Origin IGS: ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagataatcgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactgggtagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaagagcacgcgcctatgaatctcttgtagagaaaggattacccatgctgaaatgcagataaatgggcagtctcgtcctatatcnnnnnttaattaattaannnnnagcagcagtcgcttcacgttcgctcgcgtatcggtgattcattctgctacccagtaaggcaaccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagcgattatctatacaatggttcctcgaaaattgattttcaaacaggataccaa Mask Tandem Repeat Region ================================================ ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagataatcgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactgggtagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Find is-nt database================================================ Query_seq: SMT_1857:SMT_1858|SMT_1857:SMT_1858:hypothetical protein:K03497 chromosome partitioning protein, ParB family:-><-:1821206..1821776 571 ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagataatcgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactgggtagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1857:SMT_1858|SMT_1857:SMT_1858:hypothetical protein:K03497 chromosome partitioning protein, ParB family:-><-:1821206..1821776 571 ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagataatcgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactgggtagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1857:SMT_1858|SMT_1857:SMT_1858:hypothetical protein:K03497 chromosome partitioning protein, ParB family:-><-:1821206..1821776 571 ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagataatcgctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcggggttgccttactgggtagcagaatgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 149 Max: 416 Len: 268 Subject: UniRef90_Q19NK3 Cluster: Hypothetical protein; n=2; root|Rep: Hypothetical protein - Escherichia coli O1:K1 / APEC HSP 1 e-value: 3.0E-10 bit: 67.4 Len: 105 Query Start:312 Query End:416 Subject Strand: null Subject Start: 78 Subject End: 112 ....................................................................................................................................................................................................................................................................................................................... R R K E H S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ........................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................... R T R R I S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ........................................................................................................................................................... Subject: UniRef90_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE - Myxococcus xanthus HSP 1 e-value: 8.0E-7 bit: 55.8 Len: 168 Query Start:149 Query End:316 Subject Strand: null Subject Start: 266 Subject End: 322 .................................................................................................................................................... C I N E S A N A R G E A V C V L G A L P L P R S L T R C A R S F G C G E R Y Q L - T Q R R * Y G Y P Q N Q G I T Q ............................................................................................................................................................................................................................................................... .................................................................................................................................................... C I R D P A T A R S E A V W V L V A L P L L R S R T R C V R S V G C G G A V S A H S P G R P Y G D P Q P Q G M A Q ............................................................................................................................................................................................................................................................... ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 93 End: 221 ............................................................................................ M T I L A Q G D P L E S T C R H A S S A L M N R P T R G E R R F A Y W A L F R F L A H .............................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 77 End: 280 ............................................................................ M F P D L G D H P S T G G S S R V D L Q A C K L C I N E S A N A R G E A V C V L G A L P L P R S L T R C A R S F G C G E ................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 160 End: 360 ............................................................................................................................................................... M G Q R A G R G G L R I G R S S A S S L T D S L R S V V R L R R A V S A H S K A V I R L S T E S G D N A G K N I R A A L ................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 308 End: 424 ................................................................................................................................................................................................................................................................................................................... M T Q E R T F G Q R W V L A T G A H D R A P V V E D P A R L A G L P Y W V A E ................................................................................................................................................... Protein_Len: 60 Strand: - Start: 221 End: 475 ............................................................................................................................................................................................................................ L I L P Y R L F S C E P L T P D Q G R T R M I T S R D N L V R S P Q R P Q R V P Y C F S D G I R S R V H L S Q Q X X X M ................................................................................................ Protein_Len: 56 Strand: - Start: 1 End: 168 Q Y G T Q F D I K S S G N Y L Y D S E L V S P D Y S N G S R P S W G L V P P D E L T S R C A H L S Q M L S D A M ................................................................................................................................................................................................................................................................................................................................................................................................................... ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 43 HP_score: -3.7 Tail_Score: -2.70932 Start: 351 End: 374 Full_Region: GTTGGGTCCTGGCCA CGGGTGCGC ATGATC GTGCTCCTG TCGTTGAGGACCCGG ..............................................................................................................................................................................................................................................................................................................................................................CGGGTGCGCATGATCGTGCTCCTG..................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -2.7 Tail_Score: -2.90075 Start: 353 End: 372 Full_Region: TGGGTCCTGGCCACG GGTGCGC ATGATC GTGCTCC TGTCGTTGAGGACCC ................................................................................................................................................................................................................................................................................................................................................................GGTGCGCATGATCGTGCTCC....................................................................................................................................................................................................... Find igs database================================================ Query_seq: SMT_1857:SMT_1858|SMT_1857:SMT_1858:hypothetical protein:K03497 chromosome partitioning protein, ParB family:-><-:1821206..1821776 571 ttggtatcctgtttgaaaatcaattttcgaggaaccattgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt Intra-Species Hit: Count: 1 Min: 1 Max: 571 Len: 571 Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 1.0E-59 bit: 232.0 Len: 147 Query Start:425 Query End:571 Subject Strand: POSITIVE Subject Start: 425 Subject End: 571 ........................................................................................................................................................................................................................................................................................................................................................................................................................................tgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt ........................................................................................................................................................................................................................................................................................................................................................................................................................................tgaatcaccgatacgcgagcgaacgtgaagcgactgctgctnnnnnttaattaattaannnnngatataggacgagactgcccatttatctgcatttcagcatgggtaatcctttctctacaagagattcataggcgcgtgctcttt HSP 2 e-value: 4.0E-16 bit: 87.7 Len: 44 Query Start:1 Query End:44 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 ttggtatcctgtttgaaaatcaattttcgaggaaccattgtata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttggtatcctgtttgaaaatcaattttcgaggaaccattgtata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGGUAUCCUGUUUGAAAAUCAAUUUUCGAGGAACCAUUGUAUAGAUAAUCGCUUUCCAGCACACUGGGGUCAUAGCUGUUUCCUGAUCUAGGUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUAAUGAAUCGGCCAACGCGCGGGGAGAGGCGGUUUGCGUAUUGGGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGAGCGGUAUCAGCUCACUCAAAGGCGGUAAUACGGUUAUCCACAGAAUCAGGGGAUAACGCAGGAAAGAACAUUCGGGCAGCGUUGGGUCCUGGCCACGGGUGCGCAUGAUCGUGCUCCUGUCGUUGAGGACCCGGCUAGGCUGGCGGGGUUGCCUUACUGGGUAGCAGAAUGAAUCACCGAUACGCGAGCGAACGUGAAGCGACUGCUGCUNNNNNUUAAUUAAUUAANNNNNGAUAUAGGACGAGACUGCCCAUUUAUCUGCAUUUCAGCAUGGGUAAUCCUUUCUCUACAAGAGAUUCAUAGGCGCGUGCUCUUU .((((.((((...((((((....)))))))))))))).....(((((((...((((((.((...(((......))).(((..((((((((.(((((((...((((...(((.....)))))))..(((.(((((((((......)).)))).....(((.(.(((......(((((((..(((((...((((.....))))....))))))))))))..((((.((((((((((.(((....))))).))))))))))))....))).).))).))))))......)))))))...)).))))))..)))..)).)))))).......((((((.(((((((((((((.(((((.((((......)))).))))).))).))))))))))..(((.(((((.(((((((....))))))).................(((..((....))...))).))))))))....................................))))))..)))))))......((((((.((.......((((.....)))).......)).)))))).... (-201.94) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAGAGCACGCGCCUAUGAAUCUCUUGUAGAGAAAGGAUUACCCAUGCUGAAAUGCAGAUAAAUGGGCAGUCUCGUCCUAUAUCNNNNNUUAAUUAAUUAANNNNNAGCAGCAGUCGCUUCACGUUCGCUCGCGUAUCGGUGAUUCAUUCUGCUACCCAGUAAGGCAACCCCGCCAGCCUAGCCGGGUCCUCAACGACAGGAGCACGAUCAUGCGCACCCGUGGCCAGGACCCAACGCUGCCCGAAUGUUCUUUCCUGCGUUAUCCCCUGAUUCUGUGGAUAACCGUAUUACCGCCUUUGAGUGAGCUGAUACCGCUCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCCCAAUACGCAAACCGCCUCUCCCCGCGCGUUGGCCGAUUCAUUAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCACCUAGAUCAGGAAACAGCUAUGACCCCAGUGUGCUGGAAAGCGAUUAUCUAUACAAUGGUUCCUCGAAAAUUGAUUUUCAAACAGGAUACCAA ....(((((((....(((((((...(((((.((..(((((.(((((.(((.....)))....))))).)))))..)))))))..........................((((..(((((.(((.((((((.((((.(((((..(((...((((........(((((.....((.((((......(((((((...(.((.((.((.(......).)).)).)).)..)))))))...))))..))............((((((((((.(.......).)))))).)))).....)))))...((((((.......)))))).))))..)))..)))))))))))))))...))))))))....((((.((((.((..............))))))..))))..))))...)))))))...(((((.((......)))))))(((((..(((((..((((..((((...))))..))))..)))))...(....).....)))))...))))))).....................((((((((.(((((....)))))....)))).)))). (-180.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1205 210 161 133 84 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1205 210 161 227 178 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 1205 210 161 227 178 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 1205 210 161 227 178 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 1205 210 161 201 152 smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE 1117 150 101 231 182 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 1117 150 101 204 155 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 1117 150 101 222 173 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 1117 150 101 167 118 smit:SMT_1961|5end_K07485_transposase_1894206..1894436_POSITIVE 1117 150 101 167 118 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 1117 150 101 211 162 smit:SMT_1954|5end_6-phospho-beta-glucosidase_1888548..1888778_POSITIVE 1117 150 101 202 153 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 1117 150 101 216 167 smit:SMT_1155|5end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099665..1099895_NEGATIVE 1117 150 101 88 39 smit:SMT_464|5end_ribonuclease_Z_402867..403097_POSITIVE 1117 150 101 167 118 smit:SMT_388|5end_branched-chain_amino_acid_transport_system_II_carrier_protein_321172..321402_POSITIVE 1072 138 91 231 184 smit:SMT_1686|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1670175..1670405_POSITIVE 1045 130 81 226 177 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 1016 110 61 206 157 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 852 95 51 188 140 smit:SMT_621|5end_K03346_replication_initiation_and_membrane_attachment_protein_528794..529024_POSITIVE 852 95 51 112 64 smit:SMT_620|5end_hypothetical_protein_predicted_by_Glimmer/Critica_528718..528948_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1234 260 211 55 6 smit:SMT_780|3end_peptidase_family_U32_688752..688902_NEGATIVE 1189 390 341 81 32 smit:SMT_478|3end_hypothetical_protein_predicted_by_Glimmer/Critica_415257..415407_POSITIVE 1103 190 141 73 24 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE 1095 180 131 68 19 smit:SMT_1956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1889537..1889687_NEGATIVE 1054 380 332 49 1 smit:SMT_2025|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1940995..1941145_NEGATIVE 953 350 301 63 14 smit:SMT_1874|3end_hypothetical_protein_1832623..1832773_NEGATIVE 913 420 371 69 22 smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE 627 95 63 33 1 smit:SMT_619|3end_riboflavin_kinase_/_FMN_adenylyltransferase_528719..528869_POSITIVE 508 277 252 26 1 smit:SMT_1968|3end_transcription-repair_coupling_factor_1899951..1900101_NEGATIVE 452 389 343 69 16 smit:SMT_904|3end_hypothetical_protein_852294..852444_NEGATIVE 426 210 161 56 8 smit:SMT_2001|3end_membrane_protease_protein_family_1923889..1924039_POSITIVE 423 210 163 46 1 smit:SMT_2016|3end_tyrosine_recombinase_1933021..1933171_NEGATIVE 423 210 163 46 1 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 423 210 163 46 1 smit:SMT_1886|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1841198..1841348_POSITIVE 423 210 163 46 1 smit:SMT_1658|3end_hypothetical_protein_1648937..1649087_POSITIVE 423 210 163 46 1 smit:SMT_1558|3end_hypothetical_protein_1543855..1544005_NEGATIVE 423 210 163 46 1 smit:SMT_1155|3end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099183..1099333_NEGATIVE 417 253 212 84 30 smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE 413 249 201 139 85 smit:SMT_977|3end_conserved_hypothetical_protein,_Rrf2_family_protein_925252..925402_NEGATIVE 408 192 171 22 1 smit:SMT_463|3end_para-aminobenzoate_synthetase_component_I_/_4-amino-4-deoxychorismate_lyase_402839..402989_POSITIVE