Origin IGS: atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ataaaaacctttcaacaataaaaattaaacactccgattaaactgactagtaaatagccaacactacaaacagcctgtgccagcaacatatggtgactagaaatgactgtagtaatgtcaccatcttgtcttatgcacttctaaaatttgttatattgattagaagccagagcttataaaaactagctaaactcgagagatagacacaattgcgacgaaaaaatgtataaccaattcaacttgttaaggtaagaaagcattatttccaatctattaattattcatctattacctattatgacacaatattccctatagttcaactttttacttgtttttatattacacggactaaaaagttttcaacagttgattgcatttgttttaataagttttaacctttcttggttagataaaaaaagaaccatacagtttagaatctgtatggtttttgccccacttttgtcccatttttaaatcatgacattgaaaatacctaaaatcacttatatttcaatatttttaattgctctcaatatgaaagtcctttccaaatccctgtagggggcatctaaatcaacaggaaaaagccttgatttacaaggcttttttgcttgtctataactgatttgccccacttttgtcccatttttaaatcatgacattgaaaatacctaaaatcacttatatttcaatatttttaattgctctcaatatgaaagtcctttccaaatccctgtagggggcatctaaatacaacaggaaaaagccttgatttacaaggcttttttgtgtatctgttctacttttggtcaactaatggatatcaacggtataattttatgaacacccttcccagacagctctaatctgattgcactcaaaattttttaaaatttaaaacaaaagacttgcttttcttttaatttatgttataattgttcttgtatctgatacaagtttattaagagagggattcat Mask Tandem Repeat Region ================================================ atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Find is-nt database================================================ Query_seq: SMT_1770:SMT_1771|SMT_1770:SMT_1771:hypothetical protein:unknown, predicted membrane protein (TMS5):<-->:1746596..1747576 981 atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1770:SMT_1771|SMT_1770:SMT_1771:hypothetical protein:unknown, predicted membrane protein (TMS5):<-->:1746596..1747576 981 atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1770:SMT_1771|SMT_1770:SMT_1771:hypothetical protein:unknown, predicted membrane protein (TMS5):<-->:1746596..1747576 981 atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 166 End: 294 ..................................................................................................................................................................... M T K S R T D T Q K S L V N Q G F F L L Y L D A P Y R D L E R T F I L R A I K N I E I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 294 End: 407 ..................................................................................................................................................................................................................................................................................................... M S D F R Y F Q C H D L K M G Q K W G K S V I D K Q K S L V N Q G F F L L I .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 43 Strand: + Start: 344 End: 472 ....................................................................................................................................................................................................................................................................................................................................................... M G Q I S Y R Q A K K P C K S R L F P V D L D A P Y R D L E R T F I L R A I K N I E I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 472 End: 570 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S D F R Y F Q C H D L K M G Q K W G K N H T D S K L Y G S F F I ........................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 701 End: 796 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I N R L E I M L S Y L N K L N W L Y I F S S Q L C L S L E F S ......................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 747 End: 848 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G Y T F F R R N C V Y L S S L A S F Y K L W L L I N I T N F R S A ..................................................................................................................................... Protein_Len: 40 Strand: + Start: 848 End: 967 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R Q D G D I T T V I S S H H M L L A Q A V C S V G Y L L V S L I G V F N F Y C .............. Protein_Len: 41 Strand: - Start: 806 End: 928 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L S Q S R I L I V F K L L A Y S L I T V N S C D N R T V M H Q Q C L S N T T N A M ..................................................... Protein_Len: 54 Strand: - Start: 587 End: 748 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F K N F C I C D V T S F K K T R T I Y F C T F L Q V I P F I T D Y Y T I S S Y N I S Q F Y H K R V K V L Q M ......................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 508 End: 642 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F H S L L P A F V M C I R F Q I T R K K D L W S L N F S I L V F A I L Q Q F S K L G H L M ................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 139 End: 228 .......................................................................................................................................... L I I G N I D M L Q G F T S C I C L F A K Y I L A K E Q Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 658 End: 687 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTATAGGGAATATTGTGTCATAAT...................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 43 End: 72 ..........................................ACTTGCTTTTCTTTTAATTTATGTTATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -8.1 Tail_Score: -4.15044 Start: 22 End: 38 Full_Region: tatgttataattgtt cttgtat ctg atacaag tttattaagagaggg .....................cttgtatctgatacaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 64 HP_score: -4.8 Tail_Score: -4.30911 Start: 56 End: 84 Full_Region: aaaattttttaaaat ttaaaacaaaag acttg cttttcttttaa tttatgttataattg .......................................................ttaaaacaaaagacttgcttttcttttaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 52 HP_score: -4.8 Tail_Score: -3.07685 Start: 56 End: 84 Full_Region: CAATTATAACATAAA TTAAAAGAAAAG CAAGT CTTTTGTTTTAA ATTTTAAAAAATTTT .......................................................TTAAAAGAAAAGCAAGTCTTTTGTTTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 72 HP_score: -8.3 Tail_Score: -3.26814 Start: 186 End: 224 Full_Region: ggggcatctaaatac aacaggaaaaagccttg attta caaggcttttttgtgta tctgttctacttttg .........................................................................................................................................................................................aacaggaaaaagccttgatttacaaggcttttttgtgta..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 85 HP_score: -10.9 Tail_Score: -3.17876 Start: 188 End: 222 Full_Region: ggcatctaaatacaa caggaaaaagccttg attta caaggcttttttgtg tatctgttctacttt ...........................................................................................................................................................................................caggaaaaagccttgatttacaaggcttttttgtg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -8.7 Tail_Score: -3.84185 Start: 188 End: 222 Full_Region: AAAGTAGAACAGATA CACAAAAAAGCCTTG TAAAT CAAGGCTTTTTCCTG TTGTATTTAGATGCC ...........................................................................................................................................................................................CACAAAAAAGCCTTGTAAATCAAGGCTTTTTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -9.0 Tail_Score: -2.69459 Start: 191 End: 219 Full_Region: GTAGAACAGATACAC AAAAAAGCCTTG TAAAT CAAGGCTTTTTC CTGTTGTATTTAGAT ..............................................................................................................................................................................................AAAAAAGCCTTGTAAATCAAGGCTTTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 88 HP_score: -8.0 Tail_Score: -4.9181 Start: 197 End: 213 Full_Region: CAGATACACAAAAAA GCCTTG TAAAT CAAGGC TTTTTCCTGTTGTAT ....................................................................................................................................................................................................GCCTTGTAAATCAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 95 HP_score: -8.0 Tail_Score: -5.4492 Start: 197 End: 213 Full_Region: atacaacaggaaaaa gccttg attta caaggc ttttttgtgtatctg ....................................................................................................................................................................................................gccttgatttacaaggc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 70 HP_score: -9.0 Tail_Score: -2.60283 Start: 370 End: 398 Full_Region: CAGTTATAGACAAGC AAAAAAGCCTTG TAAAT CAAGGCTTTTTC CTGTTGATTTAGATG .................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGCCTTGTAAATCAAGGCTTTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -8.0 Tail_Score: -5.35354 Start: 376 End: 392 Full_Region: aatcaacaggaaaaa gccttg attta caaggc ttttttgcttgtcta .......................................................................................................................................................................................................................................................................................................................................................................................gccttgatttacaaggc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 88 HP_score: -8.0 Tail_Score: -4.90136 Start: 376 End: 392 Full_Region: TAGACAAGCAAAAAA GCCTTG TAAAT CAAGGC TTTTTCCTGTTGATT .......................................................................................................................................................................................................................................................................................................................................................................................GCCTTGTAAATCAAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 95 HP_score: -6.5 Tail_Score: -5.71712 Start: 531 End: 560 Full_Region: ACAAAAGTGGGGCAA AAACCATACAGAT TCTA AACTGTATGGTTC TTTTTTTATCTAACC ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATACAGATTCTAAACTGTATGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 90 HP_score: -8.2 Tail_Score: -4.92669 Start: 534 End: 557 Full_Region: AAAGTGGGGCAAAAA CCATACAGAT TCTA AACTGTATGG TTCTTTTTTTATCTA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACAGATTCTAAACTGTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 85 HP_score: -8.2 Tail_Score: -4.58685 Start: 534 End: 557 Full_Region: tagataaaaaaagaa ccatacagtt taga atctgtatgg tttttgccccacttt .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccatacagtttagaatctgtatgg........................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 43 HP_score: -3.0 Tail_Score: -2.84229 Start: 922 End: 938 Full_Region: GGCTGTTTGTAGTGT TGGCTA TTTAC TAGTCA GTTTAATCGGAGTGT .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTATTTACTAGTCA........................................... Find igs database================================================ Query_seq: SMT_1770:SMT_1771|SMT_1770:SMT_1771:hypothetical protein:unknown, predicted membrane protein (TMS5):<-->:1746596..1747576 981 atgaatccctctcttaataaacttgtatcagatacaagaacaattataacataaattaaaagaaaagcaagtcttttgttttaaattttaaaaaattttgagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Intra-Species Hit: Count: 2 Min: 1 Max: 981 Len: 981 Subject: smit_SMT_1770_SMT_1771|hypothetical protein:unknown, predicted membrane protein (TMS5)|NEGATIVE:POSITIVE|[1746596,1747576]|981 HSP 1 e-value: 0.0 bit: 1707.0 Len: 882 Query Start:100 Query End:981 Subject Strand: POSITIVE Subject Start: 100 Subject End: 981 ...................................................................................................gagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttcnnnnnnnatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat ...................................................................................................gagtgcaatcagattagagctgtctgggaagggtgttcataaaattataccgttgatatccattagttgaccaaaagtagaacagatacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaatcagttatagacaagcaaaaaagccttgtaaatcaaggctttttcctgttgatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat HSP 2 e-value: 5.0E-20 bit: 101.0 Len: 51 Query Start:1 Query End:51 Subject Strand: POSITIVE Subject Start: 1 Subject End: 51 atgaatccctctcttaataaacttgtatcagatacaagaacaattataaca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. atgaatccctctcttaataaacttgtatcagatacaagaacaattataaca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: smit_SMT_2105_SMT_2106|hypothetical protein predicted by Glimmer/Critica:unknown, predicted membrane protein (TMS5)|POSITIVE:POSITIVE|[1997045,1997302]|258 HSP 1 e-value: 6.0E-84 bit: 313.0 Len: 212 Query Start:770 Query End:981 Subject Strand: POSITIVE Subject Start: 52 Subject End: 258 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caattgtgtctatctctcgagtt-agctagtttt-ataagctctggct-ctaatcaatata-caatttagaraagtgcataagacaagatggtgacat-actacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat Inter-species Hit: Count: 5 Min: 186 Max: 981 Len: 796 Subject: NC_009009_SSA_0230_SSA_0231|hypothetical protein:Conserved uncharacterized protein|NEGATIVE:POSITIVE|[225048,225852]|805 HSP 1 e-value: 0.0 bit: 1144.0 Len: 613 Query Start:369 Query End:981 Subject Strand: POSITIVE Subject Start: 192 Subject End: 805 ................................................................................................................................................................................................................................................................................................................................................................................caaaaaagccttgtaaatcaaggctttttcctgttg-atttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttcnnnnnnnatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggcttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat ................................................................................................................................................................................................................................................................................................................................................................................caaaaaagcctagtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaaaaccatacagattctaaactgtatggttctttttttatctaaccaagaaaggttaaaacttattaaaacaaatgcaatcaactgttgaaaactttttagtccgtgtaatataaaaacaagtaaaaagttgaactatagggaatattgtgtcataataggtaatagatgaataattaatagattggaaataatgctttcttaccttaacaagttgaattggttatacattttttcgtcgcaattgtgtctatctctcgagtttagctagtttttataagctctggtttctaatcaatataacaaattttagaagtgcataagacaagatggtgacattactacagtcatttctagtcaccatatgttgctggcacaggctgtttgtagtgttggctatttactagtcagtttaatcggagtgtttaatttttattgttgaaaggtttttat HSP 2 e-value: 2.0E-87 bit: 325.0 Len: 168 Query Start:186 Query End:353 Subject Strand: POSITIVE Subject Start: 188 Subject End: 355 .........................................................................................................................................................................................tacacaaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................tacacaaaaaagcctagtaaatcaaggctttttcctgttgtatttagatgccccctacagggatttggaaaggactttcatattgagagcaattaaaaatattgaaatataagtgattttaggtattttcaatgtcatgatttaaaaatgggacaaaagtggggcaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_008532_STER_1914_STER_1915|Adenylate kinase or related kinase:permease of the major facilitator superfamily|NEGATIVE:NEGATIVE|[1775825,1776113]|289 HSP 1 e-value: 3.0E-18 bit: 95.6 Len: 56 Query Start:191 Query End:246 Subject Strand: POSITIVE Subject Start: 92 Subject End: 146 ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttt-cctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-13 bit: 79.8 Len: 55 Query Start:370 Query End:424 Subject Strand: POSITIVE Subject Start: 92 Subject End: 146 .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttg-atttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggc-ttttcctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_006449_str1941_str1943|topology modulation protein:multidrug-efflux transporter, putative|NEGATIVE:NEGATIVE|[1718179,1718467]|289 HSP 1 e-value: 3.0E-18 bit: 95.6 Len: 56 Query Start:191 Query End:246 Subject Strand: POSITIVE Subject Start: 92 Subject End: 146 ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttt-cctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-13 bit: 79.8 Len: 55 Query Start:370 Query End:424 Subject Strand: POSITIVE Subject Start: 92 Subject End: 146 .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttg-atttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggc-ttttcctgttgtatttagatgccccctacagg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_006448_stu1941_stu1942|topology modulation protein:hypothetical protein|NEGATIVE:POSITIVE|[1717553,1717891]|339 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 54 Query Start:191 Query End:244 Subject Strand: POSITIVE Subject Start: 92 Subject End: 144 ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttgtatttagatgccccctaca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttt-cctgttgtatttagatgccccctaca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-12 bit: 75.8 Len: 53 Query Start:370 Query End:422 Subject Strand: POSITIVE Subject Start: 92 Subject End: 144 .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggctttttcctgttg-atttagatgccccctaca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................aaaaaagccttgtaaatcaaggc-ttttcctgttgtatttagatgccccctaca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1794_SP_1795|hypothetical protein:sucrose-6-phosphate hydrolase, putative|NEGATIVE:NEGATIVE|[1709987,1710371]|385 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 36 Query Start:215 Query End:250 Subject Strand: NEGATIVE Subject Start: 162 Subject End: 197 ......................................................................................................................................................................................................................ttttcctgttgtatttagatgccccctacagggatt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................ttttcctgttgtatttagatgccccctacagggatt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 35 Query Start:394 Query End:428 Subject Strand: NEGATIVE Subject Start: 162 Subject End: 197 .........................................................................................................................................................................................................................................................................................................................................................................................................ttttcctgttg-atttagatgccccctacagggatt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................ttttcctgttgtatttagatgccccctacagggatt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACACAAAAAAGCCUUGUAAAUCAAGGCUUUUUCCUGUUGUAUUUAGAUGCCCCCUACAGGGAUUUGGAAAGGACUUUCAUAUUGAGAGCAAUUAAAAAUAUUGAAAUAUAAGUGAUUUUAGGUAUUUUCAAUGUCAUGAUUUAAAAAUGGGACAAAAGUGGGGCAAAUCAGUUAUAGACAAGCAAAAAAGCCUUGUAAAUCAAGGCUUUUUCCUGUUGAUUUAGAUGCCCCCUACAGGGAUUUGGAAAGGACUUUCAUAUUGAGAGCAAUUAAAAAUAUUGAAAUAUAAGUGAUUUUAGGUAUUUUCAAUGUCAUGAUUUAAAAAUGGGACAAAAGUGGGGCAAAAACCAUACAGAUUCUAAACUGUAUGGUUCUUUUUUUAUCUAACCAAGAAAGGUUAAAACUUAUUAAAACAAAUGCAAUCAACUGUUGAAAACUUUUUAGUCCGUGUAAUAUAAAAACAAGUAAAAAGUUGAACUAUAGGGAAUAUUGUGUCAUAAUAGGUAAUAGAUGAAUAAUUAAUAGAUUGGAAAUAAUGCUUUCUUACCUUAACAAGUUGAAUUGGUUAUACAUUUUUUCGUCGCAAUUGUGUCUAUCUCUCGAGUUUAGCUAGUUUUUAUAAGCUCUGGCUUCUAAUCAAUAUAACAAAUUUUAGAAGUGCAUAAGACAAGAUGGUGACAUUACUACAGUCAUUUCUAGUCACCAUAUGUUGCUGGCACAGGCUGUUUGUAGUGUUGGCUAUUUACUAGUCAGUUUAAUCGGAGUGUUUAAUUUUUAUUGUUGAAAGGUUUUUAU .(((..(((((((((((.....)))))))))))..)))(((((((...((((((((...........(((((..(((((.(((((((((...((((((.((((........)))).))))))...))))))))).......................((.((((((..((.....((((..(((((((((((((((.....)))))))))))..))))..))))))))))))))...........)))))..))))).(((((((((...((((((.((((........)))).))))))...))))))))).......................)).))))))..((((((((((........))))))))))...........(((((......)))))..............))))))).(((((...((((((.....((.((((..(((.......((.((((((.(((..(((((((((.(...(((((((......((....(((((.(((((((((.(((((((((......)))))..........))))..))))))))).)))))..))...(((((..(((((.......(((((((...........)))))))..((((((((...............)))))))).....)))))..((((((((...................))))))))..))))).)))))))..).)))))))).)..))).)))))).))....)))..)))).)).....))))))..)))))........... (-192.37) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAAAAACCUUUCAACAAUAAAAAUUAAACACUCCGAUUAAACUGACUAGUAAAUAGCCAACACUACAAACAGCCUGUGCCAGCAACAUAUGGUGACUAGAAAUGACUGUAGUAAUGUCACCAUCUUGUCUUAUGCACUUCUAAAAUUUGUUAUAUUGAUUAGAAGCCAGAGCUUAUAAAAACUAGCUAAACUCGAGAGAUAGACACAAUUGCGACGAAAAAAUGUAUAACCAAUUCAACUUGUUAAGGUAAGAAAGCAUUAUUUCCAAUCUAUUAAUUAUUCAUCUAUUACCUAUUAUGACACAAUAUUCCCUAUAGUUCAACUUUUUACUUGUUUUUAUAUUACACGGACUAAAAAGUUUUCAACAGUUGAUUGCAUUUGUUUUAAUAAGUUUUAACCUUUCUUGGUUAGAUAAAAAAAGAACCAUACAGUUUAGAAUCUGUAUGGUUUUUGCCCCACUUUUGUCCCAUUUUUAAAUCAUGACAUUGAAAAUACCUAAAAUCACUUAUAUUUCAAUAUUUUUAAUUGCUCUCAAUAUGAAAGUCCUUUCCAAAUCCCUGUAGGGGGCAUCUAAAUCAACAGGAAAAAGCCUUGAUUUACAAGGCUUUUUUGCUUGUCUAUAACUGAUUUGCCCCACUUUUGUCCCAUUUUUAAAUCAUGACAUUGAAAAUACCUAAAAUCACUUAUAUUUCAAUAUUUUUAAUUGCUCUCAAUAUGAAAGUCCUUUCCAAAUCCCUGUAGGGGGCAUCUAAAUACAACAGGAAAAAGCCUUGAUUUACAAGGCUUUUUUGUGUA ...............................((((((.......(.(((((...(((......))).....((((((.((..((((((.((((((((...................))))))))..)))....)))...(((((...............))))).))))).))).......)))))).....))).))).((((..((((((.(((((((((((((.....((((.(((((.(((.((((((((((......))))......................))))))...........................((((((((((((((.........))).))..)))))))))...))))))))))))...........((((((..(((((......)))))(((((((.(((((((((((((........))))))))))))).......)))))))..((((((((.((((((..((((((((........................(((((((((((....)))).)))))))...................((((((....((((((((((.((((((((((.....))))))))))...))))).......)))))))))))...........)))))))).))))))..))))))))..........))))))......))))))))..))).)).)))).))...(((((((.((......)).))))))).))))......(((.((((((((((((.....)))))))))))).))). (-156.82) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 335 740 698 118 55 smit:SMT_489|5end_K01999_branched-chain_amino_acid_transport_system_substrate-binding_protein_423669..423899_POSITIVE 323 240 191 57 7 smit:SMT_818|5end_cystathionine_gamma-synthase_729801..730031_NEGATIVE 313 642 602 192 148 smit:SMT_1158|5end_DNA_gyrase_subunit_B_1103957..1104187_NEGATIVE 299 719 675 192 148 smit:SMT_1006|5end_6-pyruvoyl_tetrahydrobiopterin_synthase,_putative_946599..946829_POSITIVE 294 748 701 227 176 smit:SMT_563|5end_thioredoxin_reductase_480988..481218_POSITIVE 292 766 722 58 8 smit:SMT_347|5end_hypothetical_protein_286210..286440_NEGATIVE 288 247 201 211 167 smit:SMT_2044|5end_transcriptional_activator_TipA,_putative_1955885..1956115_NEGATIVE 288 247 201 196 152 smit:SMT_2016|5end_tyrosine_recombinase_1933425..1933655_NEGATIVE 288 247 201 169 125 smit:SMT_2008|5end_K07485_transposase_1928662..1928892_NEGATIVE 288 247 201 211 167 smit:SMT_2006|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1926472..1926702_POSITIVE 288 247 201 187 143 smit:SMT_2001|5end_membrane_protease_protein_family_1923387..1923617_POSITIVE 288 247 201 132 88 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 288 247 201 132 88 smit:SMT_1961|5end_K07485_transposase_1894206..1894436_POSITIVE 288 247 201 132 88 smit:SMT_1955|5end_carbamoyl-phosphate_synthase_small_chain_1889408..1889638_NEGATIVE 288 247 201 176 132 smit:SMT_1954|5end_6-phospho-beta-glucosidase_1888548..1888778_POSITIVE 288 247 201 167 123 smit:SMT_1944|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1879494..1879724_NEGATIVE 288 68 21 172 133 smit:SMT_1794|5end_SOS_responce_UmuC_protein_1769074..1769304_NEGATIVE 288 247 201 132 88 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 288 247 201 208 164 smit:SMT_1686|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1670175..1670405_POSITIVE 288 247 201 181 137 smit:SMT_1155|5end_ABC-type_oligopeptide_transport_system,_periplasmic_component_1099665..1099895_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 293 740 691 143 91 smit:SMT_397|3end_NAD(+)_synthetase_327423..327573_POSITIVE 288 68 21 61 22 smit:SMT_1795|3end_DNA_polymerase_III,_delta_subunit_1769185..1769335_NEGATIVE 282 57 11 140 93 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 280 756 717 100 52 smit:SMT_1106|3end_ribonuclease_P_protein_component_1047601..1047751_NEGATIVE 277 750 703 67 15 smit:SMT_173|3end_50S_ribosomal_protein_L2_117407..117557_POSITIVE 275 740 695 53 4 smit:SMT_1956|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1889537..1889687_NEGATIVE 275 240 191 69 29 smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE 274 739 699 52 23 smit:SMT_172|3end_50S_ribosomal_protein_L23_116556..116706_POSITIVE 272 42 6 84 48 smit:SMT_728|3end_hypothetical_protein_633203..633353_NEGATIVE 271 740 713 48 20 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 271 740 713 49 21 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 271 740 713 48 20 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 271 720 680 69 32 smit:SMT_717|3end_Mn2+_and_Fe2+_transporter_of_the_NRAMP_family_622815..622965_NEGATIVE 268 740 699 48 7 smit:SMT_387|3end_hypothetical_protein_predicted_by_Glimmer/Critica_321118..321268_POSITIVE 267 639 593 121 60 smit:SMT_1331|3end_hypothetical_protein_1306045..1306195_NEGATIVE 267 60 11 112 63 smit:SMT_833|3end_hypothetical_protein_predicted_by_Glimmer/Critica_775183..775333_NEGATIVE 264 728 688 140 92 smit:SMT_1737|3end_peptidyl-prolyl_cis-trans_isomerase_1720598..1720748_POSITIVE 263 745 711 106 74 smit:SMT_1300|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1262614..1262764_NEGATIVE 261 239 193 68 19 smit:SMT_1532|3end_hypothetical_protein_1515994..1516144_NEGATIVE 261 635 598 56 10 smit:SMT_1243|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1204469..1204619_POSITIVE