Origin IGS: tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagctggattgaaaaggccaacagagatagtaaatttttcccaattttttactatttttactggatttacatcaccctctatgctctttttagccttgcttggacagttttttcagtcttgtttttcaatatcctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agctttccagcacactggactggccgtcgttttacaagtctagtccgacctaaactcaggggtaccgagcnnnnnttaattaattaannnnnccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaaggatattgaaaaacaagactgaaaaaactgtccaagcaaggctaaaaagagcatagagggtgatgtaaatccagtaaaaatagtaaaaaattgggaaaaatttactatctctgttggccttttcaatccagctgaaaaagtaaaaactgacgcagaagctgaattagctaaagctactaaagaagctgaaaaagctaaagctaaagttgaagagcttaaaaaagaagaaaaagacaacttagaagctcttaaagctgctttagatcaacttgaaaaagaaattgatgctgatgctaaaattacaaataaagacgaagctaaagctgcaatcggtaaagatgctttattaaaagctatcgaagatggtgttatcactgctacacaagctgctaaagaattagaagatcaaaactttccagcacactggactggccgtcgttttacaaggtctagtccgacctagannnnnttaattaattaannnnnccgtccatctttgcagactcaagatctctttctggaatgcaataaagaaattcctaaataagtaaatattaaatacactcgccaattcctggaataataactgcaagacga Mask Tandem Repeat Region ================================================ tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagctggattgaaaaggccaacagagatagtaaatttttcccaattttttactatttttactggatttacatcaccctctatgctctttttagccttgcttggacagttttttcagtcttgtttttcaatatcctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Find is-nt database================================================ Query_seq: SMT_1913:SMT_1914|SMT_1913:SMT_1914:RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:->->:1858826..1859625 800 tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagctggattgaaaaggccaacagagatagtaaatttttcccaattttttactatttttactggatttacatcaccctctatgctctttttagccttgcttggacagttttttcagtcttgtttttcaatatcctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1913:SMT_1914|SMT_1913:SMT_1914:RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:->->:1858826..1859625 800 tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagctggattgaaaaggccaacagagatagtaaatttttcccaattttttactatttttactggatttacatcaccctctatgctctttttagccttgcttggacagttttttcagtcttgtttttcaatatcctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1913:SMT_1914|SMT_1913:SMT_1914:RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:->->:1858826..1859625 800 tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagctggattgaaaaggccaacagagatagtaaatttttcccaattttttactatttttactggatttacatcaccctctatgctctttttagccttgcttggacagttttttcagtcttgtttttcaatatcctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 468 Max: 611 Len: 144 Subject: UniRef90_Q97PD1 Cluster: Hypothetical protein; n=2; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae HSP 1 e-value: 2.0E-6 bit: 55.8 Len: 144 Query Start:468 Query End:611 Subject Strand: null Subject Start: 20 Subject End: 67 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W I E K A N R D S K X X X X X X X X X X X X X T L Y A L F S L A W T V F S V L F F N I L S S T L ............................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W I D K D N R E S K F F P I F Y Y F Y W I Y I T L Y A L F S L A W T V F S V L F F N I V L R N L ............................................................................................................................................................................................. tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 6 End: 125 ..... M Q L L F Q E L A S V F N I Y L F R N F F I A F Q K E I L S L Q R W T X X L I N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 223 End: 330 .............................................................................................................................................................................................................................. M I T P S S I A F N K A S L P I A A L A S S L F V I L A S A S I S F S S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 471 End: 617 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M E K A N R D S K F F P I F Y Y F Y W I Y I T L Y A L F S L A W T V F S V L F F N I L S S T L G S ....................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 361 End: 633 ........................................................................................................................................................................................................................................................................................................................................................................ M S F S S F L S S S T L A L A F S A S L V A L A N S A S A S V F T F S A G L K R P T E I V N F S Q F F T I F T G F T S P ....................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 621 End: 722 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F P D L G D H P S T G G S S R V D L Q A C K L C I N E S X X L I N .............................................................................. Protein_Len: 58 Strand: - Start: 545 End: 718 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ A R K L R A Q V T K E T K N K L I R E L V S P D Y S N G S R P S W G L V P P D E L T S R C A H L S Q M L S D X X X M .................................................................................. Protein_Len: 60 Strand: - Start: 138 End: 545 ......................................................................................................................................... K E E K K L E E V K A K A K E A E K T A K A L E A E A D T K V K E A P N F L G V S I T F K E W N K V I K V P N V D G E M ............................................................................................................................................................................................................................................................... tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 49 HP_score: -2.2 Tail_Score: -3.66874 Start: 340 End: 356 Full_Region: gaaaaagacaactta gaagct cttaa agctgc tttagatcaacttga ...................................................................................................................................................................................................................................................................................................................................................gaagctcttaaagctgc............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_1913:SMT_1914|SMT_1913:SMT_1914:RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:->->:1858826..1859625 800 tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaatttctttttcaagttgatctaaagcagctttaagagcttctaagttgtctttttcttcttttttaagctcttcaactttagctttagctttttcagcttctttagtagctttagctaattcagcttctgcgtcagtttttactttttcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct Intra-Species Hit: Count: 19 Min: 1 Max: 800 Len: 800 Subject: smit_SMT_1913_SMT_1914|RBL02035:K03696 ATP-dependent Clp protease ATP-binding subunit ClpC|POSITIVE:POSITIVE|[1858826,1859625]|800 HSP 1 e-value: 1.0E-157 bit: 555.0 Len: 316 Query Start:1 Query End:316 Subject Strand: POSITIVE Subject Start: 1 Subject End: 316 tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacnnnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tcgtcttgcagttattattccaggaattggcgagtgtatttaatatttacttatttaggaatttctttattgcattccagaaagagatcttgagtctgcaaagatggacggnnnnnttaattaattaannnnntctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagttttgatcttctaattctttagcagcttgtgtagcagtgataacaccatcttcgatagcttttaataaagcatctttaccgattgcagctttagcttcgtctttatttgtaattttagcatcagcatcaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-44 bit: 180.0 Len: 127 Query Start:674 Query End:800 Subject Strand: POSITIVE Subject Start: 674 Subject End: 800 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcnnnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggnnnnnttaattaattaannnnngctcggtacccctgagtttaggtcggactagacttgtaaaacgacggccagtccagtgtgctggaaagct HSP 3 e-value: 2.0E-15 bit: 85.7 Len: 50 Query Start:749 Query End:798 Subject Strand: POSITIVE Subject Start: 136 Subject End: 186 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 4 e-value: 2.0E-15 bit: 85.7 Len: 51 Query Start:136 Query End:186 Subject Strand: POSITIVE Subject Start: 749 Subject End: 798 .......................................................................................................................................taggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................taggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1872_SMT_1873|K03217 preprotein translocase YidC subunit:K02006 cobalt transport system ATP-binding protein|NEGATIVE:POSITIVE|[1831855,1832075]|221 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 69 Query Start:731 Query End:799 Subject Strand: POSITIVE Subject Start: 78 Subject End: 147 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaagc. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagc. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 94 Subject End: 146 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2030_SMT_2031|chromosomal replication initiator protein DnaA:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1945258,1945722]|465 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 118 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 102 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2023_SMT_2024|tryptophan synthase, alpha subunit:hypothetical protein|POSITIVE:POSITIVE|[1940058,1940498]|441 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 171 Subject End: 239 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 187 Subject End: 239 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1970_SMT_1971|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1903093,1903421]|329 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 144 Subject End: 212 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 6.0E-22 bit: 107.0 Len: 54 Query Start:134 Query End:187 Subject Strand: POSITIVE Subject Start: 160 Subject End: 213 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 1009 Subject End: 1077 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 1025 Subject End: 1077 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 33 Query Start:674 Query End:706 Subject Strand: POSITIVE Subject Start: 54 Subject End: 86 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. Subject: smit_SMT_1965_SMT_1966|hypothetical protein:DNA polymerase III alpha subunit|POSITIVE:POSITIVE|[1897772,1898073]|302 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 206 Subject End: 274 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 222 Subject End: 274 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1958_SMT_1959|tryptophan synthase, beta subunit:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1892113,1892724]|612 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: NEGATIVE Subject Start: 397 Subject End: 465 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 6.0E-22 bit: 107.0 Len: 54 Query Start:134 Query End:187 Subject Strand: NEGATIVE Subject Start: 396 Subject End: 449 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1954_SMT_1955|6-phospho-beta-glucosidase:carbamoyl- phosphate synthase small chain|POSITIVE:NEGATIVE|[1888892,1889081]|190 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 122 Subject End: 190 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 138 Subject End: 190 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 291 Subject End: 359 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 307 Subject End: 359 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 33 Query Start:674 Query End:706 Subject Strand: POSITIVE Subject Start: 530 Subject End: 562 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. Subject: smit_SMT_1925_SMT_1926|K03697 ATP-dependent Clp protease ATP-binding subunit ClpE:mevalonate kinase|POSITIVE:POSITIVE|[1867519,1867831]|313 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 216 Subject End: 284 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 232 Subject End: 284 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 79 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 63 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 33 Query Start:674 Query End:706 Subject Strand: NEGATIVE Subject Start: 689 Subject End: 721 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatc.............................................................................................. Subject: smit_SMT_1673_SMT_1674|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1660103,1660450]|348 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 165 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 6.0E-22 bit: 107.0 Len: 54 Query Start:134 Query End:187 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 149 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaagt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1630_SMT_1631|hypothetical protein:phosphopantothenoylcysteine synthase/decarboxylase|POSITIVE:NEGATIVE|[1618202, 1618293]|92 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: POSITIVE Subject Start: 22 Subject End: 90 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: POSITIVE Subject Start: 38 Subject End: 90 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_714_SMT_715|hypothetical protein predicted by Glimmer/Critica:DHH subfamily 1 protein|NEGATIVE:POSITIVE|[621070,621518]|449 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 68 Query Start:731 Query End:798 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 159 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaag.. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag.. HSP 2 e-value: 2.0E-21 bit: 105.0 Len: 53 Query Start:134 Query End:186 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 143 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1927_SMT_1928|cell division protein FtsH:O-methyltransferase family protein|NEGATIVE:NEGATIVE|[1868870,1869247]|378 HSP 1 e-value: 4.0E-23 bit: 111.0 Len: 67 Query Start:731 Query End:797 Subject Strand: NEGATIVE Subject Start: 74 Subject End: 141 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaa... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaa... HSP 2 e-value: 9.0E-21 bit: 103.0 Len: 52 Query Start:134 Query End:185 Subject Strand: NEGATIVE Subject Start: 74 Subject End: 125 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaa....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2045_SMT_2046|K+ transport system, NAD-binding component:choline binding protein C|POSITIVE:NEGATIVE|[1956819,1957369]|551 HSP 1 e-value: 6.0E-22 bit: 107.0 Len: 69 Query Start:731 Query End:799 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 95 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactagac-ttgtaaaacgacggccagtccagtgtgctggaaagc. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctkgraagc. HSP 2 e-value: 6.0E-19 bit: 97.6 Len: 53 Query Start:134 Query End:186 Subject Strand: NEGATIVE Subject Start: 27 Subject End: 79 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctggaaag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagtgtgctkgraag...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2002_SMT_2003|hypothetical protein predicted by Glimmer/Critica:serine protease|NEGATIVE:NEGATIVE|[1924496,1924782]|287 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 57 Query Start:731 Query End:787 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 58 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactaga-cttgtaaaacgacggccagtccagt............. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagt............. HSP 2 e-value: 9.0E-15 bit: 83.8 Len: 42 Query Start:134 Query End:175 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 42 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: smit_SMT_1941_SMT_1942|hypothetical protein:zinc metalloprotease ZmpB, truncated|POSITIVE:POSITIVE|[1877724,1878021]|298 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 57 Query Start:731 Query End:787 Subject Strand: POSITIVE Subject Start: 241 Subject End: 298 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtttaggtcggactaga-cttgtaaaacgacggccagtccagt............. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctcggtacccctgagtctaggtcggactagaccttgtaaaacgacggccagtccagt............. HSP 2 e-value: 9.0E-15 bit: 83.8 Len: 42 Query Start:134 Query End:175 Subject Strand: POSITIVE Subject Start: 257 Subject End: 298 .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................................................tctaggtcggactagaccttgtaaaacgacggccagtccagt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGUCUUGCAGUUAUUAUUCCAGGAAUUGGCGAGUGUAUUUAAUAUUUACUUAUUUAGGAAUUUCUUUAUUGCAUUCCAGAAAGAGAUCUUGAGUCUGCAAAGAUGGACGGNNNNNUUAAUUAAUUAANNNNNUCUAGGUCGGACUAGACCUUGUAAAACGACGGCCAGUCCAGUGUGCUGGAAAGUUUUGAUCUUCUAAUUCUUUAGCAGCUUGUGUAGCAGUGAUAACACCAUCUUCGAUAGCUUUUAAUAAAGCAUCUUUACCGAUUGCAGCUUUAGCUUCGUCUUUAUUUGUAAUUUUAGCAUCAGCAUCAAUUUCUUUUUCAAGUUGAUCUAAAGCAGCUUUAAGAGCUUCUAAGUUGUCUUUUUCUUCUUUUUUAAGCUCUUCAACUUUAGCUUUAGCUUUUUCAGCUUCUUUAGUAGCUUUAGCUAAUUCAGCUUCUGCGUCAGUUUUUACUUUUUCAGCUGGAUUGAAAAGGCCAACAGAGAUAGUAAAUUUUUCCCAAUUUUUUACUAUUUUUACUGGAUUUACAUCACCCUCUAUGCUCUUUUUAGCCUUGCUUGGACAGUUUUUUCAGUCUUGUUUUUCAAUAUCCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUAAUGAAUCGGNNNNNUUAAUUAAUUAANNNNNGCUCGGUACCCCUGAGUUUAGGUCGGACUAGACUUGUAAAACGACGGCCAGUCCAGUGUGCUGGAAAGCU ......((((((....(((((..((((.((..(((((.....)))))..)).)))).)))))......)))))).....((((((((..((((...((((((...(((((.......(((..(((((.........(((((......)))))..((((((.....(((((.......)))))...))))))......)))))..)))..((((...((.((((((((......)))...(((.(((((....)))))))).......))))).))...)))).)))))...))))))......((....)).))))..)))))))).((((((.((((((.((((..(((((((...((((((..........(((....)))...........)))))).)))))))..)))).))))))..((...((((.....))))...))................)))))).((((((((((((....((((((((((((.............))))))))))))..................((((.((.............)).))))..))))))))))))...............((((((((((((((((((((.......(..((((..(((((.......)))))..))))..)....(((((..(((((((((((((......)).))))...................................((((((.....))))))..))))))).))))).............))))...)))))))))))))))).. (-209.94) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCUUUCCAGCACACUGGACUGGCCGUCGUUUUACAAGUCUAGUCCGACCUAAACUCAGGGGUACCGAGCNNNNNUUAAUUAAUUAANNNNNCCGAUUCAUUAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGGAUAUUGAAAAACAAGACUGAAAAAACUGUCCAAGCAAGGCUAAAAAGAGCAUAGAGGGUGAUGUAAAUCCAGUAAAAAUAGUAAAAAAUUGGGAAAAAUUUACUAUCUCUGUUGGCCUUUUCAAUCCAGCUGAAAAAGUAAAAACUGACGCAGAAGCUGAAUUAGCUAAAGCUACUAAAGAAGCUGAAAAAGCUAAAGCUAAAGUUGAAGAGCUUAAAAAAGAAGAAAAAGACAACUUAGAAGCUCUUAAAGCUGCUUUAGAUCAACUUGAAAAAGAAAUUGAUGCUGAUGCUAAAAUUACAAAUAAAGACGAAGCUAAAGCUGCAAUCGGUAAAGAUGCUUUAUUAAAAGCUAUCGAAGAUGGUGUUAUCACUGCUACACAAGCUGCUAAAGAAUUAGAAGAUCAAAACUUUCCAGCACACUGGACUGGCCGUCGUUUUACAAGGUCUAGUCCGACCUAGANNNNNUUAAUUAAUUAANNNNNCCGUCCAUCUUUGCAGACUCAAGAUCUCUUUCUGGAAUGCAAUAAAGAAAUUCCUAAAUAAGUAAAUAUUAAAUACACUCGCCAAUUCCUGGAAUAAUAACUGCAAGACGA .(((.(((((....)))))..)))..(((((((.((.(((......)))......((((((((..((((.......((((((((((..................(((((.((......)))))))(((((...(((((......((.((((..(.((((((((.........(....)..........((((((((((((((((...(((((((.....(((..........)))......(((((((..((((.((((.((((.......))))...............(((((......))))).)))))))).)))))))))))))).(((((.....((((.....((((((....(((((.(((((...(((..((((((.((((.....(((....))).......((((((((....(((..(.......)..)))..))))))))..)))).)))))).(((((((....)))...)))).)))...)))))................(.(((....))).)..)))))...((((((((....))))).))).......))))))....)))).....)))))......................))))))))))))))))..)))))))).)..)))).)))))))..)))))..........)))))))))).............((((((((...((.(((......))).)).))))...)))).............................))))...)))))))).........)).))))))) (-201.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1115 690 641 227 178 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 1115 690 641 200 151 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 1115 690 641 69 20 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1115 690 641 218 169 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 1115 690 641 163 114 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 1115 690 641 163 114 smit:SMT_1961|5end_K07485_transposase_1894206..1894436_POSITIVE 1115 690 641 163 114 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 1115 690 641 207 158 smit:SMT_1954|5end_6-phospho-beta-glucosidase_1888548..1888778_POSITIVE 1115 690 641 198 149 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 1115 690 641 163 114 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 1115 690 641 212 163 smit:SMT_1155|5end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099665..1099895_NEGATIVE 1115 690 641 163 114 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 1115 690 641 84 35 smit:SMT_464|5end_ribonuclease_Z_402867..403097_POSITIVE 1115 690 641 163 114 smit:SMT_388|5end_branched-chain_amino_acid_transport_system_II_carrier_protein_321172..321402_POSITIVE 1082 690 642 137 89 smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE 1074 680 631 229 180 smit:SMT_1686|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1670175..1670405_POSITIVE 1045 660 611 212 163 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 1045 660 611 212 163 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 988 800 751 196 146 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 987 780 731 219 169 smit:SMT_1872|5end_K03217_preprotein_translocase_YidC_subunit_1831764..1831994_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 988 800 751 144 94 smit:SMT_542|3end_hypothetical_protein_458400..458550_POSITIVE 987 780 731 114 64 smit:SMT_2044|3end_transcriptional_activator_TipA,_putative_1955274..1955424_NEGATIVE 987 780 731 114 64 smit:SMT_2026|3end_K03466_DNA_segregation_ATPase_FtsK/SpoIIIE,_S-DNA-T_family_1941905..1942055_NEGATIVE 987 780 731 114 64 smit:SMT_2016|3end_tyrosine_recombinase_1933021..1933171_NEGATIVE 987 780 731 114 64 smit:SMT_2006|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1926803..1926953_POSITIVE 987 780 731 124 74 smit:SMT_2001|3end_membrane_protease_protein_family_1923889..1924039_POSITIVE 987 780 731 124 74 smit:SMT_1985|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1914407..1914557_NEGATIVE 987 780 731 114 64 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 987 780 731 72 22 smit:SMT_1955|3end_carbamoyl-phosphate_synthase_small_chain_1888992..1889142_NEGATIVE 987 780 731 114 64 smit:SMT_1886|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1841198..1841348_POSITIVE 987 780 731 114 64 smit:SMT_1658|3end_hypothetical_protein_1648937..1649087_POSITIVE 987 780 731 70 20 smit:SMT_1631|3end_phosphopantothenoylcysteine_synthase/decarboxylase_1618204..1618354_NEGATIVE 987 780 731 114 64 smit:SMT_1558|3end_hypothetical_protein_1543855..1544005_NEGATIVE 987 780 731 124 74 smit:SMT_1464|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1445361..1445511_POSITIVE 987 780 731 114 64 smit:SMT_1155|3end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099183..1099333_NEGATIVE 979 708 661 52 5 smit:SMT_1956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1889537..1889687_NEGATIVE 962 180 134 58 12 smit:SMT_2045|3end_K+_transport_system,_NAD-binding_component_1956758..1956908_POSITIVE 946 708 662 47 1 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE 935 186 141 47 2 smit:SMT_957|3end_UDP-glucose_4-epimerase_904776..904926_NEGATIVE 935 186 141 132 87 smit:SMT_956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_904691..904841_NEGATIVE