L T - - - - - - - K Q G N Q T I H Y V Y V D G N K A A - D D N V Q N V T F V H T L V F D N V T G Q V I D D R G W T P E S H - - K F N N V F S P T I D G H H A D K I - V V D G V T V T V D N P T S E T T V V Y A K N G ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-7 bit: 58.2 Len: 438 Query Start:7 Query End:444 Subject Strand: null Subject Start: 2315 Subject End: 2451 ...... T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L - - - - G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...... T Y T V I L K H G T T T V I P D K P G K P G E P I N - - - - - - - - P N D P D G P K W P D T T G K D N L S K T G T Q T I H Y T G A G N N T P - - K D N V Q S F T F T R T A V V D N V T G K V I S T G A W N V T S H - - T F G N V D T P V V E G Y H A D - K R T A G N T T I T P E D L N K I V T V N Y T A N G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q1UB69 Cluster: Hypothetical protein precursor; n=1; Lactobacillus reuteri 100-23|Rep: Hypothetical protein precursor - Lactobacillus reuteri 100-23 HSP 1 e-value: 3.0E-7 bit: 58.5 Len: 390 Query Start:4 Query End:393 Subject Strand: null Subject Start: 1548 Subject End: 1671 ... P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I - E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T - W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... P V G P N N P H E P D T P V N - - P N D P N G P K W P A K D T Y T K E Y T S T V H F V D N N G N K M R - D D D V Q T S T W T R T L I I D K V T G Q I I N P D E G W T A - - D K G S Y N E V K V P V I N G Y V A D K A N V P A K E M V Q - - - Q N L E D T V T Y T K V G N ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q88XH5 Cluster: Cell surface protein; n=1; Lactobacillus plantarum|Rep: Cell surface protein - Lactobacillus plantarum HSP 1 e-value: 5.0E-7 bit: 58.2 Len: 516 Query Start:16 Query End:531 Subject Strand: null Subject Start: 782 Subject End: 916 ............... A V T S P K V T N F T P D K X X X X X X X X X X X X E D I T E T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............... A V D S P A I K G Y T P D Q S K I S T Q T V T G D S S D L E F T I V Y T K - - - - - - - - - - - - - N A P T V T T - - E S K T V N E - - - - - - - - - - - - - - - - - T I H Y V Y T D G T I A H D D Y V A Q P I T F T R T V S T D A V T G E - K T Y G G W S A A Q Q F A A V D - - - S P A I K G Y T P D Q S K I S T Q T - V T G D S S D L E F T V V Y K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9RGN5 Cluster: Mucus binding protein precursor; n=1; Lactobacillus reuteri|Rep: Mucus binding protein precursor - Lactobacillus reuteri HSP 1 e-value: 2.0E-6 bit: 56.2 Len: 375 Query Start:4 Query End:378 Subject Strand: null Subject Start: 3070 Subject End: 3188 ... T P N V T P K P E D K V P N D P K G R T Y K - - - - E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G S .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ... T P D N P K T P A D V L P D N P - G K N Y P S G V A K D D L N K T V T R T I N I T T P D G K T Q T I - - - T Q K A E F T R S A T V D E V T G E V T - Y G P W S - - - K N V V L E S V D V P N I S G Y V P S A - - S V P E I T V T P N D Q D M T I N I T Y K K L D S .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1U9P0 Cluster: YD repeat protein precursor; n=1; Lactobacillus reuteri 100-23|Rep: YD repeat protein precursor - Lactobacillus reuteri 100-23 HSP 1 e-value: 3.0E-6 bit: 55.5 Len: 435 Query Start:4 Query End:438 Subject Strand: null Subject Start: 4162 Subject End: 4294 ... T V I Y T T K P A N I D P S K P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N - F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G S .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ... T V V L K H G H A P V G P N N P H E P G T P - V N P D - E P N G P K W P A K D T Y T K - - - - - E Y T S T V H F V D N N G N K M H - D D D V Q T S I W T R T L I V D K V T G Q I I N P D E E W T A - - D K G S Y N E V K V P V I N G Y V A D K A N V P A K E T V Q - - - R N I E D T V T Y S K V G N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1UB71 Cluster: Hypothetical protein; n=1; Lactobacillus reuteri 100-23|Rep: Hypothetical protein - Lactobacillus reuteri 100-23 HSP 1 e-value: 4.0E-6 bit: 55.1 Len: 327 Query Start:31 Query End:357 Subject Strand: null Subject Start: 3906 Subject End: 4009 .............................. P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................. P T G K V P G N P S T T Y E K M E S L T K E I T R T I T V K L P D G Q R Q I I - - - T Q T V K F T R T A T F D A V T G K V T Y S G - W Q V D G N D E W - P A Y T A P E I N G Y T A S Q V S I P A E M V I P S D E N Q S I E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A2RNY4 Cluster: Hypothetical protein; n=2; Lactococcus lactis subsp. cremoris|Rep: Hypothetical protein - Lactococcus lactis subsp. cremoris (strain MG1363) HSP 1 e-value: 5.0E-6 bit: 54.7 Len: 354 Query Start:10 Query End:363 Subject Strand: null Subject Start: 731 Subject End: 851 ......... P K P E D K V P N D P K G R T Y K - E L G L I E E - - - - - V T H T V H Y K L A D G S D A G I P D N V Q - T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......... P E D E T K F A D D P Q H Y V V R L K H G T V V E T E N K S V N E V I H Y V Y D N G D K A A - - D N Y K A T I V F S R T I T T D K V T G E - K T Y S D W T A - D N G G R F A A V L S P I I K D Y I A S Q L K I D E M T G I T V D T A D I E K T V V Y H K V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q047B2 Cluster: Adhesion exoprotein; n=1; Lactobacillus gasseri ATCC 33323|Rep: Adhesion exoprotein - Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) HSP 1 e-value: 5.0E-6 bit: 54.7 Len: 342 Query Start:4 Query End:345 Subject Strand: null Subject Start: 1592 Subject End: 1715 ... V P N D P K G R T Y - - - - - - - K E L G L I E E V - - T H T V H Y K L A D G S D A G - - I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W - - - - - T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y R K L G S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... V N E D N N G K T Y I V S F K H G R K N G T T E T L V P T E T I H F Q Y A D G T K A A D D V H G N A G D F K F T R T P I I D T V T G Q I V D P G T W N K E S Y T F D D G Q K N V K V I N - - - - - G Y V A D K A T Y G N K T - A T P T D L N V E D T V T Y R K I S N ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 9.0E-6 bit: 53.9 Len: 387 Query Start:7 Query End:393 Subject Strand: null Subject Start: 1880 Subject End: 2003 ...... P V D P N T P N V T P K P E D K V P N D P K G R T Y K E L G L I E E V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G - - - - T W T A K D N D T T I D A V T T P N K P G Y V A - - - - - - S A A K S T E R T E V K A T D K D S E E T I I Y R K L G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...... P V G P D T P D K H G V D P D Q V K - - - - - - - - - - - - - - K A Y T S T L H Y Q D S E G K T L S - P D Q Q Q T S T W T R T V T V D T V T N Q I V N G G K Y D T N W T L Q D A N D K Y S N F T V P V V E G Y V A R K T T N N G A T V T T V V A G Q T K V Q Q N L E D T V V Y D K V G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q03P66 Cluster: Possible cell surface protein; n=1; Lactobacillus brevis ATCC 367|Rep: Possible cell surface protein - Lactobacillus brevis (strain ATCC 367 / JCM 1170) HSP 1 e-value: 9.0E-6 bit: 53.9 Len: 273 Query Start:19 Query End:291 Subject Strand: null Subject Start: 894 Subject End: 981 .................. V T H T V H Y K L A D G S D A G I P D N V Q T L T F T R T A D L D P V T G A I S N F G T W T A K D N D T T I D A V T T P N K P G Y V A S A A K S T E R T E V K A T D K D S E E T I I Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................. V T Q T V H Y Q D S T G K P L H A - D T V N T I T F T R T K V A D Q V T G E V T - Y S D W S S S K G G N T F D V V S V P N V S G Y R P D T T K - I Q A V M V T P A S A D D V Q T V T Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 97 End: 195 ................................................................................................ M S W F V W S C Y S V D C C I I V F S C P C T K V R D C S C Y W I ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 23 End: 271 ...................... M I V S S L S L S V A L T S V R S V D L A A E A T Y P G L F G V V T A S I V V S L S L A V H V P K L E I A P V T G S K S ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 216 End: 359 ....................................................................................................................................................................................................................... M L M F V H C Q G Y L H L I R Q L V C S E L C V L L L R L I L I L C K Y V L L D R L V L C L Q V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 334 End: 519 ............................................................................................................................................................................................................................................................................................................................................. M V W Y F V F R F R S N I W S I W I Y W L T W I D I C W F G S I D Y C F S N I L S S C C Y F C R W Y S L F I W S E V C N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 54 Strand: + Start: 431 End: 592 .............................................................................................................................................................................................................................................................................................................................................................................................................................................. M T V S V I S S A V A V T S V A G T V S L S G V K F V T F G E V T A S M F E L V T F S D G T L Q L L D D R C ........................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 48 Strand: + Start: 561 End: 704 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V P Y S Y W M I G A E R L N S L G S V L I S S L E H L R N I L D V R S L L L R R L Y S L I X X ........................................................................................................................................................................................................................................................................................ Protein_Len: 45 Strand: + Start: 819 End: 953 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M T I I M P S W K S I Q D P V V L R L R T G V I C C F V C T L A M E M L K A L K W K Y W I ............................... Protein_Len: 49 Strand: + Start: 836 End: 982 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L E I H P G S G G T E A Q D W G D M L L R M Y T R Y G N A K G F K V E V L D L K L V T A K V A K .. Protein_Len: 60 Strand: - Start: 725 End: 952 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y S S S W N R S S R A R T L R I V M I I G D Q F D M W S G T T S L S L V P T I H Q K T H V S A I S I S F A K F H F Y Q M ................................ Protein_Len: 60 Strand: - Start: 1 End: 537 K P T V N P T N P D V P K S P D I N A P K T T Y I V T E T I D E A T A T V E T A P V T E K D P T F N T V K P S T V A E M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 81 Start: 399 End: 415 ..............................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGATATTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 41 HP_score: -2.1 Tail_Score: -2.82516 Start: 602 End: 616 Full_Region: AGGTGCTGAACGTTT GAACT CTTTA GGTTC TGTACTGATCAGCAG .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCTTTAGGTTC................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_1956:SMT_1957|SMT_1956:SMT_1957:hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica:<-->:1889801..1890784 984 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtt Intra-Species Hit: Count: 1 Min: 625 Max: 817 Len: 193 Subject: smit_SMT_1956_SMT_1957|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1889801,1890784]|984 HSP 1 e-value: 7.0E-87 bit: 323.0 Len: 193 Query Start:625 Query End:817 Subject Strand: POSITIVE Subject Start: 625 Subject End: 817 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacct....................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcagcagccttgaacatctgcgtaacatacttgatgtacgttcactcctcttacgtcgtctctactctttgatannnnnttaattaattaannnnncctagatcaggaaacagctatgaccccagtgtgctggaaaggtcagaacttgataagatgatgaccagttacgagatgaccttgctcttgtcaacct....................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAGCAGCCUUGAACAUCUGCGUAACAUACUUGAUGUACGUUCACUCCUCUUACGUCGUCUCUACUCUUUGAUANNNNNUUAAUUAAUUAANNNNNCCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGGUCAGAACUUGAUAAGAUGAUGACCAGUUACGAGAUGACCUUGCUCUUGUCAACCU .(((.(((...(..(((((.((((((.(((.....)))................(((((((((.................................(((.....)))...(((...(((((((((....))))...)))))....)))...))).))))))..)))))))))))..)..))).)))....... (-39.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGGUUGACAAGAGCAAGGUCAUCUCGUAACUGGUCAUCAUCUUAUCAAGUUCUGACCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGNNNNNUUAAUUAAUUAANNNNNUAUCAAAGAGUAGAGACGACGUAAGAGGAGUGAACGUACAUCAAGUAUGUUACGCAGAUGUUCAAGGCUGCUGA .......((..(((..(..(((((((((((...((((..((((((..((((.(((((...((((....))))))))).))))(((((....(((...............................)))...)))))...))))))...))))..((((.....)))))))))).)))))..)...)))..)). (-42.48) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 707 50 1 97 42 smit:SMT_1561|5end_putative_mucus_binding_protein_1553809..1554039_NEGATIVE 599 130 99 231 200 smit:SMT_959|5end_1-acyl-sn-glycerol-3-phosphate_acyltransferase_905283..905513_POSITIVE 456 155 116 201 157 smit:SMT_1671|5end_hypothetical_protein_1659757..1659987_NEGATIVE 358 137 98 194 153 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 358 137 98 214 173 smit:SMT_389|5end_PTS_system,_galactitol-specific_IIA_component,_putative_321779..322009_POSITIVE 336 188 141 224 177 smit:SMT_755|5end_shikimate_5-dehydrogenase_659917..660147_NEGATIVE 331 50 1 102 51 smit:SMT_1510|5end_ribose_5-phosphate_isomerase_1493488..1493718_NEGATIVE 328 170 122 64 28 smit:SMT_1724|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1709814..1710044_POSITIVE 325 138 112 150 121 smit:SMT_1983|5end_glycerophosphoryl_diester_phosphodiesterase_1913691..1913921_NEGATIVE 308 137 98 80 33 smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE 303 139 97 61 12 smit:SMT_1152|5end_hypothetical_protein_1097197..1097427_NEGATIVE 303 170 121 220 180 smit:SMT_859|5end_K02086_DNA_replication_protein_804058..804288_NEGATIVE 302 59 17 179 135 smit:SMT_544|5end_aminoglycoside_6-adenylyltransferase_460292..460522_POSITIVE 297 60 15 201 155 smit:SMT_1734|5end_serine/threonine_protein_phosphatase_1718558..1718788_POSITIVE 295 139 112 37 6 smit:SMT_956|5end_hypothetical_protein_predicted_by_Glimmer/Critica_904789..905019_NEGATIVE 289 150 103 162 107 smit:SMT_2045|5end_K+_transport_system,_NAD-binding_component_1956139..1956369_POSITIVE 289 141 102 173 130 smit:SMT_1485|5end_exodeoxyribonuclease_1465825..1466055_NEGATIVE 289 141 111 41 4 smit:SMT_1478|5end_manganese_transport_system_membrane_protein_1461256..1461486_NEGATIVE 288 132 98 45 9 smit:SMT_141|5end_K03495_glucose_inhibited_division_protein_A_91408..91638_POSITIVE 282 159 112 215 168 smit:SMT_1872|5end_K03217_preprotein_translocase_YidC_subunit_1831764..1831994_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 852 139 97 116 74 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 836 138 97 126 85 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 836 138 97 115 74 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 829 139 97 127 85 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 812 146 101 123 78 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 807 140 97 139 90 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 803 137 97 57 17 smit:SMT_2030|3end_chromosomal_replication_initiator_protein_DnaA_1944790..1944940_NEGATIVE 803 137 97 125 85 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 803 137 97 114 74 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 803 137 97 130 90 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 803 137 97 114 74 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 803 137 97 125 85 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 803 137 97 53 13 smit:SMT_1895|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1847402..1847552_POSITIVE 803 137 97 125 85 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 803 137 97 114 74 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 803 137 97 130 90 smit:SMT_1852|3end_1,4-alpha-glucan_branching_enzyme_1816467..1816617_NEGATIVE 803 137 97 61 21 smit:SMT_479|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_415604..415754_NEGATIVE 774 138 99 131 92 smit:SMT_713|3end_heat_shock_protein_HtpX_620505..620655_NEGATIVE 730 137 100 38 1 smit:SMT_1857|3end_hypothetical_protein_1821145..1821295_POSITIVE 589 154 113 137 90 smit:SMT_1874|3end_hypothetical_protein_1832623..1832773_NEGATIVE