Origin IGS: acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnnccatgawttggtcaataagaatattactgtkgtgacaaatttgattcaccatgccgcacagttggtgaaaagcagattccatctgtcatggttggaggaagtgtcaagatgtcaacagatgctagcatacgggggcgttgnnnnnttaattaattaannnnnggaagctgcagaagaaaagcagctgcaatcgaaaaagttaatgccgataaggcgaaagctttaacagcaattaatgataactcggtaacgacaaaagcagcattagataatgccaaaacatctgggacaacagcgattagcaatgataatcctgtagtaacgaagaaaaatacggcaaaagcagctattgactcagctttaagagcgaaagaagcagccatcgatgcgaatgacgacttaacgacagaagagaagaatgcagcaaaagcagatgcacaggcaaaagcgaatgcagcaaaaacagcaatcgataatgcaacaacaaacgtagcagtggactcagcccaaacggcaggaacaacaagtgtaagttcagta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tactgaacttacacttgttgttcctgccgtttgggctgagtccactgctacgtttgttgttgcattatcgattgctgtttttgctgcattcgcttttgcctgtgcatctgcttttgctgcattcttctcttctgtcgttaagtcgtcattcgcatcgatggctgcttctttcgctcttaaagctgagtcaatagctgcttttgccgtatttttcttcgttactacaggattatcattgctaatcgctgttgtcccagatgttttggcattatctaatgctgcttttgtcgttaccgagttatcattaattgctgttaaagctttcgccttatcggcattaactttttcgattgcagctgcttttcttctgcagcttccnnnnnttaattaattaannnnncaacgcccccgtatgctagcatctgttgacatcttgacacttcctccaaccatgacagatggaatctgcttttcaccaactgtgcggcatggtgaatcaaatttgtcacmacagtaatattcttattgaccaawtcatggnnnnnttaattaattaannnnncatattccatcccaactgccatggcaagatgacatagtggtgagtgataatagtcttgccatcttctgtcaatgaagcgtkgatgtatggtgt Mask Tandem Repeat Region ================================================ acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnnccatgawttggtcaataagaatattactgtkgtgacaaatttgattcaccatgccgcacagttggtgaaaagcagattccatctgtcatggttggaggaagtgtcaagatgtcaacagatgctagcatacgggggcgttgnnnnnttaattaattaannnnnggaagctgcagaagaaaagcagctgcaatcgaaaaagttaatgccgataaggcgaaagctttaacagcaattaatgataactcggtaacgacaaaagcagcattagataatgccaaaacatctgggacaacagcgattagcaatgataatcctgtagtaacgaagaaaaatacggcaaaagcagctattgactcagctttaagagcgaaagaagcagccatcgatgcgaatgacgacttaacgacagaagagaagaatgcagcaaaagcagatgcacaggcaaaagcgaatgcagcaaaaacagcaatcgataatgcaacaacaaacgtagcagtggactcagcccaaacggcaggaacaacaagtgtaagttcagta Find is-nt database================================================ Query_seq: SMT_1891:SMT_1892|SMT_1891:SMT_1892:putative dihydrolipoamide S-acetyltransferase:hypothetical protein:->->:1845080..1845734 655 acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnnccatgawttggtcaataagaatattactgtkgtgacaaatttgattcaccatgccgcacagttggtgaaaagcagattccatctgtcatggttggaggaagtgtcaagatgtcaacagatgctagcatacgggggcgttgnnnnnttaattaattaannnnnggaagctgcagaagaaaagcagctgcaatcgaaaaagttaatgccgataaggcgaaagctttaacagcaattaatgataactcggtaacgacaaaagcagcattagataatgccaaaacatctgggacaacagcgattagcaatgataatcctgtagtaacgaagaaaaatacggcaaaagcagctattgactcagctttaagagcgaaagaagcagccatcgatgcgaatgacgacttaacgacagaagagaagaatgcagcaaaagcagatgcacaggcaaaagcgaatgcagcaaaaacagcaatcgataatgcaacaacaaacgtagcagtggactcagcccaaacggcaggaacaacaagtgtaagttcagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1891:SMT_1892|SMT_1891:SMT_1892:putative dihydrolipoamide S-acetyltransferase:hypothetical protein:->->:1845080..1845734 655 acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnnccatgawttggtcaataagaatattactgtkgtgacaaatttgattcaccatgccgcacagttggtgaaaagcagattccatctgtcatggttggaggaagtgtcaagatgtcaacagatgctagcatacgggggcgttgnnnnnttaattaattaannnnnggaagctgcagaagaaaagcagctgcaatcgaaaaagttaatgccgataaggcgaaagctttaacagcaattaatgataactcggtaacgacaaaagcagcattagataatgccaaaacatctgggacaacagcgattagcaatgataatcctgtagtaacgaagaaaaatacggcaaaagcagctattgactcagctttaagagcgaaagaagcagccatcgatgcgaatgacgacttaacgacagaagagaagaatgcagcaaaagcagatgcacaggcaaaagcgaatgcagcaaaaacagcaatcgataatgcaacaacaaacgtagcagtggactcagcccaaacggcaggaacaacaagtgtaagttcagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1891:SMT_1892|SMT_1891:SMT_1892:putative dihydrolipoamide S-acetyltransferase:hypothetical protein:->->:1845080..1845734 655 acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnnccatgawttggtcaataagaatattactgtkgtgacaaatttgattcaccatgccgcacagttggtgaaaagcagattccatctgtcatggttggaggaagtgtcaagatgtcaacagatgctagcatacgggggcgttgnnnnnttaattaattaannnnnggaagctgcagaagaaaagcagctgcaatcgaaaaagttaatgccgataaggcgaaagctttaacagcaattaatgataactcggtaacgacaaaagcagcattagataatgccaaaacatctgggacaacagcgattagcaatgataatcctgtagtaacgaagaaaaatacggcaaaagcagctattgactcagctttaagagcgaaagaagcagccatcgatgcgaatgacgacttaacgacagaagagaagaatgcagcaaaagcagatgcacaggcaaaagcgaatgcagcaaaaacagcaatcgataatgcaacaacaaacgtagcagtggactcagcccaaacggcaggaacaacaagtgtaagttcagta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 4 Min: 117 Max: 655 Len: 539 Subject: UniRef90_Q4L7A1 Cluster: Similar to FmtB/extracellular matrix binding protein; n=1; Staphylococcus haemolyticus JCSC1435|Rep: Similar to FmtB/extracellular matrix binding protein - Staphylococcus haemolyticus (strain JCSC1435) HSP 1 e-value: 4.0E-9 bit: 63.9 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1498 Subject End: 1616 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K D A A K T K V D E E A T K A K A A I D Q A S - - T N N G V D Q A K T S G E T T I S S I Q P E V V K K A E A K Q A I D D A V T A K K A E I D Q N Q E A T K E E K D A A K A K V D E E A T K A K N N I D Q S T T N N D V D Q A K T D G A S A I T K I HSP 2 e-value: 5.0E-9 bit: 63.5 Len: 498 Query Start:158 Query End:655 Subject Strand: null Subject Start: 1376 Subject End: 1539 ............................................................................................................................................................. D S P C R T V G E K Q I P S V M V G G S V K M S T D A S I R G R X X X N * L X X G S C R R K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V ............................................................................................................................................................. D N E I T A I N K I Q P E A I K K A E S K Q A I D D A A T A K K A A I D Q V S D A T Q E E K D A A K A K V D E E V T K A K S A I D - - K A N T N N D V D Q A K T N G T T I I S S I E P E A I K K A E A K Q A I D V A V S A K K Q E I D N N E N A I Q E E K D A A K T K V D E E A T K A K A A I D Q A S T N N G V D Q A K T S G E T T I S S I HSP 3 e-value: 7.0E-9 bit: 63.2 Len: 237 Query Start:293 Query End:529 Subject Strand: null Subject Start: 1037 Subject End: 1113 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E .............................................................................................................................. .................................................................................................................................................................................................................................................................................................... K Q A A K D K V D A E A T K A K A A I D Q - - A T T N N D V E Q A K S S G V T T I E G I Q P D T I K K S S A K Q A I D D S A N A K K A A I D N N S D A T Q E E .............................................................................................................................. HSP 4 e-value: 9.0E-9 bit: 62.8 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1575 Subject End: 1693 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K D A A K A K V D E E A T K A K N N I D Q S - - T T N N D V D Q A K T D G A S A I T K I Q P D V V K K S E A K R A I D D E V I A K K A E I D Q N Q E A T K E E K D A A K A K V D E E A T K A K Q S I D N A T T N E A V D Q A K T Q G V T T I T A I HSP 5 e-value: 6.0E-7 bit: 56.6 Len: 435 Query Start:221 Query End:655 Subject Strand: null Subject Start: 936 Subject End: 1078 ............................................................................................................................................................................................................................ K M S T D A S I R G R X X X N * L X X G S C R R K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V ............................................................................................................................................................................................................................ K A I D D A A T A K K E A I N N T S D A T Q E E K D A A I A K V D A A V T A A K Q A I T Q - - A T T N D N V D Q E Q N S G T S T I T G I Q P E V T K K A A A R K A I D D E V V A K K A A I D T V A D A T D E E K Q A A K D K V D A E A T K A K A A I D Q A T T N N D V E Q A K S S G V T T I E G I HSP 6 e-value: 1.0E-6 bit: 55.8 Len: 237 Query Start:293 Query End:529 Subject Strand: null Subject Start: 1267 Subject End: 1343 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E .............................................................................................................................. .................................................................................................................................................................................................................................................................................................... K D A A K A K V D E E V A K A K R A I D - - S S T T N D A V D Q A K D S G V T T I N N I Q P E S I E K I K A K Q A I D D T V T A K K N A I D Q D G T T T Q E E .............................................................................................................................. HSP 7 e-value: 2.0E-6 bit: 54.7 Len: 237 Query Start:293 Query End:529 Subject Strand: null Subject Start: 1652 Subject End: 1728 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E .............................................................................................................................. .................................................................................................................................................................................................................................................................................................... K D A A K A K V D E E A T K A K Q S I D N - - A T T N E A V D Q A K T Q G V T T I T A I Q P D T I K K A E A K R A I D E V A K A K K Q E I D N N T N A T K E E .............................................................................................................................. Subject: UniRef90_Q4L7A0 Cluster: Similar to FmtB protein; n=1; Staphylococcus haemolyticus JCSC1435|Rep: Similar to FmtB protein - Staphylococcus haemolyticus (strain JCSC1435) HSP 1 e-value: 9.0E-9 bit: 62.8 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1569 Subject End: 1683 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A K V D E A V N N A K V S I D Q A I N N N G V - - - - - - D T A K T N G V D S I N N V Q P T V V K K D E A K T A I D K A A E A K K A E I D Q T P N A T D E E K A A A K A K V D E A V T T A K N A I D Q A T N N A G V D T A K T N G V D S I N N V HSP 2 e-value: 1.0E-8 bit: 62.4 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1642 Subject End: 1760 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N A G V D T A K T N G V D S I N N V Q P T V V K K D E A K T A I E N A A R A K K A E I D Q T P N A T D E E K A V A K A K V D E A V T T A K N A I D Q A T N N N G V D T A K T N G V D A I N N V HSP 3 e-value: 2.0E-8 bit: 61.6 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1411 Subject End: 1529 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K I A A K A K V D E A V T T A K N A I D Q - - A T N N A G V D T A K T N G V D A I N N V Q P T V V K K D E A K T A I E N A A R A K K A E I D Q T P N A T D E E K A T A K A K V D E A V T T A K N A I D Q A T N N N G V D T A K T N G V D A I N N V HSP 4 e-value: 2.0E-8 bit: 61.6 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1873 Subject End: 1991 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N A G V D T A K T N G V D S I N N V Q P T V V K K D E A K T A I E N A A R A K K A E I D Q T P N A T D E E K V A A K A K V D E A V N N A K A S I D Q V T N N E G V D T A K S N G L D S I N N I HSP 5 e-value: 3.0E-8 bit: 61.2 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1257 Subject End: 1375 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N A G V D T A K T N G V D T I N N I Q P V V V K K D E A K T A I D K A A E A K K A E I D Q T P N A T D E E K A T A K A K V D E A V T T A K N A I D Q A T N N D G V D T A K S E G S D A I N H V HSP 6 e-value: 3.0E-8 bit: 61.2 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 2027 Subject End: 2145 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N A G V D T A K T N G V D S I N N V Q P T V V K K D E A K T A I E N A A R A K K A E I D Q T P N A T D E E K V A A K A K V D E A V N N A K A S I D Q A T N N D G V D T A K S N G L D S I N N I HSP 7 e-value: 6.0E-8 bit: 60.1 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1103 Subject End: 1221 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N N G V D T T K T N G V D A I N N V Q P T V V K K D E A K T A I D K A A E A K K A E I D Q T P D A T D E E K A A A K A K V D E A V N N A K A S I D Q V T N N E G V D T A K S N G L D S I N N I HSP 8 e-value: 6.0E-8 bit: 60.1 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1488 Subject End: 1606 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A T A K A K V D E A V T T A K N A I D Q - - A T N N N G V D T A K T N G V D A I N N V Q P T V V K K D E A K T A I E N A A R A K K A E I D Q M P N A T D E E K A A A K A K V D E A V N N A K V S I D Q A I N N N G V D T A K T N G V D S I N N V HSP 9 e-value: 8.0E-8 bit: 59.7 Len: 468 Query Start:188 Query End:655 Subject Strand: null Subject Start: 837 Subject End: 990 ........................................................................................................................................................................................... Q I P S V M V G G S V K M S T D A S I R G R X X X N * L X X G S C R R K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V ........................................................................................................................................................................................... Q V D A I K K N Q A K Q I I T D Q A N S K K A E I D Q T P N A T D E E K A A A K A K V D E A V T T A K N A I D Q - - A T N N D G V D T A K T N G V D T I N N V Q P T V V K K D E A K T A I D K A A E A K K A E I D Q T P D A T D E E K A A A K A K V D E A V N N A K A S I D Q A T N N N G V D T A K S E G S D A I N H V HSP 10 e-value: 1.0E-7 bit: 58.9 Len: 354 Query Start:302 Query End:655 Subject Strand: null Subject Start: 1720 Subject End: 1837 ............................................................................................................................................................................................................................................................................................................. A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V ............................................................................................................................................................................................................................................................................................................. A V A K A K V D E A V T T A K N A I D Q A T N N N G V D T A K T N G V D A I N N V Q P T V V K K D E A K T A I D K A A E A K K A E I D Q T P N A T D E E K A A A K A K V D E A V N N A K A S I D Q A T N N N G V D T A K S E G T D A I N H V HSP 11 e-value: 1.0E-7 bit: 58.9 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 2181 Subject End: 2299 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A A A K A K V D E A V T T A K N A I D Q - - A T N N D G V D T A K S N G L D S I N N I Q P T V V K K D E A K A A I D K A A E A K K A E I D Q I L N A T D E E K A A A K A K V D E A V T T A K N A I D Q T T N N V G V D A A K E S G V E S I N Q V HSP 12 e-value: 2.0E-7 bit: 58.2 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 1334 Subject End: 1452 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A T A K A K V D E A V T T A K N A I D Q - - A T N N D G V D T A K S E G S D A I N H V Q P V V V K K D E A K T A I D K A A E A K K A E I D Q T P N A T D E E K I A A K A K V D E A V T T A K N A I D Q A T N N A G V D T A K T N G V D A I N N V HSP 13 e-value: 4.0E-7 bit: 57.4 Len: 363 Query Start:293 Query End:655 Subject Strand: null Subject Start: 953 Subject End: 1067 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E X X X X X X X X X X X X X X X X X X X X X X X X X V A V D S A Q T A G T T S V S S V .................................................................................................................................................................................................................................................................................................... K A K V D E A V N N A K A S I D Q A T N N N G V - - - - - - D T A K S E G S D A I N H V Q P V V V K K D E A K T A I D K A A E A K K A E I N Q T P N A T D E E K V A A K A K V D E A V T T A K N A I D Q A T N N A G V D T A K S N G L D S I N N I Subject: UniRef90_Q97RE7 Cluster: Lactose phosphotransferase system repressor; n=3; Streptococcus pneumoniae|Rep: Lactose phosphotransferase system repressor - Streptococcus pneumoniae HSP 1 e-value: 1.0E-8 bit: 43.1 Len: 75 Query Start:117 Query End:191 Subject Strand: null Subject Start: 109 Subject End: 133 .................................................................................................................... H X L V N K N I T V V T N L I H H A A Q L V K S R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................... H E L V N K N V T V V T N S I H H A A Q L V E K Q ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-8 bit: 38.9 Len: 69 Query Start:182 Query End:250 Subject Strand: null Subject Start: 131 Subject End: 153 ..................................................................................................................................................................................... E K Q I P S V M V G G S V K M S T D A S I R G ..................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................... E K Q I P T V M V G G N V K T A T D A S I G G ..................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_O85472 Cluster: Extracellular matrix binding protein; n=1; Abiotrophia defectiva|Rep: Extracellular matrix binding protein - Abiotrophia defectiva HSP 1 e-value: 1.0E-7 bit: 58.9 Len: 237 Query Start:293 Query End:529 Subject Strand: null Subject Start: 894 Subject End: 970 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T - - - A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E .............................................................................................................................. .................................................................................................................................................................................................................................................................................................... K A Q A I Q Q V D Q A L A N A K T Q V Q A A N D N N - - - - - G V N Q A K T A G T T A I N N I N P Q G T Q K A Q A I A A I E A A E Q A K R L E L Q G R N D L T T E E .............................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 55.1 Len: 237 Query Start:293 Query End:529 Subject Strand: null Subject Start: 1206 Subject End: 1282 .................................................................................................................................................................................................................................................................................................... K A A A I E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A K E A A I D A N D D L T T E E .............................................................................................................................. .................................................................................................................................................................................................................................................................................................... K E A A I R K V D E E A A K A R Q A I N D - - A T S N A D V A A K Q A Q G T Q A I N N V P Q T P A A K N A A K A A V E Q A A D A K K Q A I E N D P N L T R Q E .............................................................................................................................. acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnncnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 10 End: 99 ......... M X A S L T E D G K T I I T H H Y V I L P W Q L G W N M X X ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 6 End: 107 ..... M H X R F I D R R W Q D Y Y H S P L C H L A M A V G M E Y X X L I N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 123 End: 269 .......................................................................................................................... M V N K N I T V V T N L I H H A A Q L V K S R F H L S W L E E V S R C Q Q M L A Y G G V X X L I N .................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 305 End: 655 ................................................................................................................................................................................................................................................................................................................ M E K V N A D K A K A L T A I N D N S V T T K A A L D N A K T S G T T A I S N D N P V V T K K N T A K A A I D S A L R A Protein_Len: 60 Strand: - Start: 465 End: 653 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K L L S L L L W R H S H R S L S L L S S H L L L L H V P L L S H L L F L L R Y H L L L R L L P S L G F P L F L L H L N M .. Protein_Len: 60 Strand: - Start: 268 End: 585 ........................................................................................................................................................................................................................................................................... V A I L L S L G T T V F F F V A F A A I S E A K L A F S A A M S A F S S K V V S S F F A A F A S A C A F A F A A F V A M ...................................................................... Protein_Len: 34 Strand: - Start: 142 End: 243 ............................................................................................................................................. Q X S L N S E G H R V T P S F C I G D T M T P P L T L I D V S A L M ............................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 102 End: 197 ..................................................................................................... N I L X X M X Q D I L I N S X H C I Q N V M G C L Q H F A S E M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnncnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 20 End: 49 ...................ATTGACAGAAGATGGCAAGACTATTATCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnncnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1891:SMT_1892|SMT_1891:SMT_1892:putative dihydrolipoamide S-acetyltransferase:hypothetical protein:->->:1845080..1845734 655 acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaannnnncnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 110 Len: 110 Subject: smit_SMT_1891_SMT_1892|putative dihydrolipoamide S-acetyltransferase:hypothetical protein|POSITIVE:POSITIVE|[1845080,1845734]|655 HSP 1 e-value: 1.0E-45 bit: 186.0 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 1 Subject End: 110 acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. acaccatacatcmacgcttcattgacagaagatggcaagactattatcactcaccactatgtcatcttgccatggcagttgggatggaatatgnnnnnttaattaattaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACACCAUACAUCMACGCUUCAUUGACAGAAGAUGGCAAGACUAUUAUCACUCACCACUAUGUCAUCUUGCCAUGGCAGUUGGGAUGGAAUAUGNNNNNUUAAUUAAUUAA ...((((...((.((.((((.......))))(((((((((..((................))..)))))))))....)).)).))))....................... (-17.69) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAUUAAUUAANNNNNCAUAUUCCAUCCCAACUGCCAUGGCAAGAUGACAUAGUGGUGAGUGAUAAUAGUCUUGCCAUCUUCUGUCAAUGAAGCGUKGAUGUAUGGUGU .................(((....((((.....(((....)))...(((((.(((((..((..........))..))).))..)))))..........))))....))). (-20.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 339 80 31 119 77 smit:SMT_320|5end_alcohol_dehydrogenase,_zinc-containing_259492..259722_NEGATIVE 313 70 23 137 91 smit:SMT_148|5end_glycoprotein_endopeptidase_98033..98263_POSITIVE 301 77 34 222 180 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 301 78 33 231 189 smit:SMT_990|5end_hypothetical_protein_933947..934177_NEGATIVE 283 92 51 146 98 smit:SMT_1420|5end_K02004_1406582..1406812_NEGATIVE 275 79 32 73 14 smit:SMT_1329|5end_GTP-binding_protein_CgtA_1305788..1306018_NEGATIVE 272 79 33 228 180 smit:SMT_849|5end_hypothetical_protein_796127..796357_NEGATIVE 270 80 36 230 176 smit:SMT_1403|5end_dihydrolipoamide_dehydrogenase_1379204..1379434_POSITIVE 265 78 33 220 172 smit:SMT_1078|5end_folylpolyglutamate_synthase_1016713..1016943_NEGATIVE 263 48 5 133 89 smit:SMT_1843|5end_transposase,_TnpA_1808100..1808330_POSITIVE 263 48 5 133 89 smit:SMT_1238|5end_transposase,_TnpA_1198738..1198968_POSITIVE 261 86 44 191 147 smit:SMT_1053|5end_ABC_transporter_permease_protein_993671..993901_NEGATIVE 257 84 50 223 181 smit:SMT_1543|5end_diphosphomevalonate_decarboxylase_1528024..1528254_NEGATIVE 256 88 50 49 5 smit:SMT_895|5end_cysteinyl-tRNA_synthetase_843037..843267_NEGATIVE 256 88 50 49 5 smit:SMT_383|5end_cysteinyl-tRNA_synthetase_318689..318919_POSITIVE 251 58 16 52 7 smit:SMT_138|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_89262..89492_POSITIVE 250 75 33 41 5 smit:SMT_725|5end_hypothetical_protein_630415..630645_NEGATIVE 249 88 50 107 73 smit:SMT_1675|5end_adenylosuccinate_synthetase_1661147..1661377_NEGATIVE 246 59 16 59 10 smit:SMT_1189|5end_phosphoribosylaminoimidazole_carboxylase_ATPase_subunit_1147754..1147984_NEGATIVE 245 80 36 128 74 smit:SMT_1205|5end_response_regulator_1165700..1165930_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 301 78 33 145 103 smit:SMT_991|3end_hypothetical_protein_934033..934183_NEGATIVE 283 92 51 144 96 smit:SMT_1421|3end_K02003_1406584..1406734_NEGATIVE 265 69 21 123 71 smit:SMT_395|3end_hypothetical_protein_325027..325177_POSITIVE 250 83 41 136 90 smit:SMT_1043|3end_chaperonin_GroEL_985110..985260_NEGATIVE 250 75 33 44 8 smit:SMT_726|3end_ImpB/MucB/SamB_family_protein_630412..630562_NEGATIVE 246 59 16 72 23 smit:SMT_1190|3end_phosphoribosylaminoimidazole_carboxylase,_catalytic_subunit_1147741..1147891_NEGATIVE 245 80 36 131 77 smit:SMT_1206|3end_similar_to_sensor_histidine_kinase_(AgrC_from_Staphylococcus)_1165697..1165847_NEGATIVE 244 88 41 148 91 smit:SMT_146|3end_sugar_transport_system_permease_protein_97382..97532_POSITIVE 244 88 41 148 91 smit:SMT_118|3end_K02026_multiple_sugar_transport_system_permease_protein_70433..70583_POSITIVE 241 77 33 127 80 smit:SMT_692|3end_hypothetical_protein_603008..603158_NEGATIVE 240 87 41 64 7 smit:SMT_188|3end_LSU_ribosomal_protein_L30P_123767..123917_POSITIVE 234 70 44 40 8 smit:SMT_147|3end_K02027_multiple_sugar_transport_system_substrate-binding_protein_98016..98166_POSITIVE 228 80 44 142 102 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 227 87 55 82 55 smit:SMT_810|3end_oxidoreductase_721108..721258_POSITIVE 226 83 57 124 99 smit:SMT_2042|3end_K04077_chaperonin_GroEL_(Hsp60)_1952960..1953110_NEGATIVE 222 79 33 111 67 smit:SMT_195|3end_30S_ribosomal_protein_S13_127322..127472_POSITIVE 220 52 17 151 105 smit:SMT_921|3end_putative_PP2C_protein_phosphatase_874498..874648_NEGATIVE 220 75 31 127 76 smit:SMT_535|3end_hypothetical_protein_454456..454606_POSITIVE 218 69 23 122 68 smit:SMT_1144|3end_K02026_multiple_sugar_transport_system_permease_protein_1089144..1089294_POSITIVE 218 93 64 64 32 smit:SMT_986|3end_threonyl-tRNA_synthetase_931684..931834_POSITIVE