Origin IGS: aaatccagtttgagcttgkttaatttctattttcttaccatcttggtaggcagaccaacctttgtcataaggaatggtgaagaaaatagatgtatcttgttggacatcatatgtagcaaaaaccttgtttttagaagttgatactgttacaggttgttctttgattttttgaatagcctcagttaaagtttgggtatctaaacgatagaaggtaggagattcaaatgatacttgtgaatttcccagggaaaactaacattgatattgaaagtttttttctcttttgtatatcctagattaaagaaggagaaggcattatcagttgtaaaagtctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcattctgctaaccagtaaggcacccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacattcgggcagcgttgggtcctggccacgggtgcgcatgatcgtgctcctgtcgttgaggacccggctaggctggcgggggtgccttactggttagcagaatgaaatcacgatacccgagcgaacgtgaagcgactgctgctgcaaaacgtctgcgaannnnnttaattaattaannnnnagacttttacaactgataatgccttctccttctttaatctaggatatacaaaagagaaaaaaactttcaatatcaatgttagttttccctgggaaattcacaagtatcatttgaatctcctaccttctatcgtttagatacccaaactttaactgaggctattcaaaaaatcaaagaacaacctgtaacagtatcaacttctaaaaacaaggtttttgctacatatgatgtccaacaagatacatctattttcttcaccattccttatgacaaaggttggtctgcctaccaagatggtaagaaaatagaaattaamcaagctcaaactggattt Mask Tandem Repeat Region ================================================ aaatccagtttgagcttgkttaatttctattttcttaccatcttggtaggcagaccaacctttgtcataaggaatggtgaagaaaatagatgtatcttgttggacatcatatgtagcaaaaaccttgtttttagaagttgatactgttacaggttgttctttgattttttgaatagcctcagttaaagtttgggtatctaaacgatagaaggtaggagattcaaatgatacttgtgaatttcccagggaaaactaacattgatattgaaagtttttttctcttttgtatatcctagattaaagaaggagaaggcattatcagttgtaaaagtctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcattctgctaaccagtaaggcacccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Find is-nt database================================================ Query_seq: SMT_1851:SMT_1852|SMT_1851:SMT_1852:ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme:<-<-:1815812..1816556 745 aaatccagtttgagcttgkttaatttctattttcttaccatcttggtaggcagaccaacctttgtcataaggaatggtgaagaaaatagatgtatcttgttggacatcatatgtagcaaaaaccttgtttttagaagttgatactgttacaggttgttctttgattttttgaatagcctcagttaaagtttgggtatctaaacgatagaaggtaggagattcaaatgatacttgtgaatttcccagggaaaactaacattgatattgaaagtttttttctcttttgtatatcctagattaaagaaggagaaggcattatcagttgtaaaagtctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcattctgctaaccagtaaggcacccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1851:SMT_1852|SMT_1851:SMT_1852:ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme:<-<-:1815812..1816556 745 aaatccagtttgagcttgkttaatttctattttcttaccatcttggtaggcagaccaacctttgtcataaggaatggtgaagaaaatagatgtatcttgttggacatcatatgtagcaaaaaccttgtttttagaagttgatactgttacaggttgttctttgattttttgaatagcctcagttaaagtttgggtatctaaacgatagaaggtaggagattcaaatgatacttgtgaatttcccagggaaaactaacattgatattgaaagtttttttctcttttgtatatcctagattaaagaaggagaaggcattatcagttgtaaaagtctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcattctgctaaccagtaaggcacccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1851:SMT_1852|SMT_1851:SMT_1852:ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme:<-<-:1815812..1816556 745 aaatccagtttgagcttgkttaatttctattttcttaccatcttggtaggcagaccaacctttgtcataaggaatggtgaagaaaatagatgtatcttgttggacatcatatgtagcaaaaaccttgtttttagaagttgatactgttacaggttgttctttgattttttgaatagcctcagttaaagtttgggtatctaaacgatagaaggtaggagattcaaatgatacttgtgaatttcccagggaaaactaacattgatattgaaagtttttttctcttttgtatatcctagattaaagaaggagaaggcattatcagttgtaaaagtctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcattctgctaaccagtaaggcacccccgccagcctagccgggtcctcaacgacaggagcacgatcatgcgcacccgtggccaggacccaacgctgcccgaatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 11 Min: 1 Max: 689 Len: 689 Subject: UniRef90_Q04HU7 Cluster: ABC transporter, permease protein, putative; n=4; Streptococcus pneumoniae|Rep: ABC transporter, permease protein, putative - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 285 Query Start:1 Query End:285 Subject Strand: null Subject Start: 710 Subject End: 803 K R E K N F Q Y Q C * F S L G N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K E K K T F N I N V S F P - G N S Q V S F E S P T F Y R L D T K T F T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I K Q A Q T G F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-8 bit: 62.8 Len: 87 Query Start:246 Query End:332 Subject Strand: null Subject Start: 694 Subject End: 722 ..................................................................................................................................................................................................................................................... T F T T D N A F S F F N L G Y T K E K K T F N I N V S F P ............................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................... T F T T D N V F S F F N L G Y T K E K K T F N I N V S F P ............................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q5LXI2 Cluster: ABC transporter permease protein; n=3; Streptococcus thermophilus|Rep: ABC transporter permease protein - Streptococcus thermophilus (strain CNRZ 1066) HSP 1 e-value: 2.0E-21 bit: 90.9 Len: 243 Query Start:1 Query End:243 Subject Strand: null Subject Start: 733 Subject End: 813 G N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G N K A I S F D N P S F Y A L D T Q N Y K I A M D T I N E R D T K V T T S K N K V F T D Y S S H K N A S L F F T I P Y D K G W T A T V N N K N V K I H R A Q K G F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-21 bit: 34.7 Len: 78 Query Start:246 Query End:323 Subject Strand: null Subject Start: 707 Subject End: 732 ..................................................................................................................................................................................................................................................... T D N A F S F F N L G Y T K E K K T F N I N V S F P ...................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................... T D N T F D F F D L G Y F E T E E A I T I N L N F P ...................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3CRC9 Cluster: ABC transporter, permease component (Possible copper exporter), putative; n=1; Streptococcus sanguinis SK36|Rep: ABC transporter, permease component (Possible copper exporter), putative - Streptococcus sanguinis (strain SK36) HSP 1 e-value: 3.0E-21 bit: 90.5 Len: 240 Query Start:1 Query End:240 Subject Strand: null Subject Start: 734 Subject End: 813 N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N S T V S F D T P E F F A V N T E Q Y Q N V I Q K L K E Q P V S T T T D L N T V K T N Y R A E K D T S L F F T I P Y D K G W S A T L N G E P V T L K R A Q N G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-21 bit: 34.7 Len: 84 Query Start:246 Query End:329 Subject Strand: null Subject Start: 705 Subject End: 732 ..................................................................................................................................................................................................................................................... F T T D N A F S F F N L G Y T K E K K T F N I N V S F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................... Y T T N N V F P F F N A G Y F S Q S Q T V S I R F T F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q1J436 Cluster: ABC transporter, permease protein; n=12; Streptococcus pyogenes|Rep: ABC transporter, permease protein - Streptococcus pyogenes serotype M4 (strain MGAS10750) HSP 1 e-value: 5.0E-17 bit: 76.3 Len: 240 Query Start:1 Query End:240 Subject Strand: null Subject Start: 730 Subject End: 809 N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N K Q I S F K E P H F Y S L S I E S Y L E A M N S I K Q K N V H T Y A K S N T V I T D Y N S K T K G S L I F T L P Y D K G W S A Q K D G K N L P V K K A Q G G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-17 bit: 34.7 Len: 84 Query Start:246 Query End:329 Subject Strand: null Subject Start: 701 Subject End: 728 ..................................................................................................................................................................................................................................................... F T T D N A F S F F N L G Y T K E K K T F N I N V S F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................... Y T T D N A Y S F F D L G Y F A D A K V A T F S F V F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q2ZZR4 Cluster: Hypothetical protein precursor; n=1; Streptococcus suis 89/1591|Rep: Hypothetical protein precursor - Streptococcus suis 89/1591 HSP 1 e-value: 2.0E-16 bit: 78.2 Len: 240 Query Start:1 Query End:240 Subject Strand: null Subject Start: 729 Subject End: 808 N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N N Q V S F D K P Q F Y R L D L L A F Q Q A I S I L Q E K Q V V T K T D G N K V T V D F V T D K E A S L L L T L P Y D K G W N A T I D G K P I K I Q K V Q E G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-16 bit: 31.2 Len: 84 Query Start:246 Query End:329 Subject Strand: null Subject Start: 700 Subject End: 727 ..................................................................................................................................................................................................................................................... F T T D N A F S F F N L G Y T K E K K T F N I N V S F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................... F T L D N A F S F F N V G S F T T D V Q V Q V D V Y F P ................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q3D2T2 Cluster: ABC transporter, permease protein, putative; n=8; Streptococcus agalactiae|Rep: ABC transporter, permease protein, putative - Streptococcus agalactiae H36B HSP 1 e-value: 3.0E-16 bit: 77.8 Len: 240 Query Start:1 Query End:240 Subject Strand: null Subject Start: 732 Subject End: 811 N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N D Q V S F P I P H F Y G L K L E A Y K K A M T V I N K R K V K V R T D H N K V I A N Y T S P N R S S L F F T I P Y D R G W K A Y Q N N K G I K I F K T Q K G F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-16 bit: 30.4 Len: 81 Query Start:246 Query End:326 Subject Strand: null Subject Start: 704 Subject End: 730 ..................................................................................................................................................................................................................................................... T T D N A F S F F N L G Y T K E K K T F N I N V S F P ................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................... T L D N A Y S F F N I G S F A E N S R I K V K F Q F P ................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8DRQ9 Cluster: Hypothetical protein; n=1; Streptococcus mutans|Rep: Hypothetical protein - Streptococcus mutans HSP 1 e-value: 3.0E-14 bit: 81.3 Len: 285 Query Start:4 Query End:288 Subject Strand: null Subject Start: 715 Subject End: 808 ... Y K R E K N F Q Y Q C * F S L G N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... Y K K T Q T L I F K L S F P K - N K T V S Y D L P H I Y A L D L T A Y Q K S I K Q L K S Q T V K T T T K K N K I F T T Y V A K K R T S L I Y T L P Y D K G W F A K Q N G K A I K I S K A Q N G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q19NK3 Cluster: Hypothetical protein; n=2; root|Rep: Hypothetical protein - Escherichia coli O1:K1 / APEC HSP 1 e-value: 5.0E-10 bit: 67.4 Len: 105 Query Start:422 Query End:526 Subject Strand: null Subject Start: 78 Subject End: 112 ..................................................................................................................................................................................................................................................................................................................................................................................................................................... R R K E H S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ........................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................... R T R R I S G S V G S W P R V R M I V L L S L R T R L G W R G C L T G ........................................................................................................................................................................................................................... Subject: UniRef90_Q839W8 Cluster: Membrane protein, putative; n=1; Enterococcus faecalis|Rep: Membrane protein, putative - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 4.0E-8 bit: 57.4 Len: 216 Query Start:28 Query End:243 Subject Strand: null Subject Start: 738 Subject End: 809 ........................... G N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................... G T K A V S F V Q P Q V V G L N T N A F E K A I S A V Q E K G V D L T T G K R S A S G T F T A D K D Q V L V T T I P Y D K G W R V K I D G K K V ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-8 bit: 23.5 Len: 57 Query Start:249 Query End:305 Subject Strand: null Subject Start: 718 Subject End: 736 ........................................................................................................................................................................................................................................................ F F N L G Y T K E K K T F N I N V S F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................ Y Y N L G Y Y P K D T T V N F K V S F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q3XYV7 Cluster: Membrane protein, putative precursor; n=1; Enterococcus faecium DO|Rep: Membrane protein, putative precursor - Enterococcus faecium DO HSP 1 e-value: 4.0E-7 bit: 57.8 Len: 243 Query Start:1 Query End:243 Subject Strand: null Subject Start: 739 Subject End: 819 G N S Q V S F E S P T F Y R L D T Q T L T E A I Q K I K E Q P V T V S T S K N K V F A T Y D V Q Q D T S I F F T I P Y D K G W S A Y Q D G K K I E I X Q A Q T G F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G T K E I S F M E P K V V G L D V V A Y Q A A M N Q I K E K G V E M E A T G R K A S G T V N T A E D S M L V T T I P Y D K G W K A K I D G K P V K V S N F K D A F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE - Myxococcus xanthus HSP 1 e-value: 1.0E-6 bit: 55.8 Len: 168 Query Start:522 Query End:689 Subject Strand: null Subject Start: 266 Subject End: 322 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C I N E S A N A R G E A V C V L G A L P L P R S L T R C A R S F G C G E R Y Q L - T Q R R * Y G Y P Q N Q G I T Q ........................................................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C I R D P A T A R S E A V W V L V A L P L L R S R T R C V R S V G C G G A V S A H S P G R P Y G D P Q P Q G M A Q ........................................................ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 10 End: 138 ......... M S L X N F Y F L T I L V G R P T F V I R N G E E N R C I L L D I I C S K N L V F R S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 74 End: 169 ......................................................................... M V K K I D V S C W T S Y V A K T L F L E V D T V T G C S L I F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: + Start: 238 End: 348 ............................................................................................................................................................................................................................................. M S Q G K L T L I L K V F F S F V Y P R L K K E K A L S V V K V X X L I N ............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 347 End: 445 .......................................................................................................................................................................................................................................................................................................................................................... M X X X R R R F A A A V A S R S L G Y R D F I L L T S K A P P P A ............................................................................................................................................................................................................................................................................................................ Protein_Len: 48 Strand: + Start: 474 End: 617 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M M R T R G Q D P T L P E C S F L R Y P L I L W I T V L P P L S E L I P L A A A E R P S A A S Q ................................................................................................................................ Protein_Len: 43 Strand: - Start: 617 End: 745 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ H A L F R F L A W Y A F R R E G R T P R N M L A S S A H R C T S E L P D G Q A L I T M Protein_Len: 50 Strand: - Start: 558 End: 707 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R R Q T L Q Y R E G C G F S R A C R T L S R P L P L A G L V C V A E G R A N A S E N I C L K C A Q M ...................................... Protein_Len: 60 Strand: - Start: 478 End: 678 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L A A R I N K G A N D G S E T S L R I V A K S H A S V A R R L R V V S R L S D T L S S A S S R G I R L G G R G A R Q G M ................................................................... Protein_Len: 39 Strand: - Start: 414 End: 530 ............................................................................................................................................................................................................................................................................................................................................................................................................................. E A L W Y P V G A L R A P D E V V P A R D H A G T A L V W R Q G F T R E Q T M ....................................................................................................................................................................................................................... Protein_Len: 48 Strand: - Start: 201 End: 344 ........................................................................................................................................................................................................ V I S P L L N L H Y K H I E W P F S V N I N F T K K E K T Y G L N F F S F A N D T T F T X X X M ................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: - Start: 30 End: 119 ............................. K R V M K T P L G V K T M L F P S S F L H I K N S M M H L M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 246 Y P I T F F I S T D Q Q V D Y T A F V K N K S T S V T V P Q E K I K Q I A E T L T Q T D L R Y F T P S E F S V Q S N G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 159 End: 188 ..............................................................................................................................................................TTTGATTTTTTGAATAGCCTCAGTTAAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1851:SMT_1852|SMT_1851:SMT_1852:ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme:<-<-:1815812..1816556 745 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctnnnnnttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Intra-Species Hit: Count: 13 Min: 340 Max: 745 Len: 406 Subject: smit_SMT_1851_SMT_1852|ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme|NEGATIVE:NEGATIVE|[1815812,1816556]|745 HSP 1 e-value: 6.0E-25 bit: 117.0 Len: 74 Query Start:340 Query End:413 Subject Strand: POSITIVE Subject Start: 340 Subject End: 413 ...................................................................................................................................................................................................................................................................................................................................................ttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttca............................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................ttaattaattaannnnnttcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcgtgatttca............................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 691 Subject End: 745 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 551 Subject End: 605 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 218 Subject End: 265 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 17 Subject End: 71 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: NEGATIVE Subject Start: 513 Subject End: 560 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 404 Subject End: 458 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 71 Subject End: 118 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 493 Subject End: 547 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: NEGATIVE Subject Start: 833 Subject End: 880 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 108 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: NEGATIVE Subject Start: 394 Subject End: 441 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 132 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: NEGATIVE Subject Start: 418 Subject End: 465 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1884_SMT_1885|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1839299,1839919]|621 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 551 Subject End: 605 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 3.0E-11 bit: 71.9 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 219 Subject End: 265 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttt-gcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 147 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-7 bit: 58.0 Len: 33 Query Start:373 Query End:405 Subject Strand: NEGATIVE Subject Start: 433 Subject End: 465 ....................................................................................................................................................................................................................................................................................................................................................................................agcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................agcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 923 Subject End: 977 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 590 Subject End: 637 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 637 Subject End: 691 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 304 Subject End: 351 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: POSITIVE Subject Start: 1231 Subject End: 1285 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 898 Subject End: 945 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 55 Query Start:691 Query End:745 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 191 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcac HSP 2 e-value: 8.0E-18 bit: 93.7 Len: 47 Query Start:691 Query End:737 Subject Strand: POSITIVE Subject Start: 855 Subject End: 901 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg........ ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcttgcatgcctgcaggtcgactctagaggatccccctgtgctagg........ HSP 3 e-value: 5.0E-16 bit: 87.7 Len: 48 Query Start:358 Query End:405 Subject Strand: POSITIVE Subject Start: 522 Subject End: 569 .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgggtatcg.................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tcgcagacgttttgcagcagcagtcgcttcacgttcgctcgcgtatcg.................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAUUAAUUAANNNNNUUCGCAGACGUUUUGCAGCAGCAGUCGCUUCACGUUCGCUCGGGUAUCGUGAUUUCAUUCUGCUAACCAGUAAGGCACCCCCGCCAGCCUAGCCGGGUCCUCAACGACAGGAGCACGAUCAUGCGCACCCGUGGCCAGGACCCAACGCUGCCCGAAUGUUCUUUCCUGCGUUAUCCCCUGAUUCUGUGGAUAACCGUAUUACCGCCUUUGAGUGAGCUGAUACCGCUCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCCCAAUACGCAAACCGCCUCUCCCCGCGCGUUGGCCGAUUCAUUAAUGCAGAGCUUGCAUGCCUGCAGGUCGACUCUAGAGGAUCCCCCUGUGCUAGGAUGGUCAC ..........................((((((((((((.(((....(((((...((....))..)))))....)))))))).....)))))))......((((.(((((((((((((((...(((.((..(..(..((((......))))..)..)..))..(((((((((..(((((....(((((((((((.(.......).))))))).................((((((.......)))))).))))..)))))..)).).)))))).))).....(((.(((.((((....(((.......)))...))))...))).)))..(((((((..........(((((.((......))))))))))))))....)))))....)))).)))))).))))... (-128.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGACCAUCCUAGCACAGGGGGAUCCUCUAGAGUCGACCUGCAGGCAUGCAAGCUCUGCAUUAAUGAAUCGGCCAACGCGCGGGGAGAGGCGGUUUGCGUAUUGGGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGAGCGGUAUCAGCUCACUCAAAGGCGGUAAUACGGUUAUCCACAGAAUCAGGGGAUAACGCAGGAAAGAACAUUCGGGCAGCGUUGGGUCCUGGCCACGGGUGCGCAUGAUCGUGCUCCUGUCGUUGAGGACCCGGCUAGGCUGGCGGGGGUGCCUUACUGGUUAGCAGAAUGAAAUCACGAUACCCGAGCGAACGUGAAGCGACUGCUGCUGCAAAACGUCUGCGAANNNNNUUAAUUAAUUAA ((((.(((.(((((.((((((.((((((...........(((((((......)).)))))........((((((.....(((((((..(((((...((((.....))))....))))))))))))..((((.((((((((((.(((....))))).))))))))))))....((((.........((......))(((((((.(........))))))))................))))...(((((((((((((.(((((.((((......)))).))))).))).))))))))))..)))))).)))))).)))..))))))))....)))...)))).........(((.((((..((((.....)))).....)))).))).................... (-150.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1223 290 241 217 168 smit:SMT_1982|5end_conserved_hypothetical_protein_1913036..1913266_POSITIVE 1223 290 241 205 156 smit:SMT_1691|5end_putative_deoxyribonuclease_1674978..1675208_POSITIVE 1223 290 241 230 181 smit:SMT_1156|5end_K07485_transposase_1099938..1100168_POSITIVE 1203 330 281 208 159 smit:SMT_325|5end_K02029_polar_amino_acid_transport_system_permease_protein_263023..263253_NEGATIVE 1182 300 251 200 151 smit:SMT_1972|5end_uncharacterized_conserved_phage_related_protein_1903662..1903892_POSITIVE 1174 340 291 185 136 smit:SMT_1986|5end_mercuric_reductase_1914843..1915073_POSITIVE 1022 400 351 192 143 smit:SMT_959|5end_1-acyl-sn-glycerol-3-phosphate_acyltransferase_905283..905513_POSITIVE 967 120 71 227 178 smit:SMT_1888|5end_K02026_multiple_sugar_transport_system_permease_protein_1842088..1842318_POSITIVE 940 70 21 219 169 smit:SMT_1945|5end_putative_dihydrolipoamide_S-acetyltransferase_1879961..1880191_POSITIVE 917 380 335 229 184 smit:SMT_1914|5end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1859486..1859716_POSITIVE 775 340 301 230 192 smit:SMT_2045|5end_K+_transport_system,_NAD-binding_component_1956139..1956369_POSITIVE 445 69 23 63 3 smit:SMT_913|5end_putative_sucrose-specific_PTS_permease,_enzyme_II_865809..866039_NEGATIVE 422 270 221 173 116 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 401 400 380 220 200 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 396 368 321 137 76 smit:SMT_941|5end_hypothetical_protein_893558..893788_NEGATIVE 395 241 220 231 210 smit:SMT_2009|5end_GtrA_family_protein_1928973..1929203_POSITIVE 389 329 282 208 160 smit:SMT_2002|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1924405..1924635_NEGATIVE 389 329 282 208 160 smit:SMT_1942|5end_zinc_metalloprotease_ZmpB,_truncated_1877882..1878112_POSITIVE 389 329 282 229 181 smit:SMT_1885|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1840057..1840287_NEGATIVE 383 310 261 184 123 smit:SMT_1887|5end_LicC_protein_1841445..1841675_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1100 400 351 79 30 smit:SMT_2024|3end_hypothetical_protein_1940690..1940840_POSITIVE 1100 400 351 68 19 smit:SMT_2002|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1924145..1924295_NEGATIVE 1100 400 351 79 30 smit:SMT_1981|3end_K03696_ATP-dependent_Clp_protease_ATP-binding_subunit_ClpC_1912868..1913018_POSITIVE 1100 400 351 84 35 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 1100 400 351 68 19 smit:SMT_1966|3end_DNA_polymerase_III_alpha_subunit_1898328..1898478_POSITIVE 1100 400 351 79 30 smit:SMT_1942|3end_zinc_metalloprotease_ZmpB,_truncated_1878384..1878534_POSITIVE 1100 400 351 68 19 smit:SMT_1927|3end_cell_division_protein_FtsH_1868408..1868558_NEGATIVE 1100 400 351 79 30 smit:SMT_1926|3end_mevalonate_kinase_1868062..1868212_POSITIVE 1100 400 351 79 30 smit:SMT_1887|3end_LicC_protein_1841740..1841890_POSITIVE 1100 400 351 68 19 smit:SMT_1885|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1839830..1839980_NEGATIVE 1100 400 351 68 19 smit:SMT_1873|3end_K02006_cobalt_transport_system_ATP-binding_protein_1832351..1832501_POSITIVE 1100 400 351 84 35 smit:SMT_326|3end_K02029_polar_amino_acid_transport_system_permease_protein_263217..263367_NEGATIVE 1022 400 351 68 19 smit:SMT_958|3end_hypothetical_protein_predicted_by_Glimmer/Critica_905239..905389_POSITIVE 409 289 242 81 29 smit:SMT_481|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_417641..417791_NEGATIVE 373 319 277 47 6 smit:SMT_628|3end_glucose-1-phosphate_adenylyltransferase,_GlgD_subunit_534050..534200_POSITIVE 368 268 222 56 1 smit:SMT_173|3end_50S_ribosomal_protein_L2_117407..117557_POSITIVE 361 60 18 148 103 smit:SMT_1306|3end_alpha-glycerophosphate_oxidase_1271673..1271823_POSITIVE 361 250 201 120 73 smit:SMT_1304|3end_hypothetical_protein_1268137..1268287_POSITIVE 360 132 91 70 17 smit:SMT_1559|3end_6-phosphofructokinase_1544614..1544764_NEGATIVE 357 198 151 65 25 smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE