Origin IGS: tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaaaaaagtcataggcaattagaattattatttgaacataaacgttagtttcatcgttctgaactagcagagttattaaattgtacagaacgtgtagtcaaagatgatctatcccatgttaaatctgcttttcctgacttgatttttcattcttcgactaatggtatacgcattattaataccgatgatagtgatattgaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttcaatatcactatcatcggtattaataatgcgtataccattagtcgaagaatgaaaaatcaagtcaggaaaagcagatttaacatgggatagatcatctttgactacacgttctgtacaatttaataactctgctagttcagaacgatgaaactaacgtttatgttcaaataataattctaattgcctatgacttttttagataataaatctctcatgaatgtctttctctttttataaattatcggatttcacctcttgcaattataccacaaagaataggtatagcatgatataacgacttttactaaaatcctttatttcgtataataacactacggaggcaatatataaacaattttcttattttaccgtctattgagggcgtgaatacaggatcaaattcaagtcgaaagattatatttttatttttaaaaatttatataatagcaacaatcaaagaatttgatttttttatattaaaattatataataaccaaaataattgatttttttatattaaaattatataatagcgataatcaaagtaattgatttattttttaatattaaaatagaaaaggagggtaagcaata Mask Tandem Repeat Region ================================================ tattgcttaccctccttttctattttaatattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaaaaaagtcataggcaattagaattattatttgaacataaacgttagtttcatcgttctgaactagcagagttattaaattgtacagaacgtgtagtcaaagatgatctatcccatgttaaatctgcttttcctgacttgatttttcattcttcgactaatggtatacgcattattaataccgatgatagtgatattgaa Find is-nt database================================================ Query_seq: SMT_1760:SMT_1761|SMT_1760:SMT_1761:hypothetical protein predicted by Glimmer/Critica:transcriptional activator, putative:<-->:1736001..1736597 597 tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaaaaaagtcataggcaattagaattattatttgaacataaacgttagtttcatcgttctgaactagcagagttattaaattgtacagaacgtgtagtcaaagatgatctatcccatgttaaatctgcttttcctgacttgatttttcattcttcgactaatggtatacgcattattaataccgatgatagtgatattgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1760:SMT_1761|SMT_1760:SMT_1761:hypothetical protein predicted by Glimmer/Critica:transcriptional activator, putative:<-->:1736001..1736597 597 tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaaaaaagtcataggcaattagaattattatttgaacataaacgttagtttcatcgttctgaactagcagagttattaaattgtacagaacgtgtagtcaaagatgatctatcccatgttaaatctgcttttcctgacttgatttttcattcttcgactaatggtatacgcattattaataccgatgatagtgatattgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1760:SMT_1761|SMT_1760:SMT_1761:hypothetical protein predicted by Glimmer/Critica:transcriptional activator, putative:<-->:1736001..1736597 597 tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaaaaaagtcataggcaattagaattattatttgaacataaacgttagtttcatcgttctgaactagcagagttattaaattgtacagaacgtgtagtcaaagatgatctatcccatgttaaatctgcttttcctgacttgatttttcattcttcgactaatggtatacgcattattaataccgatgatagtgatattgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 400 Max: 597 Len: 198 Subject: UniRef90_Q97P44 Cluster: Hypothetical trans-acting regulator SP_1800; n=6; Streptococcus pneumoniae|Rep: Hypothetical trans-acting regulator SP_1800 - Streptococcus pneumoniae HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 198 Query Start:400 Query End:597 Subject Strand: null Subject Start: 8 Subject End: 76 ............................................................................................................................................................................................................................................................................................................................................................................................................... K S H R Q L E L L - - - F E H K R * F H R S E L A E L L N C T E R V V K D D L S H V K S A F P D L I F H S S T N G I R I I N T D D S D I E ............................................................................................................................................................................................................................................................................................................................................................................................................... K S H R Q L E L L E L L F E H K R W F H R S E L A E L L N C T E R A V K D D L S H V K S A F P D L I F H S S T N G I R I I N T D D S D I E Subject: UniRef90_A3CQR4 Cluster: M protein trans-acting positive transcriptional regulator (MGA), putative; n=1; Streptococcus sanguinis SK36|Rep: M protein trans-acting positive transcriptional regulator (MGA), putative - Streptococcus sanguinis (strain SK36) HSP 1 e-value: 2.0E-24 bit: 114.0 Len: 198 Query Start:400 Query End:597 Subject Strand: null Subject Start: 8 Subject End: 76 ............................................................................................................................................................................................................................................................................................................................................................................................................... K S H R Q L E L L - - - F E H K R * F H R S E L A E L L N C T E R V V K D D L S H V K S A F P D L I F H S S T N G I R I I N T D D S D I E ............................................................................................................................................................................................................................................................................................................................................................................................................... K S H R Q L E L L E L L F K N K R W F H I S E L A E L L N C T E R S V K D D L S H V K S A F P Q L I F H S S T N G I R I I N T D D S D I E Subject: UniRef90_Q8DP24 Cluster: Hypothetical protein spr1404; n=2; Streptococcus pneumoniae|Rep: Hypothetical protein spr1404 - Streptococcus pneumoniae (strain ATCC BAA-255 / R6) HSP 1 e-value: 8.0E-6 bit: 52.8 Len: 186 Query Start:409 Query End:594 Subject Strand: null Subject Start: 22 Subject End: 86 ........................................................................................................................................................................................................................................................................................................................................................................................................................ R Q L E L L F E H K R * F H R S E L A E L L N C T E R V V K D D L S H V K S A F P D L I F H S S T N G I R I - - - I N T D D S D I ... ........................................................................................................................................................................................................................................................................................................................................................................................................................ R L M E T L I Q N R N W M K L H E L A E K L G C T E R I L K S D L N E L R I A F P S I N I Q S S V N G I M I D L E V N T S V E D I ... tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 159 End: 287 .............................................................................................................................................................. M F K N K N I I F R L E F D P V F T P S I D G K I R K L F I Y C L R S V I I R N K G F ...................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 450 End: 539 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R E S S A S N N F Q V S R T T L S S R D W T L D A K G S K M .......................................................... Protein_Len: 30 Strand: - Start: 395 End: 484 .......................................................................................................................................................................................................................................................................................................................................................................................................... R F F D Y A I L I I I Q V Y V N T E D N Q V L L T I L N Y M ................................................................................................................. Protein_Len: 60 Strand: - Start: 92 End: 271 ........................................................................................... N N Q N N Y L K L I F F D F E K I T A I I Y I K L F L F I I K R S S N S G T N V G E I S P L I L F N N I Y Q R R L T I M ...................................................................................................................................................................................................................................................................................................................................... tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 242 End: 271 .................................................................................................................................................................................................................................................GTTTATATATTGCCTCCGTAGTGTTATTAT...................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 64 End: 93 ...............................................................ATTGATTTTTTTATATTAAAATTATATAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 104 End: 133 .......................................................................................................TTTGATTTTTTTATATTAAAATTATATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 267 End: 296 ..........................................................................................................................................................................................................................................................................CTTTTACTAAAATCCTTTATTTCGTATAAT............................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 84 HP_score: -4.9 Tail_Score: -5.80817 Start: 129 End: 141 Full_Region: atataatagcaacaa tcaaa gaa tttga tttttttatattaaa ................................................................................................................................tcaaagaatttga........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_1760:SMT_1761|SMT_1760:SMT_1761:hypothetical protein predicted by Glimmer/Critica:transcriptional activator, putative:<-->:1736001..1736597 597 tattgcttaccctccttttctattttaatattaaaaaataaatcaattactttgattatcgctattatataattttaatataaaaaaatcaattattttggttattatataattttaatataaaaaaatcaaattctttgattgttgctattatataaatttttaaaaataaaaatataatctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 182 Max: 399 Len: 218 Subject: smit_SMT_1760_SMT_1761|hypothetical protein predicted by Glimmer/Critica:transcriptional activator, putative|NEGATIVE:POSITIVE|[1736001,1736597]|597 HSP 1 e-value: 1.0E-120 bit: 432.0 Len: 218 Query Start:182 Query End:399 Subject Strand: POSITIVE Subject Start: 182 Subject End: 399 .....................................................................................................................................................................................ctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaa...................................................................................................................................................................................................... .....................................................................................................................................................................................ctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattcatgagagatttattatctaa...................................................................................................................................................................................................... Inter-species Hit: Count: 3 Min: 182 Max: 379 Len: 198 Subject: NC_008533_SPD_1587_SPD_1588|transcriptional activator, putative:hypothetical protein|NEGATIVE:POSITIVE|[1605802,1606490]|689 HSP 1 e-value: 2.0E-86 bit: 321.0 Len: 198 Query Start:182 Query End:379 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 198 .....................................................................................................................................................................................ctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattc.......................................................................................................................................................................................................................... .....................................................................................................................................................................................ctttagacttgaatttgattctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgtctccgtagtgttattatacgaaataaaagattttaggaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtttaatccgataatttataaagagagaaagatattc.......................................................................................................................................................................................................................... Subject: NC_003028_SP_1800_SP_1801|transcriptional activator, putative:hypothetical protein|NEGATIVE:POSITIVE|[1718160,1718601]|442 HSP 1 e-value: 2.0E-86 bit: 321.0 Len: 198 Query Start:182 Query End:379 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 198 .....................................................................................................................................................................................ctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtgaaatccgataatttataaaaagagaaagacattc.......................................................................................................................................................................................................................... .....................................................................................................................................................................................ctttagacttgaatttgattctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgtctccgtagtgttattatacgaaataaaagattttaggaaaagtcgttatatcatgctatacctattctttgtggtataattgcaagaggtttaatccgataatttataaagagagaaagatattc.......................................................................................................................................................................................................................... Subject: NC_003098_spr1622_spr1623|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1598328,1598953]|626 HSP 1 e-value: 5.0E-62 bit: 240.0 Len: 141 Query Start:182 Query End:322 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 141 .....................................................................................................................................................................................ctttcgacttgaatttgatcctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgcctccgtagtgttattatacgaaataaaggattttagtaaaagtcgttatatcatgctatacctattct................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................ctttagacttgaatttgattctgtattcacgccctcaatagacggtaaaataagaaaattgtttatatattgtctccgtagtgttattatacgaaataaaagattttaggaaaagtcgttatatcatgctatacctattct................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUCGACUUGAAUUUGAUCCUGUAUUCACGCCCUCAAUAGACGGUAAAAUAAGAAAAUUGUUUAUAUAUUGCCUCCGUAGUGUUAUUAUACGAAAUAAAGGAUUUUAGUAAAAGUCGUUAUAUCAUGCUAUACCUAUUCUUUGUGGUAUAAUUGCAAGAGGUGAAAUCCGAUAAUUUAUAAAAAGAGAAAGACAUUC (((((..((((....(((........))).(((.((....)).)))....)))).((((((((...((.(..((((.....(((.(((((((...(((((((((..(((((...............))))).....))))))))).))))))).))).))))..).))..)))))))).........)))))...... (-36.46) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAUGUCUUUCUCUUUUUAUAAAUUAUCGGAUUUCACCUCUUGCAAUUAUACCACAAAGAAUAGGUAUAGCAUGAUAUAACGACUUUUACUAAAAUCCUUUAUUUCGUAUAAUAACACUACGGAGGCAAUAUAUAAACAAUUUUCUUAUUUUACCGUCUAUUGAGGGCGUGAAUACAGGAUCAAAUUCAAGUCGAAAG ..(((((.....................((......))...(((...((((((..........))))))))).)))))..((((((........(((((...(((((((.........))))))).....................(((((..((.((....)).))...))))).))))).......)))))).... (-29.86) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 304 160 114 93 38 smit:SMT_1861|5end_sucrose_operon_repressor_(SCR_operon_regulatory_protein)_1823713..1823943_POSITIVE 300 178 134 198 156 smit:SMT_1859|5end_serine_protease_1822394..1822624_NEGATIVE 294 45 1 117 74 smit:SMT_2023|5end_tryptophan_synthase,_alpha_subunit_1939315..1939545_POSITIVE 273 45 6 117 78 smit:SMT_1818|5end_tryptophan_synthase,_alpha_subunit_1792190..1792420_POSITIVE 269 120 73 128 69 smit:SMT_285|5end_polysaccharide_polymerase_227866..228096_POSITIVE 260 44 5 230 188 smit:SMT_1116|5end_K02244_competence_protein_ComGB_1053841..1054071_NEGATIVE 257 136 97 223 185 smit:SMT_816|5end_SWF/SNF_family_helicase_727440..727670_NEGATIVE 257 69 29 94 55 smit:SMT_342|5end_chaperone_protein_DnaJ_281800..282030_POSITIVE 255 47 5 47 4 smit:SMT_969|5end_30S_ribosomal_protein_S15_914922..915152_NEGATIVE 244 150 108 91 52 smit:SMT_853|5end_ATP-dependent_endopeptidase_clp_ATP-binding_subunit_ClpX_799285..799515_NEGATIVE 242 79 31 103 53 smit:SMT_154|5end_K03647_protein_involved_in_ribonucleotide_reduction_101930..102160_POSITIVE 234 143 101 195 152 smit:SMT_405|5end_zinc_metalloprotease_ZmpB,_truncated_333952..334182_POSITIVE 232 164 124 134 88 smit:SMT_981|5end_hypothetical_protein_928709..928939_POSITIVE 228 48 20 70 31 smit:SMT_591|5end_K02029_polar_amino_acid_transport_system_permease_protein_508108..508338_POSITIVE 226 167 124 164 114 smit:SMT_2079|5end_single_strand_binding_protein_1980144..1980374_POSITIVE 220 45 4 128 91 smit:SMT_136|5end_hypothetical_protein_predicted_by_Glimmer/Critica_87314..87544_POSITIVE 219 74 31 100 52 smit:SMT_521|5end_K02005_HlyD_family_secretion_protein_445566..445796_POSITIVE 218 156 115 117 84 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 217 43 3 71 35 smit:SMT_1993|5end_hypothetical_protein_1919800..1920030_NEGATIVE 214 66 21 40 4 smit:SMT_401|5end_peptide_methionine_sulfoxide_reductase_329663..329893_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 257 136 97 130 92 smit:SMT_817|3end_aminotransferase_727533..727683_NEGATIVE 248 50 8 43 7 smit:SMT_568|3end_hypothetical_protein_486389..486539_POSITIVE 244 150 108 54 15 smit:SMT_854|3end_hypothetical_protein_799322..799472_NEGATIVE 242 79 31 53 3 smit:SMT_153|3end_sensor_histidine_kinase,_putative_101960..102110_POSITIVE 218 156 115 133 100 smit:SMT_1542|3end_phosphomevalonate_kinase_1526077..1526227_NEGATIVE 217 169 128 115 64 smit:SMT_1062|3end_hypothetical_protein_1000648..1000798_POSITIVE 211 41 5 73 29 smit:SMT_2043|3end_putative_mucus_binding_protein_1954013..1954163_NEGATIVE 210 159 115 99 63 smit:SMT_181|3end_50S_ribosomal_protein_L24_120510..120660_POSITIVE 209 47 9 133 96 smit:SMT_485|3end_hypothetical_protein_420229..420379_NEGATIVE 207 175 134 133 99 smit:SMT_855|3end_dihydrofolate_reductase_799492..799642_NEGATIVE 206 168 124 76 37 smit:SMT_1363|3end_50S_ribosomal_protein_L20_1343254..1343404_NEGATIVE 204 79 31 101 51 smit:SMT_1789|3end_hypothetical_protein_1765511..1765661_POSITIVE 204 48 3 88 50 smit:SMT_1695|3end_ribulose-phosphate_3-epimerase_1678299..1678449_POSITIVE 203 86 44 148 98 smit:SMT_424|3end_transcriptional_regulatory_protein_368108..368258_POSITIVE 203 79 31 122 67 smit:SMT_253|3end_sensor_histidine_kinase_188973..189123_NEGATIVE 202 46 1 37 1 smit:SMT_1944|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1879075..1879225_NEGATIVE 202 48 4 69 18 smit:SMT_1691|3end_putative_deoxyribonuclease_1675249..1675399_POSITIVE 202 165 126 111 69 smit:SMT_334|3end_K03713_MerR_family_transcriptional_regulator,_glutamine_synthetase_repressor_273796..273946_POSITIVE 200 165 123 145 100 smit:SMT_1543|3end_diphosphomevalonate_decarboxylase_1527071..1527221_NEGATIVE 200 46 6 56 29 smit:SMT_1523|3end_ferrochelatase_1503390..1503540_NEGATIVE