Origin IGS: atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aggtaatctcccttcttgttcaaatactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtataagttctatatgaagtatgactacagtatagcacttagaaattgaaagggaaaacttttgaatatatgcaacacacaaaataagcaaaaaaacgatagawcttttgtaatgacctgagagagatacagagttctatcgcttaaaatttcaaattattttcttagtttgcagatat Mask Tandem Repeat Region ================================================ atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Find is-nt database================================================ Query_seq: SMT_1781:SMT_1782|SMT_1781:SMT_1782:transcriptional regulator, xre family:hypothetical protein:->->:1759357..1759659 303 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1781:SMT_1782|SMT_1781:SMT_1782:transcriptional regulator, xre family:hypothetical protein:->->:1759357..1759659 303 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1781:SMT_1782|SMT_1781:SMT_1782:transcriptional regulator, xre family:hypothetical protein:->->:1759357..1759659 303 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 40 End: 138 ....................................... M E L C I S L R S L Q K X Y R F F A Y F V C C I Y S K V F P F N F ..................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 30 End: 152 ............................. M L S D R T L Y L S Q V I T K X L S F F C L F C V L H I F K S F P F Q F L S A I L ....................................................................................................................................................... Protein_Len: 34 Strand: + Start: 142 End: 243 ............................................................................................................................................. M L Y C S H T S Y R T Y T L R K S N S N Y V S F T L P Y S S T A F G ............................................................ Protein_Len: 60 Strand: + Start: 80 End: 301 ............................................................................... M V F L L I L C V A Y I Q K F S L S I S K C Y T V V I L H I E L I L F E N Q I Q T T S A S P C R T Q V Q P S A S F L V C .. atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 121 End: 150 ........................................................................................................................TTTTCCCTTTCAATTTCTAAGTGCTATACT......................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1781:SMT_1782|SMT_1781:SMT_1782:transcriptional regulator, xre family:hypothetical protein:->->:1759357..1759659 303 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Intra-Species Hit: Count: 35 Min: 1 Max: 303 Len: 303 Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 1.0E-157 bit: 556.0 Len: 303 Query Start:1 Query End:303 Subject Strand: POSITIVE Subject Start: 1 Subject End: 303 atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgnnnnnnngcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct atatctgcaaactaagaaaataatttgaaattttaagcgatagaactctgtatctctctcaggtcattacaaaagwtctatcgtttttttgcttattttgtgtgttgcatatattcaaaagttttccctttcaatttctaagtgctatactgtagtcatacttcatatagaacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatttgaacaagaagggagattacct Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 4.0E-45 bit: 183.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 4.0E-45 bit: 183.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 2.0E-43 bit: 177.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 203 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 5.0E-41 bit: 169.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 105 Subject End: 209 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 5.0E-41 bit: 169.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 224 Subject End: 328 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 209 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 108 Query Start:174 Query End:281 Subject Strand: POSITIVE Subject Start: 189 Subject End: 296 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt...................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 181 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 559 Subject End: 662 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 8.0E-40 bit: 165.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 130 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtat....................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 8.0E-40 bit: 165.0 Len: 107 Query Start:173 Query End:279 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 107 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagta........................ ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta........................ Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 110 Query Start:171 Query End:280 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 184 ..........................................................................................................................................................................aacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ..........................................................................................................................................................................aactaatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 101 Query Start:176 Query End:276 Subject Strand: POSITIVE Subject Start: 14 Subject End: 114 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattga........................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga........................... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 152 Subject End: 256 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 125 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 101 Query Start:176 Query End:276 Subject Strand: POSITIVE Subject Start: 14 Subject End: 114 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattga........................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga........................... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 217 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 101 Query Start:176 Query End:276 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 101 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattga........................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga........................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 50 Subject End: 153 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:177 Query End:281 Subject Strand: POSITIVE Subject Start: 19 Subject End: 123 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt...................... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 104 Subject End: 208 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat....................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 102 Query Start:179 Query End:280 Subject Strand: POSITIVE Subject Start: 55 Subject End: 156 ..................................................................................................................................................................................ctcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ..................................................................................................................................................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 110 Query Start:171 Query End:280 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 365 ..........................................................................................................................................................................aacttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ..........................................................................................................................................................................aactgatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat....................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 5.0E-29 bit: 129.0 Len: 109 Query Start:173 Query End:281 Subject Strand: NEGATIVE Subject Start: 44 Subject End: 151 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtatt...................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 227 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 154 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtat....................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 108 Query Start:172 Query End:279 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 107 ...........................................................................................................................................................................acttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagta........................ ...........................................................................................................................................................................acttatactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta........................ Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 2.0E-16 bit: 87.9 Len: 44 Query Start:236 Query End:279 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 195 ...........................................................................................................................................................................................................................................ccttcggctagcttcctagtttgctctttgattttcattgagta........................ ...........................................................................................................................................................................................................................................ccttcggctagcttcctagtttgctctttgattttcattgagta........................ HSP 2 e-value: 1.0E-11 bit: 72.0 Len: 48 Query Start:177 Query End:224 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta............................................................................... Subject: smit_SMT_763_SMT_764|alpha-amylase:alanyl-tRNA synthetase|POSITIVE:NEGATIVE|[669341,669584]|244 HSP 1 e-value: 2.0E-16 bit: 87.9 Len: 48 Query Start:233 Query End:280 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 133 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ........................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 2.0E-7 bit: 58.1 Len: 49 Query Start:176 Query End:224 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 237 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatctc-ttcaaacaacgtcagcttcaccttgccgta............................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 42 Query Start:240 Query End:281 Subject Strand: NEGATIVE Subject Start: 157 Subject End: 198 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttggtctttgattttcattgagtatt...................... HSP 2 e-value: 2.0E-10 bit: 68.0 Len: 38 Query Start:174 Query End:211 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 273 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagct............................................................................................ .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcagct............................................................................................ Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 3.0E-12 bit: 74.0 Len: 49 Query Start:233 Query End:281 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 61 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtatt...................... HSP 2 e-value: 4.0E-11 bit: 70.0 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 166 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................... Inter-species Hit: Count: 46 Min: 173 Max: 287 Len: 115 Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 9.0E-46 bit: 185.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 220 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 4.0E-45 bit: 183.0 Len: 104 Query Start:177 Query End:280 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 108 Query Start:174 Query End:281 Subject Strand: NEGATIVE Subject Start: 188 Subject End: 295 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtatt...................... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 108 Query Start:174 Query End:281 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 116 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt...................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:176 Query End:279 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 172 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagta........................ ...............................................................................................................................................................................atactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta........................ Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat....................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat....................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 191 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 158 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 197 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 8.0E-34 bit: 145.0 Len: 105 Query Start:176 Query End:280 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat....................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 8.0E-31 bit: 135.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 8.0E-31 bit: 135.0 Len: 108 Query Start:174 Query End:281 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 115 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt...................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 8.0E-31 bit: 135.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat....................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 106 Query Start:174 Query End:279 Subject Strand: POSITIVE Subject Start: 45 Subject End: 149 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagta........................ .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta........................ Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat....................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 104 Query Start:177 Query End:280 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ................................................................................................................................................................................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat....................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 108 Query Start:174 Query End:281 Subject Strand: POSITIVE Subject Start: 133 Subject End: 239 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtatt...................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 108 Query Start:174 Query End:281 Subject Strand: POSITIVE Subject Start: 133 Subject End: 239 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... .............................................................................................................................................................................ttatactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtatt...................... Subject: NC_003028_SP_0560_SP_0561|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[528030,528290]|261 HSP 1 e-value: 2.0E-16 bit: 87.9 Len: 48 Query Start:240 Query End:287 Subject Strand: POSITIVE Subject Start: 210 Subject End: 257 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatttgaaca................ ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtattagaaca................ HSP 2 e-value: 3.0E-6 bit: 54.1 Len: 47 Query Start:174 Query End:220 Subject Strand: POSITIVE Subject Start: 54 Subject End: 99 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgc................................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................... Subject: NC_008533_SPD_0486_SPD_0487|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[494216,494515]|300 HSP 1 e-value: 3.0E-15 bit: 83.9 Len: 42 Query Start:240 Query End:281 Subject Strand: POSITIVE Subject Start: 249 Subject End: 290 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... HSP 2 e-value: 3.0E-6 bit: 54.1 Len: 47 Query Start:174 Query End:220 Subject Strand: POSITIVE Subject Start: 93 Subject End: 138 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgc................................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................... Subject: NC_003098_spr0484_spr0485|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[486549,486985]|437 HSP 1 e-value: 3.0E-15 bit: 83.9 Len: 42 Query Start:240 Query End:281 Subject Strand: POSITIVE Subject Start: 386 Subject End: 427 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... HSP 2 e-value: 3.0E-6 bit: 54.1 Len: 47 Query Start:174 Query End:220 Subject Strand: POSITIVE Subject Start: 230 Subject End: 275 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgc................................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgc................................................................................... Subject: NC_008533_SPD_1201_SPD_1202|phosphotransferase LicD3:Psr protein|NEGATIVE:NEGATIVE|[1231002,1231279]|278 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 49 Query Start:233 Query End:281 Subject Strand: POSITIVE Subject Start: 227 Subject End: 275 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtatt...................... HSP 2 e-value: 3.0E-9 bit: 64.1 Len: 52 Query Start:173 Query End:224 Subject Strand: POSITIVE Subject Start: 120 Subject End: 170 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_008533_SPD_1086_SPD_1087|A/G-specific adenine glycosylase:formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1117070,1117397]|328 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 130 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 4.0E-11 bit: 70.0 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 244 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctt-ttcaaactacgtcagcttcaccttgccgta............................................................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 49 Query Start:233 Query End:281 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2011 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt...................... HSP 2 e-value: 4.0E-11 bit: 70.0 Len: 51 Query Start:174 Query End:224 Subject Strand: POSITIVE Subject Start: 1858 Subject End: 1908 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................... Subject: NC_003098_spr1225_spr1226|LicD1 paralog:hypothetical protein|NEGATIVE:NEGATIVE|[1223471,1223748]|278 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 49 Query Start:233 Query End:281 Subject Strand: POSITIVE Subject Start: 227 Subject End: 275 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtatt...................... HSP 2 e-value: 3.0E-9 bit: 64.1 Len: 52 Query Start:173 Query End:224 Subject Strand: POSITIVE Subject Start: 120 Subject End: 170 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003098_spr1108_spr1109|Similar to A/G-specific adenine glycosylase:Formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1109539,1109866]|328 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 130 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 4.0E-11 bit: 70.0 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 244 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctt-ttcaaactacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_1367_SP_1368|licD3 protein:psr protein|NEGATIVE:NEGATIVE|[1290910,1291187]|278 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 49 Query Start:233 Query End:281 Subject Strand: POSITIVE Subject Start: 227 Subject End: 275 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctgcggctagcttcctagtttgcactttgattttcattgagtatt...................... HSP 2 e-value: 3.0E-9 bit: 64.1 Len: 52 Query Start:173 Query End:224 Subject Strand: POSITIVE Subject Start: 120 Subject End: 170 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_1228_SP_1229|A/G-specific adenine glycosylase:formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1161361,1161717]|357 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 160 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 4.0E-11 bit: 70.0 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 273 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaactacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 49 Query Start:233 Query End:281 Subject Strand: POSITIVE Subject Start: 648 Subject End: 696 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtatt...................... ........................................................................................................................................................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtatt...................... HSP 2 e-value: 7.0E-10 bit: 66.1 Len: 49 Query Start:176 Query End:224 Subject Strand: POSITIVE Subject Start: 545 Subject End: 593 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta............................................................................... Subject: NC_003098_spr1709_spr1710|Dextransucrase (sucrose 6-glucosyltransferase):ABC transporter membrane spanning permease - multiple sugars|NEGATIVE:NEGATIVE|[1682434,1682790]|357 HSP 1 e-value: 4.0E-14 bit: 80.0 Len: 40 Query Start:240 Query End:279 Subject Strand: POSITIVE Subject Start: 318 Subject End: 357 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ HSP 2 e-value: 3.0E-9 bit: 64.1 Len: 52 Query Start:173 Query End:224 Subject Strand: POSITIVE Subject Start: 205 Subject End: 255 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_1894_SP_1895|sucrose phosphorylase:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1801040,1801396]|357 HSP 1 e-value: 4.0E-14 bit: 80.0 Len: 40 Query Start:240 Query End:279 Subject Strand: POSITIVE Subject Start: 318 Subject End: 357 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ HSP 2 e-value: 3.0E-9 bit: 64.1 Len: 52 Query Start:173 Query End:224 Subject Strand: POSITIVE Subject Start: 205 Subject End: 255 ............................................................................................................................................................................cttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ............................................................................................................................................................................cttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 4.0E-14 bit: 80.0 Len: 40 Query Start:240 Query End:279 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 40 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................ HSP 2 e-value: 3.0E-6 bit: 54.1 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 197 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta............................................................................... Subject: NC_008533_SPD_0803_SPD_0804|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[820178,821149]|972 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 81 Subject End: 185 ...............................................................................................................................................................................atactcttcgaaaatcaaatt-caaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactattcaaaaatcaaagtgcaaactatgtcaacttcacattgccg-actaaattacagcctgtggctggcttcctagtttgcactttgatttttattgagtat....................... Subject: NC_008533_SPD_0781_SPD_0782|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[793779,794285]|507 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 42 Query Start:240 Query End:281 Subject Strand: NEGATIVE Subject Start: 252 Subject End: 293 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgaatatt...................... HSP 2 e-value: 1.0E-8 bit: 62.1 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 406 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003098_spr0810_spr0811|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[812648,813000]|353 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 81 Subject End: 185 ...............................................................................................................................................................................atactcttcgaaaatcaaatt-caaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactattcaaaaatcaaagtgcaaactatgtcaacttcacattgccg-actaaattacagcctgtggctggcttcctagtttgcactttgatttttattgagtat....................... Subject: NC_003098_spr0789_spr0790|hypothetical protein:Type I restriction modification enzyme methylase subunit|POSITIVE:POSITIVE|[786248,786754]|507 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 42 Query Start:240 Query End:281 Subject Strand: NEGATIVE Subject Start: 252 Subject End: 293 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgaatatt...................... HSP 2 e-value: 1.0E-8 bit: 62.1 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 406 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_0910_SP_0911|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[863735,864087]|353 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 105 Query Start:176 Query End:280 Subject Strand: NEGATIVE Subject Start: 81 Subject End: 185 ...............................................................................................................................................................................atactcttcgaaaatcaaatt-caaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................atactattcaaaaatcaaagtgcaaactatatcaacttcacattgccg-actaaattacagcctgcggctggcttcctagtttgcactttgatttttattgagtat....................... Subject: NC_003028_SP_0885_SP_0886|hypothetical protein:type I restriction-modification system, M subunit, putative|POSITIVE:POSITIVE|[834569,835074]|506 HSP 1 e-value: 7.0E-13 bit: 76.0 Len: 42 Query Start:240 Query End:281 Subject Strand: NEGATIVE Subject Start: 252 Subject End: 293 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtatt...................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgaatatt...................... HSP 2 e-value: 1.0E-8 bit: 62.1 Len: 51 Query Start:174 Query End:224 Subject Strand: NEGATIVE Subject Start: 356 Subject End: 405 .............................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... .............................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_008533_SPD_1568_SPD_1569|GTP cyclohydrolase, putative:aquaporin|POSITIVE:NEGATIVE|[1586901, 1587379]|479 HSP 1 e-value: 3.0E-12 bit: 74.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 45 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctaacttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 2.0E-7 bit: 58.1 Len: 49 Query Start:176 Query End:224 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 425 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003098_spr1603_spr1604|hypothetical protein:Aquaporin Z - water channel protein|POSITIVE:NEGATIVE|[1579370,1579848]|479 HSP 1 e-value: 3.0E-12 bit: 74.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 45 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctaacttcctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 2.0E-7 bit: 58.1 Len: 49 Query Start:176 Query End:224 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 425 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_003028_SP_2112_SP_2113|maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[2026318,2026608]|291 HSP 1 e-value: 3.0E-12 bit: 74.0 Len: 41 Query Start:240 Query End:280 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 175 ...............................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat....................... ...............................................................................................................................................................................................................................................cggctagcttcctagtttgcactttgattttcattgagtat....................... HSP 2 e-value: 2.0E-7 bit: 58.1 Len: 49 Query Start:176 Query End:224 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 285 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgta............................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 1.0E-11 bit: 72.0 Len: 48 Query Start:233 Query End:280 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 ........................................................................................................................................................................................................................................cagccttcggctagcttcctagtttgctctttgattttcattgagtat....................... ........................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat....................... HSP 2 e-value: 2.0E-7 bit: 58.1 Len: 49 Query Start:176 Query End:224 Subject Strand: POSITIVE Subject Start: 54 Subject End: 102 ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgta............................................................................... ...............................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta............................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUAUACUCUUCGAAAAUCAAAUUCAAACUACGUCAGCUUCACCUUGCCGUACUCAAGUACAGCCUUCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUUUGAACA (..((((((...((((((((((..(((((((.(..((((...((..((.((((....)))).))....))..))))..))))))))...))))))))))...))))))..).... (-35.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUUCAAAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGAAGGCUGUACUUGAGUACGGCAAGGUGAAGCUGACGUAGUUUGAAUUUGAUUUUCGAAGAGUAUAAG .......((((((..(((((((((((...((((((((..((((.(((....(((((((....)))))))..)))..))))..).)))))))..)))))))))))..))))))... (-48.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 928 90 43 209 162 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 900 90 43 191 144 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 900 90 43 191 144 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 900 90 43 191 144 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 849 90 43 226 179 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 798 107 61 97 51 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 754 108 61 98 51 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 725 60 11 226 177 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 710 109 61 99 51 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 695 109 61 202 154 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 675 108 61 98 51 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 631 109 61 99 51 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 581 49 2 214 165 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 542 39 4 231 196 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 516 45 1 212 162 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 509 50 4 173 123 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 507 50 2 197 150 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 413 45 2 204 155 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 413 69 21 175 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 346 68 21 184 142 smit:SMT_1201|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1163920..1164150_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 900 90 43 76 29 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 900 90 43 76 29 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 900 90 43 76 29 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 841 90 43 73 26 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 841 90 43 52 5 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 820 109 61 92 44 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 757 109 61 88 40 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 754 108 61 58 11 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 752 108 61 53 6 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 732 108 61 55 8 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 732 108 61 77 30 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 707 109 62 92 45 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 701 108 61 57 10 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 696 105 61 88 44 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 695 108 68 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 676 109 63 47 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 656 50 2 145 98 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 635 109 61 92 44 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 476 50 1 80 32 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 414 108 79 30 1 smit:SMT_1767|3end_oxidoreductase,_short_chain_dehydrogenase/reductase_family_1743243..1743393_NEGATIVE