Origin IGS: tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttccaactctgcttttttcttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta Mask Tandem Repeat Region ================================================ tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Find is-nt database================================================ Query_seq: SMT_1670:SMT_1671|SMT_1670:SMT_1671:K02030 polar amino acid transport system substrate-binding protein:hypothetical protein:-><-:1659356..1659481 126 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1670:SMT_1671|SMT_1670:SMT_1671:K02030 polar amino acid transport system substrate-binding protein:hypothetical protein:-><-:1659356..1659481 126 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1670:SMT_1671|SMT_1670:SMT_1671:K02030 polar amino acid transport system substrate-binding protein:hypothetical protein:-><-:1659356..1659481 126 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: - Start: 3 End: 104 .. E I F I L S C V L F S A A L Q V Q T R Y P S A S T T Q I Q N E F L M ...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1670:SMT_1671|SMT_1670:SMT_1671:K02030 polar amino acid transport system substrate-binding protein:hypothetical protein:-><-:1659356..1659481 126 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Intra-Species Hit: Count: 37 Min: 1 Max: 126 Len: 126 Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 9.0E-66 bit: 250.0 Len: 126 Query Start:1 Query End:126 Subject Strand: POSITIVE Subject Start: 1 Subject End: 126 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaaaaaagcagagttggaag Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-52 bit: 206.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 22 Subject End: 125 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 3.0E-50 bit: 198.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 327 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 5.0E-49 bit: 194.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 27 Subject End: 130 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 2.0E-48 bit: 192.0 Len: 101 Query Start:4 Query End:104 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 114 ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 2.0E-48 bit: 192.0 Len: 101 Query Start:4 Query End:104 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 114 ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 2.0E-48 bit: 192.0 Len: 101 Query Start:4 Query End:104 Subject Strand: POSITIVE Subject Start: 1 Subject End: 101 ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ...tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 7.0E-48 bit: 190.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 110 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 7.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 7.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 560 Subject End: 662 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 3.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 294 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtataa.................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 4.0E-43 bit: 174.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 46 Subject End: 152 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataaga.................. tactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtataaga.................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 100 Subject End: 203 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 4.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 255 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 4.0E-43 bit: 174.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 76 Subject End: 179 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 2.0E-42 bit: 172.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 152 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 1.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 208 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 207 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtat...................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 107 Subject End: 209 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 107 Query Start:1 Query End:107 Subject Strand: NEGATIVE Subject Start: 173 Subject End: 279 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... tactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtataag................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 79 Subject End: 181 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 102 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta....................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 7.0E-39 bit: 161.0 Len: 101 Query Start:1 Query End:101 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 155 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagag......................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagag......................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 6.0E-36 bit: 151.0 Len: 108 Query Start:1 Query End:108 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 121 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataaga.................. tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagtacaaga.................. Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 115 Subject End: 217 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 6.0E-33 bit: 141.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 126 Subject End: 227 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta....................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 6.0E-33 bit: 141.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 53 Subject End: 154 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta....................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-26 bit: 119.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 258 Subject End: 360 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-23 bit: 109.0 Len: 107 Query Start:1 Query End:107 Subject Strand: POSITIVE Subject Start: 1 Subject End: 106 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagtataag................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 8.0E-20 bit: 97.6 Len: 49 Query Start:56 Query End:104 Subject Strand: POSITIVE Subject Start: 136 Subject End: 184 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... HSP 2 e-value: 2.0E-8 bit: 60.0 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 34 Subject End: 75 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaaaagcaaactatgaagctacccgca.................................................................................... Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 69 Subject End: 115 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 49 Query Start:56 Query End:104 Subject Strand: POSITIVE Subject Start: 216 Subject End: 263 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcaacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 51 Query Start:56 Query End:106 Subject Strand: POSITIVE Subject Start: 116 Subject End: 166 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... .......................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtataa.................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 15 Subject End: 61 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 2.0E-14 bit: 79.8 Len: 40 Query Start:1 Query End:40 Subject Strand: POSITIVE Subject Start: 152 Subject End: 191 tactcaatgaaaatcaaagagcaaactaggaagctagccg...................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccg...................................................................................... HSP 2 e-value: 5.0E-12 bit: 71.9 Len: 48 Query Start:56 Query End:103 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... .......................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta....................... Subject: smit_SMT_365_SMT_366|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[301808,302224]|417 HSP 1 e-value: 8.0E-14 bit: 77.8 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 347 Subject End: 393 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctggccgcaggctg............................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:56 Query End:106 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 291 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... .......................................................tacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 159 Subject End: 200 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagaccaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 1.0E-12 bit: 73.8 Len: 37 Query Start:70 Query End:106 Subject Strand: POSITIVE Subject Start: 237 Subject End: 273 .....................................................................gctgacgtggtttgaatttgattttcgaagagtataa.................... .....................................................................gctgacgtggtttgaatttgattttcgaagagtataa.................... Inter-species Hit: Count: 55 Min: 1 Max: 109 Len: 109 Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 8.0E-54 bit: 210.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 190 Subject End: 295 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 69 Subject End: 172 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagtat...................... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 7.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta....................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 7.0E-45 bit: 180.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 62 Subject End: 164 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta....................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 3.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 149 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 3.0E-44 bit: 178.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 11 Subject End: 116 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtataa.................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 1.0E-40 bit: 167.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 117 Subject End: 220 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagtat...................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 62 Subject End: 164 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta....................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 4.0E-40 bit: 165.0 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 62 Subject End: 164 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta....................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 88 Subject End: 191 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtat...................... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 110 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtat...................... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 55 Subject End: 158 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtat...................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 110 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtat...................... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:1 Query End:104 Subject Strand: POSITIVE Subject Start: 94 Subject End: 197 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtat...................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 1.0E-34 bit: 147.0 Len: 106 Query Start:1 Query End:106 Subject Strand: POSITIVE Subject Start: 11 Subject End: 115 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 4.0E-31 bit: 135.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 248 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat...................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 4.0E-31 bit: 135.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 248 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat...................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 6.0E-30 bit: 131.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 237 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagtataa.................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 6.0E-30 bit: 131.0 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 237 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... tactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagtataa.................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 9.0E-29 bit: 127.0 Len: 104 Query Start:1 Query End:104 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 248 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... tactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagtat...................... Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 226 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 79 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 152 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 51 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_008533_SPD_0549_SPD_0550|lipoprotein, putative:ribosomal protein L11|POSITIVE:POSITIVE|[561971,562278]|308 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 45 Query Start:59 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ..........................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... ..........................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta....................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 51 Query Start:56 Query End:106 Subject Strand: NEGATIVE Subject Start: 1858 Subject End: 1908 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... .......................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtataa.................... HSP 2 e-value: 8.0E-14 bit: 77.8 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2009 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg............................................................................... Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 226 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 79 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 152 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 51 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003098_spr0554_spr0555|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[554441,554748]|308 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 45 Query Start:59 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ..........................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... ..........................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta....................... Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 225 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 79 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 152 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg............................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 51 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_0629_SP_0630|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[596487,596794]|308 HSP 1 e-value: 3.0E-16 bit: 85.7 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg............................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 45 Query Start:59 Query End:103 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ..........................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... ..........................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta....................... Subject: NC_008533_SPD_0790_SPD_0791|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[809280,810395]|1116 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 250 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 275 Subject End: 316 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 169 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003098_spr1709_spr1710|Dextransucrase (sucrose 6-glucosyltransferase):ABC transporter membrane spanning permease - multiple sugars|NEGATIVE:NEGATIVE|[1682434,1682790]|357 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 316 Subject End: 357 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 54 Query Start:56 Query End:109 Subject Strand: NEGATIVE Subject Start: 203 Subject End: 255 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaa................. .......................................................tacggcaaggtgaagctgacgtggtttgaaga-gattttcgaagagtataagaa................. Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 378 Subject End: 419 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 5.0E-9 bit: 61.9 Len: 47 Query Start:60 Query End:106 Subject Strand: POSITIVE Subject Start: 484 Subject End: 529 ...........................................................gtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... ...........................................................gtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: NC_003098_spr0797_spr0798|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[801749,802864]|1116 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 250 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 275 Subject End: 316 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 169 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_1894_SP_1895|sucrose phosphorylase:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1801040,1801396]|357 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 316 Subject End: 357 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 54 Query Start:56 Query End:109 Subject Strand: NEGATIVE Subject Start: 203 Subject End: 255 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataagaa................. .......................................................tacggcaaggtgaagctgacgtggtttgaaga-gattttcgaagagtataagaa................. Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 261 Subject End: 302 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 51 Query Start:56 Query End:106 Subject Strand: POSITIVE Subject Start: 406 Subject End: 455 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: NC_003028_SP_0897_SP_0899|pyruvate kinase:hypothetical protein|POSITIVE:POSITIVE|[852843,854645]|1803 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 205 Subject End: 246 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 145 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 44 Subject End: 85 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 49 Query Start:56 Query End:104 Subject Strand: POSITIVE Subject Start: 326 Subject End: 373 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtagggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 1.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:56 Query End:106 Subject Strand: POSITIVE Subject Start: 148 Subject End: 197 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataa.................... .......................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtataa.................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 5.0E-15 bit: 81.8 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 545 Subject End: 593 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat...................... HSP 2 e-value: 5.0E-12 bit: 71.9 Len: 40 Query Start:1 Query End:40 Subject Strand: NEGATIVE Subject Start: 655 Subject End: 694 tactcaatgaaaatcaaagagcaaactaggaagctagccg...................................................................................... tactcaatgaaaatcaaagagcaaactaggaaactagccg...................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 8.0E-14 bit: 77.8 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 170 Subject End: 272 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta....................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 8.0E-14 bit: 77.8 Len: 103 Query Start:1 Query End:103 Subject Strand: POSITIVE Subject Start: 170 Subject End: 272 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta....................... tactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta....................... Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 46 Query Start:62 Query End:107 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 147 .............................................................aaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... .............................................................aaggcgacgttgacgtggtttgaattggattttcgaagagtataag................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 tactcaatgaaaatcaaagagcaaactaggaagctagccgc..................................................................................... tactcaatgaaaatcaaagaacaaactaggtaactagccgc..................................................................................... Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 963 Subject End: 1004 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaaactagccgca.................................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:57 Query End:107 Subject Strand: NEGATIVE Subject Start: 807 Subject End: 856 ........................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... ........................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtataag................... Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 46 Query Start:62 Query End:107 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 147 .............................................................aaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... .............................................................aaggcgacgttgacgtggtttgaattggattttcgaagagtataag................... HSP 2 e-value: 7.0E-8 bit: 58.0 Len: 41 Query Start:1 Query End:41 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 tactcaatgaaaatcaaagagcaaactaggaagctagccgc..................................................................................... tactcaatgaaaatcaaagaacaaactaggtaactagccgc..................................................................................... Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 465 Subject End: 506 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaaactagccgca.................................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:57 Query End:107 Subject Strand: NEGATIVE Subject Start: 309 Subject End: 358 ........................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... ........................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtataag................... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 172 Subject End: 213 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaagctaaccgca.................................................................................... HSP 2 e-value: 3.0E-10 bit: 65.9 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 65 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 3.0E-13 bit: 75.8 Len: 42 Query Start:1 Query End:42 Subject Strand: NEGATIVE Subject Start: 465 Subject End: 506 tactcaatgaaaatcaaagagcaaactaggaagctagccgca.................................................................................... tactcaatgaaaatcaaagagcaaactaggaaactagccgca.................................................................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 51 Query Start:57 Query End:107 Subject Strand: NEGATIVE Subject Start: 309 Subject End: 358 ........................................................acggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtataag................... ........................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtataag................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 102 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtat...................... HSP 2 e-value: 2.0E-11 bit: 69.9 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 205 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 1.0E-12 bit: 73.8 Len: 49 Query Start:56 Query End:104 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 102 .......................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... .......................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtat...................... HSP 2 e-value: 5.0E-9 bit: 61.9 Len: 47 Query Start:1 Query End:47 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 205 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg............................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 2.0E-11 bit: 69.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 202 Subject End: 248 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg............................................................................... HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 50 Query Start:55 Query End:104 Subject Strand: POSITIVE Subject Start: 303 Subject End: 351 ......................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ......................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 2.0E-11 bit: 69.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 202 Subject End: 248 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg............................................................................... HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 50 Query Start:55 Query End:104 Subject Strand: POSITIVE Subject Start: 303 Subject End: 351 ......................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ......................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat...................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 2.0E-11 bit: 69.9 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 107 Subject End: 153 tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg............................................................................... tactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg............................................................................... HSP 2 e-value: 4.0E-6 bit: 52.0 Len: 50 Query Start:55 Query End:104 Subject Strand: POSITIVE Subject Start: 208 Subject End: 256 ......................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat...................... ......................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat...................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAAGCUGUACUUGAGUACGGUAAGGCGACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUAAGAA (((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..)))))...... (-43.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUUAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUCGCCUUACCGUACUCAAGUACAGCUUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUA ......(((((...((((((((((..(((((...(..((((((((....(.((((....)))).)...)))))..)))..)..)))))...))))))))))...))))) (-30.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1018 80 31 197 148 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 1018 80 31 184 135 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 948 70 21 188 139 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 948 70 21 200 151 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 948 70 21 213 164 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 948 70 21 197 148 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 922 79 31 231 183 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 866 60 11 226 177 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 841 60 11 229 180 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 839 60 11 175 126 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 824 100 52 49 1 smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE 741 47 1 162 116 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 740 46 1 221 173 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 739 47 1 152 106 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 666 45 3 231 189 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 646 46 1 196 149 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 605 46 1 161 113 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 600 100 56 81 38 smit:SMT_958|5end_hypothetical_protein_predicted_by_Glimmer/Critica_905052..905282_POSITIVE 566 100 56 216 173 smit:SMT_677|5end_DNA_topoisomerase_I_587318..587548_NEGATIVE 557 46 1 173 125 smit:SMT_1544|5end_mevalonate_kinase_1528884..1529114_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1072 80 31 68 19 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 1043 80 31 63 14 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 1018 80 31 63 14 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 990 80 31 67 18 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 961 80 31 68 19 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 948 70 21 58 9 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 943 80 31 60 11 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 938 80 31 67 18 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 909 80 31 67 18 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 909 80 31 67 18 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 904 80 31 67 18 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 866 70 21 61 6 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 835 80 32 49 1 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 786 60 14 47 1 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 752 100 51 51 2 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 716 100 56 87 43 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 674 100 54 61 17 smit:SMT_1815|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1788899..1789049_NEGATIVE 646 46 1 114 67 smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE 636 100 57 43 1 smit:SMT_1872|3end_K03217_preprotein_translocase_YidC_subunit_1830883..1831033_NEGATIVE 622 100 54 81 37 smit:SMT_124|3end_hypothetical_protein_75590..75740_NEGATIVE