Origin IGS:
tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacag
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
ctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctnnnnnttaattaattaannnnngagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctaga

Mask Tandem Repeat Region ================================================
tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacag

Find is-nt database================================================
Query_seq: SMT_1926:SMT_1927|SMT_1926:SMT_1927:mevalonate kinase:cell division protein FtsH:-><-:1868123..1868497 375
tctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacag
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 2	Min: 20	Max: 345	Len: 326
Subject: GSAT|SAT 
HSP  1	e-value: 2.0E-7	bit: 56.0	Len: 32	Query Start:310	Query End:341	Subject Strand: POSITIVE	Subject Start: 116	Subject End: 147
.....................................................................................................................................................................................................................................................................................................................gcatgcctgcaggtcgactctagaggatcccc..................................
.....................................................................................................................................................................................................................................................................................................................gcatgactgcaggtcgactctagaggatcccc..................................
HSP  2	e-value: 2.0E-7	bit: 56.0	Len: 32	Query Start:24	Query End:55	Subject Strand: NEGATIVE	Subject Start: 116	Subject End: 147
.......................ggggatcctctagagtcgacctgcaggcatgc................................................................................................................................................................................................................................................................................................................................
.......................ggggatcctctagagtcgacctgcagtcatgc................................................................................................................................................................................................................................................................................................................................

Subject: BBSINE1|SINE 
HSP  1	e-value: 2.0E-6	bit: 52.0	Len: 26	Query Start:20	Query End:45	Subject Strand: POSITIVE	Subject Start: 387	Subject End: 412
...................acagggggatcctctagagtcgacct..........................................................................................................................................................................................................................................................................................................................................
...................acagggggatcctctagagtcgacct..........................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-6	bit: 52.0	Len: 26	Query Start:320	Query End:345	Subject Strand: NEGATIVE	Subject Start: 387	Subject End: 412
...............................................................................................................................................................................................................................................................................................................................aggtcgactctagaggatccccctgt..............................
...............................................................................................................................................................................................................................................................................................................................aggtcgactctagaggatccccctgt..............................


Find is-aa database================================================
Query_seq: SMT_1926:SMT_1927|SMT_1926:SMT_1927:mevalonate kinase:cell division protein FtsH:-><-:1868123..1868497 375
tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: SMT_1926:SMT_1927|SMT_1926:SMT_1927:mevalonate kinase:cell division protein FtsH:-><-:1868123..1868497 375
tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Predict ORF larger than 30AA ================================================
Protein_Len: 43	Strand: +	Start: 6	End: 134
..... M  T  I  L  A  Q  G  D  P  L  E  S  T  C  R  H  A  S  S  A  L  M  N  R  P  T  R  G  E  R  R  F  A  Y  W  A  L  F  R  F  L  A  H .................................................................................................................................................................................................................................................
Protein_Len: 48	Strand: +	Start: 44	End: 187
........................................... M  Q  A  C  K  L  C  I  N  E  S  A  N  A  R  G  E  A  V  C  V  L  G  A  L  P  L  P  R  S  L  T  R  C  A  R  S  F  G  C  G  E  R  Y  Q  L  X  X ............................................................................................................................................................................................
Protein_Len: 41	Strand: +	Start: 73	End: 195
........................................................................ M  G  Q  R  A  G  R  G  G  L  R  I  G  R  S  S  A  S  S  L  T  D  S  L  R  S  V  V  R  L  R  R  A  V  S  A  X  X  L  I  N ....................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 194	End: 373
................................................................................................................................................................................................. M  X  X  X  P  N  D  R  A  Q  R  V  S  E  R  G  S  G  R  A  P  N  T  Q  T  A  S  P  R  A  L  A  D  S  L  M  Q  S  L  H  A  C  R  S  T  L  E  D  P  P  V  L  G  W  S  P  R  S  G  N ..
Protein_Len: 43	Strand: -	Start: 231	End: 359
...................................................................................................................................................................................................................................... H  A  L  F  R  F  L  A  W  Y  A  F  R  R  E  G  R  T  P  R  N  M  L  A  S  S  A  H  R  C  T  S  E  L  P  D  G  Q  A  L  I  T  M ................
Protein_Len: 33	Strand: -	Start: 194	End: 292
................................................................................................................................................................................................. N  X  X  L  R  V  V  S  R  L  S  D  T  L  S  S  A  S  S  R  G  I  R  L  G  G  R  G  A  R  Q  G  M ...................................................................................
Protein_Len: 60	Strand: -	Start: 190	End: 375
............................................................................................................................................................................................. L  X  X  G  F  S  R  A  C  R  T  L  S  R  P  L  P  L  A  G  L  V  C  V  A  E  G  R  A  N  A  S  E  N  I  C  L  K  C  A  Q  L  D  V  R  S  S  G  G  T  S  P  H  D  G  L  D  P  F  M 
Protein_Len: 41	Strand: -	Start: 69	End: 191
.................................................................... H  I  P  W  R  A  P  L  P  P  K  R  I  P  R  E  E  A  E  E  S  V  S  E  S  R  E  T  T  R  S  R  R  A  T  D  A  X  X  X  M ........................................................................................................................................................................................

tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: SMT_1926:SMT_1927|SMT_1926:SMT_1927:mevalonate kinase:cell division protein FtsH:-><-:1868123..1868497 375
tctaggtgaccatcctagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaggatggtcacctagatcaggaaacag
Intra-Species Hit: Count: 37	Min: 56	Max: 375	Len: 320
Subject: smit_SMT_1926_SMT_1927|mevalonate kinase:cell division protein FtsH|POSITIVE:NEGATIVE|[1868123,1868497]|375
HSP  1	e-value: 1.0E-123	bit: 444.0	Len: 254	Query Start:56	Query End:309	Subject Strand: POSITIVE	Subject Start: 56	Subject End: 309
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcnnnnnttaattaattaannnnnagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 56	Subject End: 161
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:56	Query End:161	Subject Strand: NEGATIVE	Subject Start: 204	Subject End: 309
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct......................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct......................................................................................................................................................................................................................
HSP  4	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 347	Subject End: 375
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_2024_SMT_2025|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1940751,1941084]|334
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 56	Subject End: 181
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 56	Subject End: 161
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_1981_SMT_1982|K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:conserved hypothetical protein|POSITIVE:POSITIVE|[1912929,1913175]|247
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 56	Subject End: 181
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 56	Subject End: 161
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 430	Subject End: 555
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 450	Subject End: 555
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 593	Subject End: 621
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1967_SMT_1968|dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein:transcription-repair coupling factor|NEGATIVE:NEGATIVE|[1899774,1900040]|267
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 194
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 69	Subject End: 174
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 3	Subject End: 31
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 283	Subject End: 408
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 303	Subject End: 408
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 446	Subject End: 474
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 543	Subject End: 668
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 543	Subject End: 648
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 477	Subject End: 505
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 104	Subject End: 229
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 104	Subject End: 209
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 38	Subject End: 66
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 128	Subject End: 253
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 128	Subject End: 233
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 62	Subject End: 90
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1887_SMT_1888|LicC protein:K02026 multiple sugar transport system permease protein|POSITIVE:POSITIVE|[1841801,1842227]|427
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 56	Subject End: 181
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 56	Subject End: 161
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 583	Subject End: 708
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 603	Subject End: 708
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 746	Subject End: 774
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1884_SMT_1885|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1839299,1839919]|621
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 430	Subject End: 555
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 450	Subject End: 555
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 593	Subject End: 621
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1873_SMT_1874|K02006 cobalt transport system ATP-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1832412,1832712]|301
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 67	Subject End: 192
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 67	Subject End: 172
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 29
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 143	Subject End: 268
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 143	Subject End: 248
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 77	Subject End: 105
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1851_SMT_1852|ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme|NEGATIVE:NEGATIVE|[1815812,1816556]|745
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 570	Subject End: 695
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 590	Subject End: 695
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 802	Subject End: 927
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 822	Subject End: 927
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 965	Subject End: 993
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1690_SMT_1691|K06148 ATP-binding cassette, subfamily C, bacterial:putative deoxyribonuclease|NEGATIVE:POSITIVE|[1674870, 1675117]|248
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 194
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 69	Subject End: 174
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 3	Subject End: 31
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 1110	Subject End: 1235
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 1130	Subject End: 1235
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 1273	Subject End: 1301
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_779_SMT_780|ribonuclease BN, putative:peptidase family U32|NEGATIVE:NEGATIVE|[688621,688841]|221
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 194
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 69	Subject End: 174
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 3	Subject End: 31
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 132	Subject End: 257
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 152	Subject End: 257
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 295	Subject End: 323
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901
HSP  1	e-value: 3.0E-65	bit: 250.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 734	Subject End: 859
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 754	Subject End: 859
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 121	Subject End: 149
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
HSP  4	e-value: 2.0E-7	bit: 58.0	Len: 33	Query Start:56	Query End:88	Subject Strand: POSITIVE	Subject Start: 187	Subject End: 219
.......................................................aagctctgcattaatgaatcggccaacgcgcgg...............................................................................................................................................................................................................................................................................................
.......................................................aagctctgcatttatgaatcggccaacgcgcgg...............................................................................................................................................................................................................................................................................................
HSP  5	e-value: 2.0E-7	bit: 58.0	Len: 33	Query Start:277	Query End:309	Subject Strand: NEGATIVE	Subject Start: 187	Subject End: 219
....................................................................................................................................................................................................................................................................................ccgcgcgttggccgattcattaatgcagagctt..................................................................
....................................................................................................................................................................................................................................................................................ccgcgcgttggccgattcataaatgcagagctt..................................................................

Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199
HSP  1	e-value: 7.0E-63	bit: 242.0	Len: 122	Query Start:60	Query End:181	Subject Strand: POSITIVE	Subject Start: 227	Subject End: 348
...........................................................tctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
...........................................................tctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 7.0E-60	bit: 232.0	Len: 117	Query Start:56	Query End:172	Subject Strand: POSITIVE	Subject Start: 67	Subject End: 183
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcgg...........................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcgg...........................................................................................................................................................................................................
HSP  3	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 67	Subject End: 172
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  4	e-value: 6.0E-51	bit: 202.0	Len: 102	Query Start:204	Query End:305	Subject Strand: NEGATIVE	Subject Start: 227	Subject End: 328
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcaga......................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcaga......................................................................
HSP  5	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 29
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054
HSP  1	e-value: 1.0E-61	bit: 238.0	Len: 126	Query Start:56	Query End:181	Subject Strand: NEGATIVE	Subject Start: 516	Subject End: 641
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggakaggcgsyttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 1.0E-49	bit: 198.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 536	Subject End: 641
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaarscgcctmtccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 679	Subject End: 707
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436
HSP  1	e-value: 2.0E-60	bit: 234.0	Len: 118	Query Start:56	Query End:173	Subject Strand: POSITIVE	Subject Start: 133	Subject End: 250
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 133	Subject End: 238
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 67	Subject End: 95
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1558_SMT_1559|hypothetical protein:6- phosphofructokinase|NEGATIVE:NEGATIVE|[1544149, 1544703]|555
HSP  1	e-value: 3.0E-59	bit: 230.0	Len: 126	Query Start:56	Query End:181	Subject Strand: POSITIVE	Subject Start: 259	Subject End: 383
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.......................................................aagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
HSP  2	e-value: 2.0E-47	bit: 190.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 259	Subject End: 363
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgc-aaccgcctctccccgcgcgttggccgattcattaatgcrgagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 193	Subject End: 221
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_325_SMT_326|K02029 polar amino acid transport system permease protein:K02029 polar amino acid transport system permease protein|NEGATIVE:NEGATIVE|[263114,263306]|193
HSP  1	e-value: 2.0E-54	bit: 214.0	Len: 108	Query Start:56	Query End:163	Subject Strand: NEGATIVE	Subject Start: 36	Subject End: 143
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc....................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc....................................................................................................................................................................................................................
HSP  2	e-value: 3.0E-53	bit: 210.0	Len: 106	Query Start:204	Query End:309	Subject Strand: POSITIVE	Subject Start: 38	Subject End: 143
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_1971_SMT_1972|hypothetical protein predicted by Glimmer/Critica:uncharacterized conserved phage related protein|POSITIVE:POSITIVE|[1903587,1903801]|215
HSP  1	e-value: 1.0E-52	bit: 208.0	Len: 109	Query Start:56	Query End:164	Subject Strand: POSITIVE	Subject Start: 51	Subject End: 159
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg...................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaagcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg...................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-51	bit: 202.0	Len: 106	Query Start:204	Query End:309	Subject Strand: NEGATIVE	Subject Start: 51	Subject End: 156
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcttctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_2005_SMT_2006|pullulanase, type I:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1926380,1926611]|232
HSP  1	e-value: 2.0E-41	bit: 170.0	Len: 86	Query Start:82	Query End:167	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 86
.................................................................................cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg................................................................................................................................................................................................................
.................................................................................cgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcg................................................................................................................................................................................................................
HSP  2	e-value: 8.0E-38	bit: 159.0	Len: 80	Query Start:204	Query End:283	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 80
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcg............................................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcg............................................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 123	Subject End: 151
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1942_SMT_1943|zinc metalloprotease ZmpB, truncated:alpha/beta hydrolase fold|POSITIVE:NEGATIVE|[1878445,1878659]|215
HSP  1	e-value: 5.0E-39	bit: 163.0	Len: 82	Query Start:56	Query End:137	Subject Strand: POSITIVE	Subject Start: 56	Subject End: 137
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactga..............................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactga..............................................................................................................................................................................................................................................
HSP  2	e-value: 5.0E-39	bit: 163.0	Len: 82	Query Start:228	Query End:309	Subject Strand: NEGATIVE	Subject Start: 56	Subject End: 137
...................................................................................................................................................................................................................................tcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...................................................................................................................................................................................................................................tcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................

Subject: smit_SMT_2029_SMT_2030|acetyltransferase, GNAT family:chromosomal replication initiator protein DnaA|POSITIVE:NEGATIVE|[1944345,1944879]|535
HSP  1	e-value: 2.0E-35	bit: 151.0	Len: 76	Query Start:234	Query End:309	Subject Strand: POSITIVE	Subject Start: 337	Subject End: 412
.........................................................................................................................................................................................................................................agcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
.........................................................................................................................................................................................................................................agcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  2	e-value: 2.0E-35	bit: 151.0	Len: 76	Query Start:56	Query End:131	Subject Strand: NEGATIVE	Subject Start: 337	Subject End: 412
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgct....................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgct....................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 450	Subject End: 478
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1985_SMT_1986|hypothetical protein predicted by Glimmer/Critica:mercuric reductase|NEGATIVE:POSITIVE|[1914662,1914982]|321
HSP  1	e-value: 2.0E-32	bit: 141.0	Len: 71	Query Start:56	Query End:126	Subject Strand: POSITIVE	Subject Start: 212	Subject End: 282
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcc.........................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcc.........................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-32	bit: 141.0	Len: 71	Query Start:239	Query End:309	Subject Strand: NEGATIVE	Subject Start: 212	Subject End: 282
..............................................................................................................................................................................................................................................ggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
..............................................................................................................................................................................................................................................ggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 146	Subject End: 174
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_2001_SMT_2002|membrane protease protein family:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1923950,1924234]|285
HSP  1	e-value: 2.0E-29	bit: 131.0	Len: 70	Query Start:240	Query End:309	Subject Strand: POSITIVE	Subject Start: 150	Subject End: 219
...............................................................................................................................................................................................................................................gaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
...............................................................................................................................................................................................................................................gaagcggaagagcgcccaatacgcaacccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  2	e-value: 2.0E-29	bit: 131.0	Len: 70	Query Start:56	Query End:125	Subject Strand: NEGATIVE	Subject Start: 150	Subject End: 219
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttc..........................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcgggttgcgtattgggcgctcttccgcttc..........................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 257	Subject End: 285
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_2000_SMT_2001|hypothetical protein:membrane protease protein family|NEGATIVE:POSITIVE|[1923199,1923526]|328
HSP  1	e-value: 1.0E-27	bit: 125.0	Len: 63	Query Start:247	Query End:309	Subject Strand: POSITIVE	Subject Start: 143	Subject End: 205
......................................................................................................................................................................................................................................................aagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
......................................................................................................................................................................................................................................................aagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  2	e-value: 1.0E-27	bit: 125.0	Len: 63	Query Start:56	Query End:118	Subject Strand: NEGATIVE	Subject Start: 143	Subject End: 205
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctctt.................................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctctt.................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 243	Subject End: 271
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_387_SMT_388|hypothetical protein predicted by Glimmer/Critica:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[321179,321311]|133
HSP  1	e-value: 7.0E-26	bit: 119.0	Len: 60	Query Start:250	Query End:309	Subject Strand: POSITIVE	Subject Start: 6	Subject End: 65
.........................................................................................................................................................................................................................................................agcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
.........................................................................................................................................................................................................................................................agcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  2	e-value: 7.0E-26	bit: 119.0	Len: 60	Query Start:56	Query End:115	Subject Strand: NEGATIVE	Subject Start: 6	Subject End: 65
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgct....................................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgct....................................................................................................................................................................................................................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: POSITIVE	Subject Start: 103	Subject End: 131
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_1955_SMT_1956|carbamoyl-phosphate synthase small chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1889499,1889626]|128
HSP  1	e-value: 2.0E-20	bit: 101.0	Len: 55	Query Start:56	Query End:110	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 123
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgg.........................................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaagcggtttgcgtattgg.........................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-20	bit: 101.0	Len: 55	Query Start:255	Query End:309	Subject Strand: NEGATIVE	Subject Start: 69	Subject End: 123
..............................................................................................................................................................................................................................................................ccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
..............................................................................................................................................................................................................................................................ccaatacgcaaaccgcttctccccgcgcgttggccgattcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 3	Subject End: 31
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_2044_SMT_2045|transcriptional activator TipA, putative:K+ transport system, NAD-binding component|NEGATIVE:POSITIVE|[1955976,1956278]|303
HSP  1	e-value: 6.0E-14	bit: 79.8	Len: 56	Query Start:56	Query End:111	Subject Strand: POSITIVE	Subject Start: 148	Subject End: 203
.......................................................aagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattggg........................................................................................................................................................................................................................................................................
.......................................................aagctctgcattaatgaaatcgcccacgcgcggggagaggcggtttgcgtattggg........................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-14	bit: 79.8	Len: 56	Query Start:254	Query End:309	Subject Strand: NEGATIVE	Subject Start: 148	Subject End: 203
.............................................................................................................................................................................................................................................................cccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagctt..................................................................
.............................................................................................................................................................................................................................................................cccaatacgcaaaccgcctctccccgcgcgtgggcgatttcattaatgcagagctt..................................................................
HSP  3	e-value: 2.0E-7	bit: 58.0	Len: 29	Query Start:347	Query End:375	Subject Strand: NEGATIVE	Subject Start: 82	Subject End: 110
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag
..........................................................................................................................................................................................................................................................................................................................................................ctaggatggtcacctagatcaggaaacag

Subject: smit_SMT_463_SMT_464|para-aminobenzoate synthetase component I / 4-amino-4-deoxychorismate lyase:ribonuclease Z|POSITIVE:POSITIVE|[402900,403006]|107
HSP  1	e-value: 1.0E-8	bit: 61.9	Len: 39	Query Start:260	Query End:298	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 107
...................................................................................................................................................................................................................................................................acgcaaaccgcctctccccgcgcgttggccgattcatta.............................................................................
...................................................................................................................................................................................................................................................................acgcaacccgcttctccccgcgcgttggccgattcatta.............................................................................
HSP  2	e-value: 1.0E-8	bit: 61.9	Len: 39	Query Start:67	Query End:105	Subject Strand: NEGATIVE	Subject Start: 69	Subject End: 107
..................................................................taatgaatcggccaacgcgcggggagaggcggtttgcgt..............................................................................................................................................................................................................................................................................
..................................................................taatgaatcggccaacgcgcggggagaagcgggttgcgt..............................................................................................................................................................................................................................................................................


Inter-species Hit: Count: 5	Min: 110	Max: 255	Len: 146
Subject: NC_008121_YPA_PCP0009_YPA_PCP0003|replication regulatory protein:pesticin|POSITIVE:NEGATIVE|[4293,5987]|1695
HSP  1	e-value: 2.0E-26	bit: 121.0	Len: 61	Query Start:113	Query End:173	Subject Strand: POSITIVE	Subject Start: 240	Subject End: 300
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
HSP  2	e-value: 3.0E-19	bit: 97.6	Len: 49	Query Start:204	Query End:252	Subject Strand: NEGATIVE	Subject Start: 240	Subject End: 288
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................

Subject: NC_008119_YPN_PCP0009_YPN_PCP0003|replication regulatory protein:pesticin|POSITIVE:NEGATIVE|[4281,5975]|1695
HSP  1	e-value: 2.0E-26	bit: 121.0	Len: 61	Query Start:113	Query End:173	Subject Strand: POSITIVE	Subject Start: 240	Subject End: 300
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
HSP  2	e-value: 3.0E-19	bit: 97.6	Len: 49	Query Start:204	Query End:252	Subject Strand: NEGATIVE	Subject Start: 240	Subject End: 288
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................

Subject: NC_005816_YP_pPCP03_YP_pPCP04|putative replication regulatory protein:hypothetical protein|POSITIVE:POSITIVE|[3120,3485]|366
HSP  1	e-value: 2.0E-26	bit: 121.0	Len: 61	Query Start:113	Query End:173	Subject Strand: POSITIVE	Subject Start: 240	Subject End: 300
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
HSP  2	e-value: 3.0E-19	bit: 97.6	Len: 49	Query Start:204	Query End:252	Subject Strand: NEGATIVE	Subject Start: 240	Subject End: 288
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................

Subject: NC_003132_YPPCP1.03_YPPCP1.04|putative replication regulatory protein:pesticin immunity protein|POSITIVE:POSITIVE|[3120,4354]|1235
HSP  1	e-value: 2.0E-26	bit: 121.0	Len: 61	Query Start:113	Query End:173	Subject Strand: POSITIVE	Subject Start: 240	Subject End: 300
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt..........................................................................................................................................................................................................
HSP  2	e-value: 3.0E-19	bit: 97.6	Len: 49	Query Start:204	Query End:252	Subject Strand: NEGATIVE	Subject Start: 240	Subject End: 288
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................
...........................................................................................................................................................................................................agccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagc...........................................................................................................................

Subject: NC_002127_pOSAK1_03_pOSAK1_01|hypothetical protein:plasmid mobilization|NEGATIVE:POSITIVE|2389, 412 {([2389,3306]), ([1,412])} (circular)|1330
HSP  1	e-value: 7.0E-26	bit: 119.0	Len: 72	Query Start:110	Query End:181	Subject Strand: NEGATIVE	Subject Start: 736	Subject End: 807
.............................................................................................................ggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc..................................................................................................................................................................................................
.............................................................................................................ggcgctcttccgcttcctcgctcactgactcgctacgctcggtcgttcgactgcggcgagcggtgtcagctc..................................................................................................................................................................................................
HSP  2	e-value: 7.0E-17	bit: 89.7	Len: 49	Query Start:207	Query End:255	Subject Strand: POSITIVE	Subject Start: 759	Subject End: 807
..............................................................................................................................................................................................................cgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcc........................................................................................................................
..............................................................................................................................................................................................................cgaacgaccgagcgtagcgagtcagtgagcgaggaagcggaagagcgcc........................................................................................................................


Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGAGCGGUAUCAGCUCNNNNNUUAAUUAAUUAANNNNNAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCC
((((((((((((((((((((((((((((((((((((((((((((((((((((.....((((.......))))......................)))))))))))))))))))))))))))))))))))))))))))))))))))) (-123.33)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUNNNNNUUAAUUAAUUAANNNNNGAGCUGAUACCGCUCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCC
((((((((((((((((((((((((((((((((((((((((((((((((((((......(((....)))......((((.......)))).....)))))))))))))))))))))))))))))))))))))))))))))))))))) (-123.40)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1196	50	1	169	120	smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE
1069	140	95	223	178	smit:SMT_1982|5end_conserved_hypothetical_protein_1913036..1913266_POSITIVE
1069	140	95	196	151	smit:SMT_1972|5end_uncharacterized_conserved_phage_related_protein_1903662..1903892_POSITIVE
1069	140	95	211	166	smit:SMT_1691|5end_putative_deoxyribonuclease_1674978..1675208_POSITIVE
1069	140	95	174	129	smit:SMT_325|5end_K02029_polar_amino_acid_transport_system_permease_protein_263023..263253_NEGATIVE
1044	44	1	231	188	smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE
948	135	95	231	191	smit:SMT_1156|5end_K07485_transposase_1099938..1100168_POSITIVE
441	48	1	135	76	smit:SMT_338|5end_heat-inducible_transcription_repressor_HrcA_276825..277055_POSITIVE
428	57	12	135	88	smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE
410	70	22	82	25	smit:SMT_370|5end_acetyltransferase,_GNAT_family_304688..304918_POSITIVE
393	60	12	224	172	smit:SMT_1543|5end_diphosphomevalonate_decarboxylase_1528024..1528254_NEGATIVE
381	70	22	225	168	smit:SMT_976|5end_hypothetical_protein_925183..925413_NEGATIVE
374	137	99	162	119	smit:SMT_125|5end_hypothetical_protein_77664..77894_NEGATIVE
369	57	12	193	144	smit:SMT_1970|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1902023..1902253_POSITIVE
366	69	24	183	126	smit:SMT_331|5end_endo-beta-N-acetylglucosaminidase_266416..266646_POSITIVE
365	55	12	47	1	smit:SMT_1719|5end_DNA_mismatch_repair_protein_1706842..1707072_NEGATIVE
363	60	11	205	143	smit:SMT_1823|5end_GTP-binding_protein_1794982..1795212_POSITIVE
359	18	1	231	214	smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE
359	18	1	231	214	smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE
359	70	21	176	120	smit:SMT_1454|5end_cytidine_deaminase_1437886..1438116_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1223	60	11	51	2	smit:SMT_780|3end_peptidase_family_U32_688752..688902_NEGATIVE
423	57	12	84	25	smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE
373	48	1	132	77	smit:SMT_977|3end_conserved_hypothetical_protein,_Rrf2_family_protein_925252..925402_NEGATIVE
372	60	12	52	1	smit:SMT_1946|3end_sucrose-6-phosphate_hydrolase_1881205..1881355_POSITIVE
368	135	95	83	40	smit:SMT_481|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_417641..417791_NEGATIVE
360	64	26	63	20	smit:SMT_2057|3end_cell_division_protein_FtsH_1966897..1967047_NEGATIVE
353	70	23	69	11	smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE
350	48	1	64	1	smit:SMT_1750|3end_anthranilate_phosphoribosyltransferase_1729095..1729245_POSITIVE
347	71	31	72	21	smit:SMT_1938|3end_zinc_metalloprotease_ZmpB,_putative_1876230..1876380_POSITIVE
347	60	11	147	104	smit:SMT_1202|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1163945..1164095_NEGATIVE
345	69	26	94	44	smit:SMT_914|3end_sucrose-6-phosphate_hydrolase_867673..867823_POSITIVE
344	55	12	150	110	smit:SMT_1778|3end_ATP-dependent_RNA_helicase_1753611..1753761_NEGATIVE
333	71	35	145	100	smit:SMT_988|3end_N-acetylneuraminate_lyase_932242..932392_NEGATIVE
329	67	24	100	51	smit:SMT_2111|3end_hypothetical_protein_predicted_by_Glimmer/Critica_2000036..2000186_POSITIVE
329	70	23	82	20	smit:SMT_197|3end_DNA-directed_RNA_polymerase,_alpha_subunit_128467..128617_POSITIVE
327	50	2	51	6	smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE
324	49	1	77	20	smit:SMT_955|3end_acyltransferase_family_protein_904703..904853_POSITIVE
323	72	56	17	1	smit:SMT_1968|3end_transcription-repair_coupling_factor_1899951..1900101_NEGATIVE
323	70	21	136	94	smit:SMT_558|3end_K09014_Fe-S_cluster_assembly_protein_SufB_476747..476897_POSITIVE
323	60	12	83	24	smit:SMT_173|3end_50S_ribosomal_protein_L2_117407..117557_POSITIVE