Origin IGS: aatacaaccacaccttgtaaacctacaaagtgtggtatttttattttcatactcttcgaaaataaaaataccacgtcagcttcgccttgccgtatatgtgtgactgactttgtcagtcttatctacaacctcaaagcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgaatatcaaatacctcccgcaactcaacaagtatctttgaatcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcaattaacttgaataaggaaaaggaaccctcggtcaaacgactgagggttattttttggactattaaattccttaagtcaggtattgaaatgtctgaccgggattcaaagatacttgttgagttgcgggaggtatttgatattcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgctcaaagcaccgctttgaggttgtagataagactgacaaagtcagtcacacatatacggcaaggcgaagctgacgtggtatttttattttcgaagagtatgaaaataaaaataccacactttgtaggtttacaaggtgtggttgtatt Mask Tandem Repeat Region ================================================ aatacaaccacaccttgtaaacctacaaagtgtggtatttttattttcatactcttcgaaaataaaaataccacgtcagcttcgccttgccgtatatgtgtgactgactttgtcagtcttatctacaacctcaaagcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgaatatcaaatacctcccgcaactcaacaagtatctttgaatcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Find is-nt database================================================ Query_seq: SMT_1623:SMT_1624|SMT_1623:SMT_1624:K03498 trk system potassium uptake protein TrkH:formate acetyltransferase:-><-:1611176..1611510 335 aatacaaccacaccttgtaaacctacaaagtgtggtatttttattttcatactcttcgaaaataaaaataccacgtcagcttcgccttgccgtatatgtgtgactgactttgtcagtcttatctacaacctcaaagcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgaatatcaaatacctcccgcaactcaacaagtatctttgaatcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1623:SMT_1624|SMT_1623:SMT_1624:K03498 trk system potassium uptake protein TrkH:formate acetyltransferase:-><-:1611176..1611510 335 aatacaaccacaccttgtaaacctacaaagtgtggtatttttattttcatactcttcgaaaataaaaataccacgtcagcttcgccttgccgtatatgtgtgactgactttgtcagtcttatctacaacctcaaagcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgaatatcaaatacctcccgcaactcaacaagtatctttgaatcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1623:SMT_1624|SMT_1623:SMT_1624:K03498 trk system potassium uptake protein TrkH:formate acetyltransferase:-><-:1611176..1611510 335 aatacaaccacaccttgtaaacctacaaagtgtggtatttttattttcatactcttcgaaaataaaaataccacgtcagcttcgccttgccgtatatgtgtgactgactttgtcagtcttatctacaacctcaaagcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgaatatcaaatacctcccgcaactcaacaagtatctttgaatcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 8 Min: 28 Max: 231 Len: 204 Subject: UniRef90_Q04I61 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 1.0E-9 bit: 59.7 Len: 102 Query Start:94 Query End:195 Subject Strand: null Subject Start: 24 Subject End: 58 ............................................................................................. Y S M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S - H T Y ............................................................................................................................................ ............................................................................................. Y S M K I K V Q T R K L A A G C S K H C F E V V D E T D E V S N H T Y ............................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 24.6 Len: 36 Query Start:68 Query End:103 Subject Strand: null Subject Start: 55 Subject End: 66 ................................................................... S H I Y G K A K L T W Y ........................................................................................................................................................................................................................................ ................................................................... N H T Y G K A T L T W F ........................................................................................................................................................................................................................................ Subject: UniRef90_Q04IR5 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 8.0E-9 bit: 61.6 Len: 162 Query Start:28 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 55 ........................... M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S - H T Y T A R R S * R G I F I F E E Y E N K N T T L .................................................................................................................................................. ........................... M K I K E Q T R K L A A G C S K H C F E V V D E T D E V S N H T Y G K V K L T W F E E I F E E Y K K S S W N L .................................................................................................................................................. Subject: UniRef90_Q04KB8 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 2.0E-8 bit: 60.1 Len: 147 Query Start:43 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 50 .......................................... M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S - H T Y T A R R S * R G I F I F E E Y E N .................................................................................................................................................. .......................................... M K I K E Q T R K L A A G Y S K H S F E V V D E T D E V S N H T Y S K A T L T W F E E I F E E Y K N .................................................................................................................................................. Subject: UniRef90_Q04LB4 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 9.0E-8 bit: 55.5 Len: 87 Query Start:103 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 29 ...................................................................................................... M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S .................................................................................................................................................. ...................................................................................................... M K I K E Q T R K L A A G C S K H C F E V V D R T D E V S .................................................................................................................................................. HSP 2 e-value: 9.0E-8 bit: 22.7 Len: 36 Query Start:68 Query End:103 Subject Strand: null Subject Start: 45 Subject End: 56 ................................................................... S H I Y G K A K L T W Y ........................................................................................................................................................................................................................................ ................................................................... N H T Y G R A T M T W F ........................................................................................................................................................................................................................................ Subject: UniRef90_Q04I51 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 9.0E-8 bit: 54.3 Len: 87 Query Start:103 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 29 ...................................................................................................... M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S .................................................................................................................................................. ...................................................................................................... M K I K E Q T R K L A A G C S K H C F E V M D R T D E V S .................................................................................................................................................. HSP 2 e-value: 9.0E-8 bit: 23.9 Len: 36 Query Start:68 Query End:103 Subject Strand: null Subject Start: 45 Subject End: 56 ................................................................... S H I Y G K A K L T W Y ........................................................................................................................................................................................................................................ ................................................................... N H T Y G E V K L T W F ........................................................................................................................................................................................................................................ Subject: UniRef90_Q04M07 Cluster: Hypothetical protein; n=2; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 9.0E-8 bit: 58.2 Len: 144 Query Start:46 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 49 ............................................. M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S - H T Y T A R R S * R G I F I F E E Y E .................................................................................................................................................. ............................................. M K I K E Q T R K L A A G C S K Q C F E V V D E T D E V S N H T Y G K A K L M W F E E I F E E Y K .................................................................................................................................................. Subject: UniRef90_Q04L28 Cluster: Hypothetical protein; n=2; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 2.0E-7 bit: 57.4 Len: 147 Query Start:43 Query End:189 Subject Strand: null Subject Start: 1 Subject End: 65 .......................................... M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S - - - - - - - - - - - - - - - - H T Y T A R R S * R G I F I F E E Y E N .................................................................................................................................................. .......................................... M K I K E Q T R K L A A G C S K H C F E V A D K T D E V S S K H G F E V V D E T D E V S N H T Y G K A T L T R I E E I F E E Y K S .................................................................................................................................................. Subject: UniRef90_Q04LP5 Cluster: Hypothetical protein; n=1; Streptococcus pneumoniae D39|Rep: Hypothetical protein - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) HSP 1 e-value: 1.0E-6 bit: 54.3 Len: 129 Query Start:103 Query End:231 Subject Strand: null Subject Start: 17 Subject End: 56 ...................................................................................................... F K D T C * V A G G I * Y S M K I K E Q T R K L A A G C S K H R F E V V D K T D K V S ........................................................................................................ ...................................................................................................... F K P T - - - S N N V L Y S M K T K E Q T R K L A S G C S K H C F E V V D G T D V V S ........................................................................................................ aatacaaccacaccttgtaaacctacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 2 End: 100 . M Q P H L V N L Q S V V F L F S Y S S K I K I P R Q L R L A V Y V ........................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 37 End: 144 .................................... M F I F I L F E N K N T T S A S P C R I C V T D F V S L I Y N L K A V L ............................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 104 End: 259 ....................................................................................................... M T L S V L S T T S K R C F E Q P A A S F L V C S L I F I E Y Q I P P A T Q Q V S L N P G Q T F Q Y L T ............................................................................ Protein_Len: 47 Strand: + Start: 193 End: 333 ................................................................................................................................................................................................ M S N T S R N S T S I F E S R S D I S I P D L R N L I V Q K I T L S R L T E G S F S L F K L I .. Protein_Len: 48 Strand: - Start: 189 End: 332 ............................................................................................................................................................................................ Q I D F V E R L E V L I K S D R D S M E I G S K L F K I T W F I V R L R K V S P E K E K N L N M ... Protein_Len: 37 Strand: - Start: 79 End: 189 .............................................................................. S R R A T Y T H S V K D T K D V V E F R H K S C G A A L K R T Q E K I K M .................................................................................................................................................. Protein_Len: 40 Strand: - Start: 3 End: 122 .. V V V G Q L G V F H P I K I K M S K S F L F V V D A E G Q R I H T V S K T L R M ..................................................................................................................................................................................................................... aatacaaccacaccttgtaaacctacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aatacaaccacaccttgtaaacctacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 83 HP_score: -9.0 Tail_Score: -4.02132 Start: 30 End: 76 Full_Region: ggcaaggcgaagctg acgtggtatttttattttcgaa gag tatgaaaataaaaataccacac tttgtaggtttacaa .............................acgtggtatttttattttcgaagagtatgaaaataaaaataccacac................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 84 HP_score: -12.5 Tail_Score: -3.00797 Start: 31 End: 75 Full_Region: gcaaggcgaagctga cgtggtatttttattttcgaa gag tatgaaaataaaaataccaca ctttgtaggtttaca ..............................cgtggtatttttattttcgaagagtatgaaaataaaaataccaca.................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -10.9 Tail_Score: -3.48924 Start: 102 End: 118 Full_Region: TTGCCGTATATGTGT GACTGAC TTT GTCAGTC TTATCTACAACCTCA .....................................................................................................GACTGACTTTGTCAGTC......................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -8.3 Tail_Score: -3.35996 Start: 129 End: 149 Full_Region: agctagccgcaggtt gctcaaagc acc gctttgagg ttgtagataagactg ................................................................................................................................gctcaaagcaccgctttgagg.......................................................................................................................................................................................... TransTerm Strand: - Conf: 81 HP_score: -11.8 Tail_Score: -2.61383 Start: 130 End: 148 Full_Region: gctagccgcaggttg ctcaaagc acc gctttgag gttgtagataagact .................................................................................................................................ctcaaagcaccgctttgag........................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -4.9 Tail_Score: -4.56133 Start: 283 End: 312 Full_Region: TTAATAGTCCAAAAA ATAACCCTCAGTC GTTT GACCGAGGGTTCC TTTTCCTTATTCAAG ..........................................................................................................................................................................................................................................................................................ATAACCCTCAGTCGTTTGACCGAGGGTTCC....................... TransTerm Strand: + Conf: 80 HP_score: -10.1 Tail_Score: -3.78229 Start: 287 End: 308 Full_Region: TAGTCCAAAAAATAA CCCTCAGTC GTTT GACCGAGGG TTCCTTTTCCTTATT ..............................................................................................................................................................................................................................................................................................CCCTCAGTCGTTTGACCGAGGG........................... Find igs database================================================ Query_seq: SMT_1623:SMT_1624|SMT_1623:SMT_1624:K03498 trk system potassium uptake protein TrkH:formate acetyltransferase:-><-:1611176..1611510 335 aatacaaccacaccttgtaaacctacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga Intra-Species Hit: Count: 1 Min: 1 Max: 335 Len: 335 Subject: smit_SMT_1623_SMT_1624|K03498 trk system potassium uptake protein TrkH:formate acetyltransferase|POSITIVE:NEGATIVE|[1611176, 1611510]|335 HSP 1 e-value: 4.0E-52 bit: 206.0 Len: 104 Query Start:232 Query End:335 Subject Strand: POSITIVE Subject Start: 232 Subject End: 335 .......................................................................................................................................................................................................................................tcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga .......................................................................................................................................................................................................................................tcccggtcagacatttcaatacctgacttaaggaatttaatagtccaaaaaataaccctcagtcgtttgaccgagggttccttttccttattcaagttaattga HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 27 Query Start:1 Query End:27 Subject Strand: POSITIVE Subject Start: 1 Subject End: 27 aatacaaccacaccttgtaaacctaca.................................................................................................................................................................................................................................................................................................................... aatacaaccacaccttgtaaacctaca.................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUACAACCACACCUUGUAAACCUACAAAGUGUGGUAUUUUUAUUUUCAUACUCUUCGAAAAUAAAAAUACCACGUCAGCUUCGCCUUGCCGUAUAUGUGUGACUGACUUUGUCAGUCUUAUCUACAACCUCAAAGCGGUGCUUUGAGCAACCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAAUAUCAAAUACCUCCCGCAACUCAACAAGUAUCUUUGAAUCCCGGUCAGACAUUUCAAUACCUGACUUAAGGAAUUUAAUAGUCCAAAAAAUAACCCUCAGUCGUUUGACCGAGGGUUCCUUUUCCUUAUUCAAGUUAAUUGA .........((((.(((((....))))).))))(((((((((((((((.........)))))))))))))))..(((((....((...((((((..((((.(((((((...))))))).....))))..((((((((...)))))))).....))))))..))......(((((...((((((.(((...))).))))))......(((....((((.........))))....))).)))))..........))))).(((((((..................(((((((.(((....))).)))))))....))))))).((((.....)))) (-87.45) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCAAUUAACUUGAAUAAGGAAAAGGAACCCUCGGUCAAACGACUGAGGGUUAUUUUUUGGACUAUUAAAUUCCUUAAGUCAGGUAUUGAAAUGUCUGACCGGGAUUCAAAGAUACUUGUUGAGUUGCGGGAGGUAUUUGAUAUUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGUUGCUCAAAGCACCGCUUUGAGGUUGUAGAUAAGACUGACAAAGUCAGUCACACAUAUACGGCAAGGCGAAGCUGACGUGGUAUUUUUAUUUUCGAAGAGUAUGAAAAUAAAAAUACCACACUUUGUAGGUUUACAAGGUGUGGUUGUAUU .((((((.((((......((((((.(((((((((((....))))))))))).)))))).((.((((((((.((((..(((((..((....))..)))))((.(((((((.........))))))).)).)))).)))))))).)).....(((((...((((((.((.((.......))..)).))))))..(((..(((((((..((.(((.....(((((((...))))))).....)))))..)))))))..)))...((((((((((((((((((.......))))))))))))))))))........))))).))))...)))))).... (-111.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 889 170 121 72 23 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 889 170 121 72 23 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 878 160 111 223 173 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 835 170 121 72 23 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 785 180 131 82 33 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 754 170 121 72 23 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 739 192 152 205 165 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 739 192 152 223 183 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 739 192 152 205 165 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 739 192 152 205 165 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 673 190 145 195 150 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 668 158 111 231 181 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 636 119 71 225 176 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 582 94 51 218 172 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 582 94 51 188 142 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 418 90 44 207 160 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 417 87 49 215 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 403 89 49 173 123 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 392 189 141 198 143 smit:SMT_1335|5end_RNA_polymerase_sigma_factor_RpoD_1310201..1310431_NEGATIVE 372 81 49 231 196 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 893 190 141 81 32 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 835 170 121 51 2 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 833 170 121 65 16 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 813 180 131 75 26 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 783 190 143 51 4 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 765 190 141 52 1 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 739 192 152 90 50 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 739 192 152 90 50 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 739 192 152 90 50 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 738 180 131 75 26 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 677 192 154 87 49 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 677 192 154 66 28 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 677 192 154 49 11 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 660 192 152 51 11 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 654 198 152 97 47 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 626 192 156 37 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 615 95 51 148 102 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 598 192 155 42 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 436 100 51 90 37 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 403 89 49 77 27 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE