Origin IGS: tacttcactcctatatatttttccactgattttttaatattgtaaagtgtcttctagaacaagcgatgtctgatactctatcatccataaacataatcgttcttgtctcatgattaaatcctgctattttatctttattcacaagaaactttctatggcatctaataagttcttctgtactttcctcttcgattttagctagtgaggttgaagcttcaaaattcccttctgctgttacaaaaagaacagcatgagcttttgtagggtgagttgtaacataataaattttagagagtgatacctttacgatagctctatcttgatataaaatgtagtctttcatatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttttagatgttagagaccctgattttatgataaaataagtagaagatttatatttgtagttaatcttatgtccttgtaaaatttttgtatttttgaatgtttttttaagaaataatattttaaatacagagataaaatatagccaaataaagagtagtgtaaaatttgaattgccttcatagctttcctttcattagaaattagtttatcaaatgaagaaagattaatattattgagatactaaaaagtatctattttatcatgaaatgtctaaattaagaaaatttttaccatttgagatagtatagaaaccatttgagatttttataatttaatttccatcattctgataagattaaactgatagaaggaggctaaatatgaaagactacattttatatcaagatagagctatcgtaaaggtatcactctctaaaatttattatgttacaactcaccctacaaaagctcatgctgttctttttgtaacagcagaagggaattttgaagcttcaacctcactagctaaaatcgaagaggaaagtacagaagaacttattagatgccatagaaagtttcttgtgaataaagataaaatagcaggatttaatcatgagacaagaacgattatgtttatggatgatagagtatcagacatcgcttgttctagaagacactttacaatattaaaaaatcagtggaaaaatatataggagtgaagta Mask Tandem Repeat Region ================================================ tacttcactcctatatatttttccactgattttttaatattgtaaagtgtcttctagaacaagcgatgtctgatactctatcatccataaacataatcgttcttgtctcatgattaaatcctgctattttatctttattcacaagaaactttctatggcatctaataagttcttctgtactttcctcttcgattttagctagtgaggttgaagcttcaaaattcccttctgctgttacaaaaagaacagcatgagcttttgtagggtgagttgtaacataataaattttagagagtgatacctttacgatagctctatcttgatataaaatgtagtctttcatatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Find is-nt database================================================ Query_seq: SMT_1776:SMT_1777|SMT_1776:SMT_1777:K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein:<-->:1752498..1753222 725 tacttcactcctatatatttttccactgattttttaatattgtaaagtgtcttctagaacaagcgatgtctgatactctatcatccataaacataatcgttcttgtctcatgattaaatcctgctattttatctttattcacaagaaactttctatggcatctaataagttcttctgtactttcctcttcgattttagctagtgaggttgaagcttcaaaattcccttctgctgttacaaaaagaacagcatgagcttttgtagggtgagttgtaacataataaattttagagagtgatacctttacgatagctctatcttgatataaaatgtagtctttcatatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1776:SMT_1777|SMT_1776:SMT_1777:K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein:<-->:1752498..1753222 725 tacttcactcctatatatttttccactgattttttaatattgtaaagtgtcttctagaacaagcgatgtctgatactctatcatccataaacataatcgttcttgtctcatgattaaatcctgctattttatctttattcacaagaaactttctatggcatctaataagttcttctgtactttcctcttcgattttagctagtgaggttgaagcttcaaaattcccttctgctgttacaaaaagaacagcatgagcttttgtagggtgagttgtaacataataaattttagagagtgatacctttacgatagctctatcttgatataaaatgtagtctttcatatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1776:SMT_1777|SMT_1776:SMT_1777:K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein:<-->:1752498..1753222 725 tacttcactcctatatatttttccactgattttttaatattgtaaagtgtcttctagaacaagcgatgtctgatactctatcatccataaacataatcgttcttgtctcatgattaaatcctgctattttatctttattcacaagaaactttctatggcatctaataagttcttctgtactttcctcttcgattttagctagtgaggttgaagcttcaaaattcccttctgctgttacaaaaagaacagcatgagcttttgtagggtgagttgtaacataataaattttagagagtgatacctttacgatagctctatcttgatataaaatgtagtctttcatatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 23 Max: 343 Len: 321 Subject: UniRef90_Q9F2F4 Cluster: Regulatory protein; n=6; Streptococcus pneumoniae|Rep: Regulatory protein - Streptococcus pneumoniae HSP 1 e-value: 2.0E-14 bit: 82.0 Len: 321 Query Start:23 Query End:343 Subject Strand: null Subject Start: 1 Subject End: 107 ...................... M K D Y I L Y Q D R A I V K V S L S K I Y Y V T T H P T K A H A V L F V T A E G N F E A S T S L A K I E E E S T E E L I R C H R K F L V N K D K I A G F N H E T R T I M F M D D R V S D I A C S R R H F T I L K N Q W .............................................................................................................................................................................................................................................................................................................................................................................................. ...................... M K H M I I Q T Q K T V Y K V N V D D V Y Y I Q T H P T K A H T V K I V T E E A S F N M V Q N L S N L E N Q Y G E T L M R C H R N C L V N L D K V K S I D F Q E R I L F L G E E G Q Y A V K Y A R R R Y R E I R Q K W .............................................................................................................................................................................................................................................................................................................................................................................................. tacttcactcctatatatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 80 End: 199 ............................................................................... M I H K H N R S C L M I K S C Y F I F I H K K L S M A S N K F F C T F L F D F S .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 126 End: 251 ............................................................................................................................. M L S L F T R N F L W H L I S S S V L S S S I L A S E V E A S K F P S A V T K R T A .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 496 End: 696 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N L S S F D K L I S N E R K A M K A I Q I L H Y S L F G Y I L S L Y L K Y Y F L K K H S K I Q K F Y K D I R L T T N I ............................. Protein_Len: 50 Strand: + Start: 576 End: 725 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M W L Y F I S V F K I L F L K K T F K N T K I L Q G H K I N Y K Y K S S T Y F I I K S G S L T S K K Protein_Len: 39 Strand: - Start: 545 End: 661 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S P L E F K V S S K I Q S Y K I E T N L I N N R L F V N L F V F I K C P C L M ................................................................ Protein_Len: 60 Strand: - Start: 14 End: 343 ............. I L E E T S E E E I K A L S T S A E F N G E A T V F L V A H A K T P H T T V Y Y I K S L S V K V I A R D Q Y L I Y D K M .............................................................................................................................................................................................................................................................................................................................................................................................. tacttcactcctatatatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 302 End: 331 .............................................................................................................................................................................................................................................................................................................CTTTACGATAGCTCTATCTTGATATAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 441 End: 470 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTAATTTAGACATTTCATGATAAAAT............................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 642 End: 671 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGTTAATCTTATGTCCTTGTAAAAT...................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tacttcactcctatatatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1776:SMT_1777|SMT_1776:SMT_1777:K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein:<-->:1752498..1753222 725 tacttcactcctatatatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttcttaaaaaaacattcaaaaatacaaaaattttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Intra-Species Hit: Count: 2 Min: 344 Max: 725 Len: 382 Subject: smit_SMT_1776_SMT_1777|K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein|NEGATIVE:POSITIVE|[1752498,1753222]|725 HSP 1 e-value: 1.0E-153 bit: 543.0 Len: 274 Query Start:344 Query End:617 Subject Strand: POSITIVE Subject Start: 344 Subject End: 617 .......................................................................................................................................................................................................................................................................................................................................................atttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttctt............................................................................................................ .......................................................................................................................................................................................................................................................................................................................................................atttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttctt............................................................................................................ HSP 2 e-value: 3.0E-39 bit: 165.0 Len: 83 Query Start:643 Query End:725 Subject Strand: POSITIVE Subject Start: 643 Subject End: 725 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttacaaggacataagattaactacaaatataaatcttctacttattttatcataaaatcagggtctctaacatctaaaaaa Subject: smit_SMT_729_SMT_730|K07707 two-component system, AgrA family, response regulator AgrA:hypothetical protein|NEGATIVE:NEGATIVE|[635159,636200]|1042 HSP 1 e-value: 1.0E-153 bit: 543.0 Len: 274 Query Start:344 Query End:617 Subject Strand: POSITIVE Subject Start: 592 Subject End: 865 .......................................................................................................................................................................................................................................................................................................................................................atttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttctt............................................................................................................ .......................................................................................................................................................................................................................................................................................................................................................atttagcctccttctatcagtttaatcttatcagaatgatggaaattaaattataaaaatctcaaatggtttctatactatctcaaatggtaaaaattttcttaatttagacatttcatgataaaatagatactttttagtatctcaataatattaatctttcttcatttgataaactaatttctaatgaaaggaaagctatgaaggcaattcaaattttacactactctttatttggctatattttatctctgtatttaaaatattatttctt............................................................................................................ HSP 2 e-value: 8.0E-18 bit: 93.7 Len: 47 Query Start:643 Query End:689 Subject Strand: POSITIVE Subject Start: 891 Subject End: 937 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttacaaggacataagattaactacaaatataaatcttctacttat.................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttacaaggacataagattaactacaaatataaatcttctacttat.................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUAGCCUCCUUCUAUCAGUUUAAUCUUAUCAGAAUGAUGGAAAUUAAAUUAUAAAAAUCUCAAAUGGUUUCUAUACUAUCUCAAAUGGUAAAAAUUUUCUUAAUUUAGACAUUUCAUGAUAAAAUAGAUACUUUUUAGUAUCUCAAUAAUAUUAAUCUUUCUUCAUUUGAUAAACUAAUUUCUAAUGAAAGGAAAGCUAUGAAGGCAAUUCAAAUUUUACACUACUCUUUAUUUGGCUAUAUUUUAUCUCUGUAUUUAAAAUAUUAUUUCUUAAAAAAACAUUCAAAAAUACAAAAAUUUUACAAGGACAUAAGAUUAACUACAAAUAUAAAUCUUCUACUUAUUUUAUCAUAAAAUCAGGGUCUCUAACAUCUAAAAAA .....((((..((((((((.(((.........))).)))))))).((((((((...(((((......)))))...((((((.....))))))..........))))))))..((((.(((((((((((((((((....)))))).........((((((((..(((....((((((....((((....))))....(((((((((((....................)))))))..))))....))))))..(((((((.............................)))))))............)))...))))))))......................))))))))))).))))..))))................. (-49.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUUUAGAUGUUAGAGACCCUGAUUUUAUGAUAAAAUAAGUAGAAGAUUUAUAUUUGUAGUUAAUCUUAUGUCCUUGUAAAAUUUUUGUAUUUUUGAAUGUUUUUUUAAGAAAUAAUAUUUUAAAUACAGAGAUAAAAUAUAGCCAAAUAAAGAGUAGUGUAAAAUUUGAAUUGCCUUCAUAGCUUUCCUUUCAUUAGAAAUUAGUUUAUCAAAUGAAGAAAGAUUAAUAUUAUUGAGAUACUAAAAAGUAUCUAUUUUAUCAUGAAAUGUCUAAAUUAAGAAAAUUUUUACCAUUUGAGAUAGUAUAGAAACCAUUUGAGAUUUUUAUAAUUUAAUUUCCAUCAUUCUGAUAAGAUUAAACUGAUAGAAGGAGGCUAAAU .........((..((.(((...((((.....(((((((((((.....)))))).)))))....))))....)))))..))..((((((((((((..(((((((.(((....))).))))))).))))))))))))......(((((.....(((.(((((...........))))))))........(((((..(((((...((((((((((((((((....(((((((.(((((.(((((..((((..((.(((((.(((((.(.(((((...(((((.....)))))....))))).)))))).))))).))..))))..))))).))))))))))))...))))).)))).))))))).)))))..))))))))))... (-71.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 244 220 177 72 19 smit:SMT_1076|5end_2-amino-4-hydroxy-6-_hydroxymethyldihydropteridine_pyrophosphokinase_/_dihydroneopterin_aldolase_1014813..1015043_NEGATIVE 233 170 130 117 72 smit:SMT_1292|5end_K02050_sulfonate/nitrate/taurine_transport_system_permease_protein_1254179..1254409_POSITIVE 221 366 336 140 111 smit:SMT_919|5end_hypothetical_protein_872499..872729_NEGATIVE 215 254 211 142 104 smit:SMT_861|5end_adenine_phosphoribosyltransferase_805705..805935_NEGATIVE 211 237 197 94 56 smit:SMT_665|5end_NAD+_kinase_576745..576975_NEGATIVE 209 258 217 205 156 smit:SMT_1624|5end_formate_acetyltransferase_1613772..1614002_NEGATIVE 209 43 8 137 102 smit:SMT_1059|5end_NAD(P)H-flavin_oxidoreductase_997379..997609_POSITIVE 208 48 8 142 98 smit:SMT_1087|5end_K01990_ABC-2_type_transport_system_ATP-binding_protein_1024165..1024395_NEGATIVE 206 377 335 134 92 smit:SMT_370|5end_acetyltransferase,_GNAT_family_304688..304918_POSITIVE 205 277 236 187 153 smit:SMT_839|5end_ABC_transporter,_ATP-binding_protein_786065..786295_NEGATIVE 203 34 2 122 83 smit:SMT_1498|5end_transcriptional_regulator,_LytR_family_1481958..1482188_POSITIVE 201 371 335 147 110 smit:SMT_232|5end_DNA_polymerase_III,_alpha_subunit,_Gram-positive_type_168246..168476_POSITIVE 199 236 191 207 167 smit:SMT_1295|5end_transcriptional_regulator_CtsR_1256830..1257060_POSITIVE 197 42 1 217 167 smit:SMT_1543|5end_diphosphomevalonate_decarboxylase_1528024..1528254_NEGATIVE 197 104 61 53 5 smit:SMT_1519|5end_DNA-binding_response_regulator_VncR_1499662..1499892_NEGATIVE 197 142 101 194 153 smit:SMT_479|5end_K03308_neurotransmitter:Na+_symporter,_NSS_family_416656..416886_NEGATIVE 197 226 188 226 181 smit:SMT_242|5end_PTS_system,_mannose-specific_IID_component_180074..180304_NEGATIVE 196 244 204 187 149 smit:SMT_1938|5end_zinc_metalloprotease_ZmpB,_putative_1875374..1875604_POSITIVE 195 373 335 135 98 smit:SMT_1398|5end_dihydroorotase_1373204..1373434_POSITIVE 195 365 337 140 111 smit:SMT_1374|5end_uridylate_kinase_1353020..1353250_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 221 366 336 51 22 smit:SMT_920|3end_serine/threonine_protein_kinase_872588..872738_NEGATIVE 211 237 197 110 72 smit:SMT_666|3end_GTP_pyrophosphokinase-like_protein_576729..576879_NEGATIVE 209 43 8 140 105 smit:SMT_1058|3end_primosomal_protein_DnaI_997462..997612_POSITIVE 203 34 2 114 75 smit:SMT_1497|3end_acetyltransferase,_GNAT_family_1482030..1482180_POSITIVE 202 167 130 151 109 smit:SMT_1291|3end_hypothetical_protein_1254296..1254446_POSITIVE 201 371 335 43 6 smit:SMT_231|3end_translation_elongation_factor_G_168222..168372_POSITIVE 200 209 177 145 113 smit:SMT_1875|3end_hypothetical_protein_1833422..1833572_POSITIVE 200 45 6 44 4 smit:SMT_1511|3end_hypothetical_protein_1493902..1494052_POSITIVE 199 236 191 88 48 smit:SMT_1294|3end_K02049_sulfonate/nitrate/taurine_transport_system_ATP-binding_protein_1256791..1256941_POSITIVE 197 142 101 85 44 smit:SMT_480|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_416765..416915_NEGATIVE 195 373 335 122 85 smit:SMT_1397|3end_mutator_MutT_protein_1373271..1373421_POSITIVE 195 365 337 56 27 smit:SMT_1375|3end_putative_glucose-inhibited_division_protein_1353104..1353254_NEGATIVE 195 195 151 128 88 smit:SMT_1002|3end_aspartyl/glutamyl-tRNA(Asn/Gln)_amidotransferase_subunit_B_945149..945299_POSITIVE 193 207 161 71 27 smit:SMT_828|3end_surface_protein_Rib_751186..751336_NEGATIVE 193 42 1 134 93 smit:SMT_315|3end_acetyl-coenzyme_A_carboxylase_carboxyl_transferase_subunit_beta_256627..256777_POSITIVE 192 253 220 118 81 smit:SMT_754|3end_3-dehydroquinate_synthase_657977..658127_NEGATIVE 192 23 4 54 35 smit:SMT_353|3end_immunity_protein_BlpL_291364..291514_POSITIVE 190 228 187 104 59 smit:SMT_2078|3end_acetyl_xylan_esterase,_putative_1979839..1979989_POSITIVE 189 222 181 94 54 smit:SMT_699|3end_K03106_signal_recognition_particle,_subunit_SRP54_609941..610091_NEGATIVE 188 185 146 125 83 smit:SMT_1960|3end_UDP-galactopyranose_mutase_1894094..1894244_POSITIVE