Origin IGS: ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatgaaactccttctcagaaaagataatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtataaaacaaaaaaccgcctagataatacctaaacggatgcttgaaataatctaacaagttataactttgctagtccatttagatattcatctatatggaccacaatcaaaaatcttagccacatagatacaaacaaattgcttgaactgtttgcatccatggtgacatgtctacaaacactatctaaagtag Mask Tandem Repeat Region ================================================ ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Find is-nt database================================================ Query_seq: SMT_1601:SMT_1602|SMT_1601:SMT_1602:hypothetical protein predicted by Glimmer/Critica:hypothetical protein:->->:1592204..1592524 321 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1601:SMT_1602|SMT_1601:SMT_1602:hypothetical protein predicted by Glimmer/Critica:hypothetical protein:->->:1592204..1592524 321 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1601:SMT_1602|SMT_1601:SMT_1602:hypothetical protein predicted by Glimmer/Critica:hypothetical protein:->->:1592204..1592524 321 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 33 End: 131 ................................ M D A N S S S N L F V S M W L R F L I V V H I D E Y L N G L A K L .............................................................................................................................................................................................. Protein_Len: 41 Strand: + Start: 136 End: 258 ....................................................................................................................................... M L D Y F K H P F R Y Y L G G F L F Y T L R K S N S N H V N V A L P Y S S T A C G ............................................................... Protein_Len: 38 Strand: + Start: 191 End: 304 .............................................................................................................................................................................................. M L F E N Q I Q T T S T S P C R T Q V Q P A A S F L V C S L I F I E Y Y L F ................. Protein_Len: 33 Strand: - Start: 2 End: 100 . V K S L T Q L C T V M S A F L E L L K N T D I H S L N K I T T W M ............................................................................................................................................................................................................................. ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -7.0 Tail_Score: -5.86976 Start: 157 End: 179 Full_Region: GATTATTTCAAGCAT CCGTTTAGGT ATT ATCTAGGCGG TTTTTTGTTTTATAC ............................................................................................................................................................CCGTTTAGGTATTATCTAGGCGG.............................................................................................................................................. Find igs database================================================ Query_seq: SMT_1601:SMT_1602|SMT_1601:SMT_1602:hypothetical protein predicted by Glimmer/Critica:hypothetical protein:->->:1592204..1592524 321 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Intra-Species Hit: Count: 39 Min: 1 Max: 321 Len: 321 Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 0.0 bit: 636.0 Len: 321 Query Start:1 Query End:321 Subject Strand: POSITIVE Subject Start: 1 Subject End: 321 ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt ctactttagatagtgtttgtagacatgtcaccatggatgcaaacagttcaagcaatttgtttgtatctatgtggctaagatttttgattgtggtccatatagatgaatatctaaatggactagcaaagttataacttgttagattatttcaagcatccgtttaggtattatctaggcggttttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattatcttttctgagaaggagtttcatt Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 9.0E-53 bit: 208.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 152 Subject End: 256 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 9.0E-53 bit: 208.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 179 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 3.0E-52 bit: 206.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 50 Subject End: 153 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 104 Subject End: 208 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 8.0E-50 bit: 198.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat.......................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 102 Query Start:194 Query End:295 Subject Strand: POSITIVE Subject Start: 55 Subject End: 156 .................................................................................................................................................................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .................................................................................................................................................................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:192 Query End:296 Subject Strand: POSITIVE Subject Start: 19 Subject End: 123 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt......................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 224 Subject End: 328 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 559 Subject End: 662 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 130 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtat.......................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 106 Query Start:189 Query End:294 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta........................... ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta........................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 101 Query Start:191 Query End:291 Subject Strand: POSITIVE Subject Start: 14 Subject End: 114 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.............................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.............................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 203 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 125 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 101 Query Start:191 Query End:291 Subject Strand: POSITIVE Subject Start: 14 Subject End: 114 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.............................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.............................. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 101 Query Start:191 Query End:291 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 101 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga.............................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.............................. Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 154 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 7.0E-41 bit: 168.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 105 Subject End: 209 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 209 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 108 Query Start:189 Query End:296 Subject Strand: POSITIVE Subject Start: 174 Subject End: 281 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt......................... ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt......................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 181 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 109 Query Start:189 Query End:297 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 150 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtatta........................ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 217 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 227 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtat.......................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 360 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat.......................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 106 Query Start:189 Query End:294 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 105 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta........................... ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccatgccagcttcgccttggcgtactcaagtatagcctgcgcctagcttcccagtttgctctttgattttcattgagta........................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 52 Query Start:188 Query End:239 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 167 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. HSP 2 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:248 Query End:297 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 61 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtatta........................ Subject: smit_SMT_235_SMT_236|hypothetical protein:ribosomal small subunit pseudouridine synthase A|POSITIVE:POSITIVE|[174452,174764]|313 HSP 1 e-value: 9.0E-19 bit: 95.6 Len: 48 Query Start:248 Query End:295 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 59 Query Start:181 Query End:239 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 263 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ....................................................................................................................................................................................ttttcgtttcatactcttcaaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: smit_SMT_365_SMT_366|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[301808,302224]|417 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 347 Subject End: 396 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcctgcggccagcttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 53 Query Start:187 Query End:239 Subject Strand: POSITIVE Subject Start: 240 Subject End: 291 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..........................................................................................................................................................................................ttttatactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgta.................................................................................. Subject: smit_SMT_1569_SMT_1570|dihydroxy-acid dehydratase:hypothetical protein|POSITIVE:NEGATIVE|[1563129,1563339]|211 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:251 Query End:295 Subject Strand: POSITIVE Subject Start: 110 Subject End: 154 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgttctttgattttcattgagtat.......................... HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 49 Query Start:191 Query End:239 Subject Strand: POSITIVE Subject Start: 5 Subject End: 52 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta.................................................................................. Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 184 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta.................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:251 Query End:295 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 77 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtat.......................... Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 41 Query Start:255 Query End:295 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 199 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 354 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 48 Query Start:251 Query End:298 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 202 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtattat....................... ..........................................................................................................................................................................................................................................................cctgcggctagcttcctagtttggtctttgattttcattgagtattat....................... HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 36 Query Start:188 Query End:223 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 274 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtca.................................................................................................. ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtca.................................................................................................. Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 40 Query Start:255 Query End:294 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagta........................... ..............................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta........................... HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:192 Query End:239 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta.................................................................................. Inter-species Hit: Count: 65 Min: 181 Max: 298 Len: 118 Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 9.0E-56 bit: 218.0 Len: 110 Query Start:188 Query End:297 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 117 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 191 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 158 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 7 Subject End: 111 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 197 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 110 Query Start:188 Query End:297 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 116 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 110 Query Start:188 Query End:297 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 296 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtatta........................ Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 104 Query Start:192 Query End:295 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 7.0E-41 bit: 168.0 Len: 105 Query Start:191 Query End:295 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 220 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 104 Query Start:191 Query End:294 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 172 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..............................................................................................................................................................................................atactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta........................... Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 4.0E-36 bit: 153.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat.......................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 4.0E-36 bit: 153.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat.......................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 108 Query Start:187 Query End:294 Subject Strand: POSITIVE Subject Start: 43 Subject End: 149 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..........................................................................................................................................................................................ttttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta........................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:191 Query End:295 Subject Strand: POSITIVE Subject Start: 145 Subject End: 249 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat.......................... Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 115 Query Start:181 Query End:295 Subject Strand: NEGATIVE Subject Start: 210 Subject End: 323 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ....................................................................................................................................................................................tttttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 115 Query Start:181 Query End:295 Subject Strand: NEGATIVE Subject Start: 210 Subject End: 323 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ....................................................................................................................................................................................tttttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 6.0E-29 bit: 129.0 Len: 113 Query Start:185 Query End:297 Subject Strand: POSITIVE Subject Start: 129 Subject End: 240 ........................................................................................................................................................................................tgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ........................................................................................................................................................................................tgttttatactcttcgaaaatctc-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtatta........................ Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 6.0E-29 bit: 129.0 Len: 113 Query Start:185 Query End:297 Subject Strand: POSITIVE Subject Start: 129 Subject End: 240 ........................................................................................................................................................................................tgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ........................................................................................................................................................................................tgttttatactcttcgaaaatctt-ttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtatta........................ Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 115 Query Start:181 Query End:295 Subject Strand: NEGATIVE Subject Start: 220 Subject End: 333 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ....................................................................................................................................................................................tttttgtttaatactctttgaaaatctc-ttcaaaccacgtcagctttgctttaccgtactcaagtacagcctgcggctcgcttcctagtttgctctttgattttcattgagtat.......................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 52 Query Start:188 Query End:239 Subject Strand: POSITIVE Subject Start: 1857 Subject End: 1908 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. HSP 2 e-value: 6.0E-20 bit: 99.6 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2012 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 249 Subject End: 298 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 3.0E-9 bit: 63.9 Len: 52 Query Start:188 Query End:239 Subject Strand: POSITIVE Subject Start: 98 Subject End: 148 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 49 Query Start:248 Query End:296 Subject Strand: NEGATIVE Subject Start: 38 Subject End: 86 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt......................... .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt......................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 48 Query Start:192 Query End:239 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 187 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 49 Query Start:191 Query End:239 Subject Strand: POSITIVE Subject Start: 545 Subject End: 593 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. HSP 2 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 648 Subject End: 697 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtatta........................ Subject: NC_008533_SPD_0729_SPD_0730|hemolysin-related protein:purine nucleoside phosphorylase|POSITIVE:POSITIVE|[743379,744035]|657 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 143 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 47 Query Start:188 Query End:234 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 251 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg....................................................................................... ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg....................................................................................... Subject: NC_003098_spr0792_spr0793|Type 1 restriction modification system endonuclease R:Arginine repressor|POSITIVE:NEGATIVE|[792302,792886]|585 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 51 Query Start:248 Query End:298 Subject Strand: NEGATIVE Subject Start: 261 Subject End: 311 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtattat....................... .......................................................................................................................................................................................................................................................cagcctgcagctagtttcctagtttgctctttgattttcattgagtattat....................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 52 Query Start:188 Query End:239 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 462 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaatccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003098_spr0737_spr0738|Conserved hypothetical protein, truncation:Purine nucleoside phosphorylase (inosine phosphorylase)|POSITIVE:POSITIVE|[735848,736504]|657 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 143 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 47 Query Start:188 Query End:234 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 251 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg....................................................................................... ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg....................................................................................... Subject: NC_003028_SP_1706_SP_1707|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1611668,1611851]|184 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 46 Query Start:253 Query End:298 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 74 ............................................................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtattat....................... ............................................................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtattat....................... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 47 Query Start:188 Query End:234 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 184 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg....................................................................................... ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg....................................................................................... Subject: NC_008533_SPD_0259_SPD_0260|Transglycosylase associated protein:ribosomal small subunit pseudouridine synthase A|POSITIVE:POSITIVE|[257779,258090]|312 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:251 Query End:295 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 58 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 59 Query Start:181 Query End:239 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 263 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ....................................................................................................................................................................................ttttcgtttcatactcttcaaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 49 Query Start:191 Query End:239 Subject Strand: POSITIVE Subject Start: 54 Subject End: 102 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.................................................................................. HSP 2 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:248 Query End:295 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat.......................... Subject: NC_003098_spr0255_spr0256|hypothetical protein:Ribosomal small subunit pseudouridine synthase A|POSITIVE:POSITIVE|[257778,258089]|312 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:251 Query End:295 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 58 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 59 Query Start:181 Query End:239 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 263 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ....................................................................................................................................................................................ttttcgtttcatactcttcaaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0279_SP_0280|hypothetical protein:ribosomal small subunit pseudouridine synthase A|POSITIVE:POSITIVE|[257322,257588]|267 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 45 Query Start:251 Query End:295 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 58 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 59 Query Start:181 Query End:239 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 218 ....................................................................................................................................................................................tttttgttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ....................................................................................................................................................................................ttttcgtttcatactcttcaaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 49 Query Start:191 Query End:239 Subject Strand: POSITIVE Subject Start: 54 Subject End: 102 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.................................................................................. HSP 2 e-value: 5.0E-14 bit: 79.8 Len: 48 Query Start:248 Query End:295 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtat.......................... Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:189 Query End:236 Subject Strand: POSITIVE Subject Start: 103 Subject End: 150 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc..................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc..................................................................................... HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 41 Query Start:254 Query End:294 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 .............................................................................................................................................................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta........................... .............................................................................................................................................................................................................................................................gcggctagttacctagtttgttctttgattttcattgagta........................... Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 44 Query Start:251 Query End:294 Subject Strand: POSITIVE Subject Start: 961 Subject End: 1004 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:189 Query End:238 Subject Strand: POSITIVE Subject Start: 808 Subject End: 856 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt................................................................................... Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:189 Query End:236 Subject Strand: POSITIVE Subject Start: 103 Subject End: 150 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc..................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc..................................................................................... HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 41 Query Start:254 Query End:294 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 .............................................................................................................................................................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta........................... .............................................................................................................................................................................................................................................................gcggctagttacctagtttgttctttgattttcattgagta........................... Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 44 Query Start:251 Query End:294 Subject Strand: POSITIVE Subject Start: 463 Subject End: 506 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:189 Query End:238 Subject Strand: POSITIVE Subject Start: 310 Subject End: 358 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt................................................................................... Subject: NC_008533_SPD_1458_SPD_1459|GTP pyrophosphokinase:metallo-beta-lactamase superfamily protein|NEGATIVE:POSITIVE|[1472689,1473682]|994 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 292 Subject End: 338 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcatttagtatta........................ HSP 2 e-value: 1.0E-14 bit: 81.8 Len: 49 Query Start:247 Query End:295 Subject Strand: NEGATIVE Subject Start: 854 Subject End: 902 ......................................................................................................................................................................................................................................................acagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ......................................................................................................................................................................................................................................................acagcctgcggctagctttctagtttgctctttgattttcattgagtat.......................... HSP 3 e-value: 2.0E-7 bit: 58.0 Len: 53 Query Start:187 Query End:239 Subject Strand: NEGATIVE Subject Start: 396 Subject End: 447 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..........................................................................................................................................................................................ttttatactcttcaaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 375 Subject End: 421 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 47 Query Start:187 Query End:233 Subject Strand: NEGATIVE Subject Start: 486 Subject End: 531 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgcctt........................................................................................ ..........................................................................................................................................................................................ttttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgcctt........................................................................................ Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 89 Subject End: 135 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgatttttattgagtatta........................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 48 Query Start:192 Query End:239 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 420 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0834_SP_0835|hemolysin-related protein:purine nucleoside phosphorylase, family 1|POSITIVE:POSITIVE|[783000,783652]|653 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 47 Query Start:251 Query End:297 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 143 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ..........................................................................................................................................................................................................................................................cctgcggctagtttcttagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 47 Query Start:188 Query End:234 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 251 ...........................................................................................................................................................................................tttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttg....................................................................................... ...........................................................................................................................................................................................tttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttg....................................................................................... Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 9.0E-16 bit: 85.7 Len: 43 Query Start:252 Query End:294 Subject Strand: POSITIVE Subject Start: 464 Subject End: 506 ...........................................................................................................................................................................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta........................... ...........................................................................................................................................................................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagta........................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:189 Query End:238 Subject Strand: POSITIVE Subject Start: 310 Subject End: 358 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt................................................................................... Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 306 Subject End: 355 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:189 Query End:239 Subject Strand: POSITIVE Subject Start: 65 Subject End: 114 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 50 Query Start:248 Query End:297 Subject Strand: POSITIVE Subject Start: 306 Subject End: 355 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ .......................................................................................................................................................................................................................................................cagcccgcagctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:189 Query End:239 Subject Strand: POSITIVE Subject Start: 65 Subject End: 114 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 46 Query Start:252 Query End:297 Subject Strand: NEGATIVE Subject Start: 258 Subject End: 303 ...........................................................................................................................................................................................................................................................ctgcggctagtttcctagtttgctctttgattttcattgagtatta........................ ...........................................................................................................................................................................................................................................................ctgcggctagcttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 53 Query Start:187 Query End:239 Subject Strand: NEGATIVE Subject Start: 406 Subject End: 457 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..........................................................................................................................................................................................ttttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgta.................................................................................. Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:251 Query End:295 Subject Strand: POSITIVE Subject Start: 491 Subject End: 535 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttggttttcattgagtat.......................... HSP 2 e-value: 3.0E-9 bit: 63.9 Len: 48 Query Start:191 Query End:238 Subject Strand: POSITIVE Subject Start: 340 Subject End: 386 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgt................................................................................... ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt................................................................................... Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 41 Query Start:257 Query End:297 Subject Strand: POSITIVE Subject Start: 357 Subject End: 397 ................................................................................................................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtatta........................ ................................................................................................................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtatta........................ HSP 2 e-value: 5.0E-11 bit: 69.9 Len: 51 Query Start:189 Query End:239 Subject Strand: POSITIVE Subject Start: 65 Subject End: 114 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta.................................................................................. Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat.......................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 44 Query Start:255 Query End:298 Subject Strand: NEGATIVE Subject Start: 198 Subject End: 241 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtattat....................... ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtattat....................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:191 Query End:240 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 351 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac................................................................................. Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 104 Query Start:192 Query End:295 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat.......................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 44 Query Start:255 Query End:298 Subject Strand: NEGATIVE Subject Start: 198 Subject End: 241 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtattat....................... ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtattat....................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:191 Query End:240 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 351 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac................................................................................. Subject: NC_003028_SP_1607_SP_1608|UDP-glucose 4-epimerase:oxidoreductase, DadA family protein|NEGATIVE:NEGATIVE|[1509447,1509746]|300 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 48 Query Start:189 Query End:236 Subject Strand: POSITIVE Subject Start: 103 Subject End: 150 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgcc..................................................................................... ............................................................................................................................................................................................ttatactcttcgaaaatccaattcaaactacgtcaacgtcgccttgcc..................................................................................... HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 41 Query Start:254 Query End:294 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 .............................................................................................................................................................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta........................... .............................................................................................................................................................................................................................................................gcggctagtttcctagtttgttctttgatttttattgagta........................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 44 Query Start:255 Query End:298 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 146 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtattat....................... ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtattat....................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:191 Query End:240 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 256 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtac................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac................................................................................. Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 48 Query Start:248 Query End:295 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtat.......................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 280 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0482_SP_0483|hypothetical protein:ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[463540,463904]|365 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 44 Query Start:251 Query End:294 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..........................................................................................................................................................................................................................................................cctgcggctagcttcctagtttgctctttgattttcattgagta........................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 53 Query Start:187 Query End:239 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 199 ..........................................................................................................................................................................................ttttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..........................................................................................................................................................................................ttttatactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgta.................................................................................. Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 5.0E-14 bit: 79.8 Len: 40 Query Start:256 Query End:295 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 73 ...............................................................................................................................................................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtat.......................... ...............................................................................................................................................................................................................................................................ggctagtttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 3.0E-9 bit: 63.9 Len: 48 Query Start:192 Query End:239 Subject Strand: NEGATIVE Subject Start: 272 Subject End: 318 ...............................................................................................................................................................................................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ...............................................................................................................................................................................................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgta.................................................................................. Subject: NC_008533_SPD_0077_SPD_0078|potassium uptake protein, Trk family protein:glycosyl transferase, group 2 family protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:257 Query End:297 Subject Strand: NEGATIVE Subject Start: 126 Subject End: 166 ................................................................................................................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtatta........................ ................................................................................................................................................................................................................................................................gctagtttcctagtttgatctttgattttcattgagtatta........................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:189 Query End:239 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 279 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003098_spr0071_spr0072|Trk transporter NAD+ binding protein - K+ transport:hypothetical protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:257 Query End:297 Subject Strand: NEGATIVE Subject Start: 126 Subject End: 166 ................................................................................................................................................................................................................................................................gctagtttcctagtttgctctttgattttcattgagtatta........................ ................................................................................................................................................................................................................................................................gctagtttcctagtttgatctttgattttcattgagtatta........................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:189 Query End:239 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 279 ............................................................................................................................................................................................ttatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ............................................................................................................................................................................................ttatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:255 Query End:295 Subject Strand: POSITIVE Subject Start: 248 Subject End: 288 ..............................................................................................................................................................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat.......................... ..............................................................................................................................................................................................................................................................cggctagcttcctagtttgctctttgattttcattgagtat.......................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: POSITIVE Subject Start: 138 Subject End: 185 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:248 Query End:295 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat.......................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 280 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:248 Query End:295 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 .......................................................................................................................................................................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat.......................... .......................................................................................................................................................................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat.......................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 280 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.................................................................................. Subject: NC_003028_SP_2153_SP_2156|hypothetical protein:SPFH domain/Band 7 family|POSITIVE:NEGATIVE|[2068633,2069965]|1333 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 44 Query Start:251 Query End:294 Subject Strand: NEGATIVE Subject Start: 1133 Subject End: 1176 ..........................................................................................................................................................................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagta........................... ..........................................................................................................................................................................................................................................................cctgtggctagtttcctaatttgctctttgattttcattgagta........................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:191 Query End:239 Subject Strand: NEGATIVE Subject Start: 1279 Subject End: 1326 ..............................................................................................................................................................................................atactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.................................................................................. ..............................................................................................................................................................................................atactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttgccgta.................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUUGUUUUAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUUAU ..........((((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...))))))... (-32.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUAAAACAAAAA ...((((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..)))))).......... (-45.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1062 80 31 209 160 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 986 100 51 212 163 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 983 80 31 174 125 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 983 80 31 174 125 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 983 80 31 174 125 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 907 60 11 219 170 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 773 110 64 93 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 717 110 64 93 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 716 110 64 93 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 712 59 11 199 152 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 638 110 64 93 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 637 110 64 93 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 590 59 28 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 571 110 64 196 152 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 515 43 8 199 164 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 486 43 11 228 196 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 450 54 11 173 123 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 427 43 7 196 161 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 410 46 11 231 197 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 380 75 32 231 182 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 983 80 31 59 10 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 983 80 31 59 10 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 983 80 31 59 10 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 905 80 31 56 7 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 899 110 61 50 1 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 880 100 51 55 6 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 776 110 64 72 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 775 110 63 48 1 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 773 110 64 86 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 748 100 51 76 27 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 745 110 64 52 8 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 716 110 64 53 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 710 110 64 82 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 698 110 64 86 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 670 110 64 86 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 640 59 11 82 35 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 640 59 11 147 100 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 579 110 75 36 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 567 110 70 41 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 456 59 15 141 98 smit:SMT_1911|3end_hypothetical_protein_1857840..1857990_POSITIVE