Origin IGS: gttgattccttttagagttcttccttttggaacttgtagaataacttcttcaaaacgacgagagtagctacttgcgatatggagaatcccgccaattccagaagagagaaatggagtttcagacagtttcttatcagtgaggctcagcgttttatcgttttgattcgtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttaannnnngtgtttctttctgctcccggtagggcacccccgccggcctggccgggtcctcccgccagggggcccgttcttgcgcaccccgtggccggccccaacgctgcccgaatgttctttcctgcgtttatcccctgttctgtggattaccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaccgcctctccccgcgcgttggccgattcattaatgcrgagcttgcatgcctgcaggtcgactctagaggatccccctgtgctaggatggtcacctagatcaggaaacagctatgaccccagtgtgctggaaagacgaatcaaaacgataaaacgctgagcctcactgataagaaactgtctgaaactccatttctctcttctggaattggcgggattctccatatcgcaagtagctactctcgtcgttttgaagaagttattctacaagttccaaaaggaagaactctaaaaggaatcaac Mask Tandem Repeat Region ================================================ gttgattccttttagagttcttccttttggaacttgtagaataacttcttcaaaacgacgagagtagctacttgcgatatggagaatcccgccaattccagaagagagaaatggagtttcagacagtttcttatcagtgaggctcagcgttttatcgttttgattcgtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Find is-nt database================================================ Query_seq: SMT_1558:SMT_1559|SMT_1558:SMT_1559:hypothetical protein:6-phosphofructokinase:<-<-:1544149..1544703 555 gttgattccttttagagttcttccttttggaacttgtagaataacttcttcaaaacgacgagagtagctacttgcgatatggagaatcccgccaattccagaagagagaaatggagtttcagacagtttcttatcagtgaggctcagcgttttatcgttttgattcgtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1558:SMT_1559|SMT_1558:SMT_1559:hypothetical protein:6-phosphofructokinase:<-<-:1544149..1544703 555 gttgattccttttagagttcttccttttggaacttgtagaataacttcttcaaaacgacgagagtagctacttgcgatatggagaatcccgccaattccagaagagagaaatggagtttcagacagtttcttatcagtgaggctcagcgttttatcgttttgattcgtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1558:SMT_1559|SMT_1558:SMT_1559:hypothetical protein:6-phosphofructokinase:<-<-:1544149..1544703 555 gttgattccttttagagttcttccttttggaacttgtagaataacttcttcaaaacgacgagagtagctacttgcgatatggagaatcccgccaattccagaagagagaaatggagtttcagacagtttcttatcagtgaggctcagcgttttatcgttttgattcgtctttccagcacactggggtcatagctgtttcctgatctaggtgaccatcctagcacagggggatcctctagagtcgacctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 1 Max: 168 Len: 168 Subject: UniRef90_Q97T57 Cluster: Hypothetical protein; n=3; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae HSP 1 e-value: 6.0E-22 bit: 105.0 Len: 168 Query Start:1 Query End:168 Subject Strand: null Subject Start: 95 Subject End: 150 T N Q N D K T L S L T D K K L S E T P F L S S G I G G I L H I A S S Y S R R F E E V I L Q V P K G R T L K G I N ................................................................................................................................................................................................................................................................................................................................................................................................... T N Q N D R T L S L T D K K L S E T P F L S S G I G G I L H I A S S Y S S R F E E V I L R L P K G R T L K G I N ................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 79 End: 189 .............................................................................. M E N P A N S R R E K W S F R Q F L I S E A Q R F I V L I R L S S T L G S .............................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 193 End: 336 ................................................................................................................................................................................................ M F P D L G D H P S T G G S S R V D L Q A C K L X I N E S A N A R G E A V A Y W A L F R F L A H ........................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 276 End: 395 ................................................................................................................................................................................................................................................................................... M G Q R A G R G G C V L G A L P L P R S L T R C A R S F G C G E R Y Q L T Q R R ................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 209 End: 403 ................................................................................................................................................................................................................ M T I L A Q G D P L E S T C R H A S S A L M N R P T R G E R R L R I G R S S A S S L T D S L R S V V R L R R A V S A H S ........................................................................................................................................................ Protein_Len: 44 Strand: + Start: 422 End: 553 ..................................................................................................................................................................................................................................................................................................................................................................................................................................... M N A G K N I R A A L G P A T G C A R T G P L A G G P G Q A G G G A L P G A E R N T X X .. Protein_Len: 60 Strand: + Start: 376 End: 552 ....................................................................................................................................................................................................................................................................................................................................................................................... M S S L K G G N T V I H R T G D K R R K E H S G S V G A G H G V R K N G P P G G R T R P G R R G C P T G S R K K H X X * ... Protein_Len: 40 Strand: - Start: 389 End: 508 .................................................................................................................................................................................................................................................................................................................................................................................................... L R Y Y P L G C F L P Y V C S L V N P C R Q P R G R P A C S R A G Q R S S G A M ............................................... Protein_Len: 54 Strand: - Start: 385 End: 546 ................................................................................................................................................................................................................................................................................................................................................................................................ E F A T I R Y D V S C P I F A P F F M R A A N P G A V P H A L V P G R A P P G P W A P P P A R G P A S L F M ......... Protein_Len: 60 Strand: - Start: 336 End: 536 ............................................................................................................................................................................................................................................................................................................................................... E A A A L P I L E S L P P L V T I W L V P S L R L F S C E P L T P A P W P T R L F P G G P P L V R G P R R P H G V P L M ................... Protein_Len: 43 Strand: - Start: 208 End: 336 ............................................................................................................................................................................................................... T V M R A C P S G R S D V Q L C A L E A N I F R G V R P S L R N R I P R E E A E E S M ........................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 147 End: 284 .................................................................................................................................................. R K I T K I R R E L V S P D Y S N G S R P S W G L V P P D E L T S R C A H L S X M L S D A M ............................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 15 End: 137 .............. L E E K Q F K Y F L K K L V V L T A V Q S I S F G A L E L L S F H L K L C N R I M .................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 49 Strand: - Start: 1 End: 147 N I G K L T R G K P V Q L I V E E F R R S Y S S A I H L I G G I G S S L F P T E S L K K D T L S M ........................................................................................................................................................................................................................................................................................................................................................................................................................ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 72 HP_score: -9.5 Tail_Score: -3.61398 Start: 480 End: 503 Full_Region: ccccgccggcctggc cgggtcctc ccgcca gggggcccg ttcttgcgcaccccg ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgggtcctcccgccagggggcccg.................................................... Find igs database================================================ Query_seq: SMT_1558:SMT_1559|SMT_1558:SMT_1559:hypothetical protein:6-phosphofructokinase:<-<-:1544149..1544703 555 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacacnnnnnttaa Intra-Species Hit: Count: 27 Min: 246 Max: 546 Len: 301 Subject: smit_SMT_1558_SMT_1559|hypothetical protein:6- phosphofructokinase|NEGATIVE:NEGATIVE|[1544149, 1544703]|555 HSP 1 e-value: 1.0E-168 bit: 594.0 Len: 301 Query Start:246 Query End:546 Subject Strand: POSITIVE Subject Start: 246 Subject End: 546 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacac......... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaacaggggataaacgcaggaaagaacattcgggcagcgttggggccggccacggggtgcgcaagaacgggccccctggcgggaggacccggccaggccggcgggggtgccctaccgggagcagaaagaaacac......... Subject: smit_SMT_1978_SMT_1979|hypothetical protein:possible cell surface protein|NEGATIVE:NEGATIVE|[1909657,1910371]|715 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 344 Subject End: 568 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1953_SMT_1954|hypothetical protein:6-phospho-beta- glucosidase|POSITIVE:POSITIVE|[1888168,1888687]|520 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 421 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1946_SMT_1947|sucrose-6-phosphate hydrolase:lysine decarboxylase|POSITIVE:NEGATIVE|[1881266,1882402]|1137 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 530 Subject End: 754 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1944_SMT_1945|hypothetical protein predicted by Glimmer/Critica:putative dihydrolipoamide S-acetyltransferase|NEGATIVE:POSITIVE|[1879585, 1880100]|516 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 91 Subject End: 315 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1895_SMT_1896|hypothetical protein predicted by Glimmer/Critica:lysine decarboxylase|POSITIVE:NEGATIVE|[1847463,1848162]|700 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 115 Subject End: 339 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1887_SMT_1888|LicC protein:K02026 multiple sugar transport system permease protein|POSITIVE:POSITIVE|[1841801,1842227]|427 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 43 Subject End: 267 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1884_SMT_1885|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1839299,1839919]|621 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 344 Subject End: 568 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1857_SMT_1858|hypothetical protein:K03497 chromosome partitioning protein, ParB family|POSITIVE:NEGATIVE|[1821206,1821776]|571 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 130 Subject End: 354 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1851_SMT_1852|ABC transporter, permease protein, putative:1,4-alpha-glucan branching enzyme|NEGATIVE:NEGATIVE|[1815812,1816556]|745 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 484 Subject End: 708 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 716 Subject End: 940 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1685_SMT_1686|phenylalanyl-tRNA synthetase alpha chain:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1668936,1670314]|1379 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 1024 Subject End: 1248 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_478_SMT_479|hypothetical protein predicted by Glimmer/Critica:K03308 neurotransmitter:Na+ symporter, NSS family|POSITIVE:NEGATIVE|[415318,415693]|376 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 270 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_303_SMT_304|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[245819,246719]|901 HSP 1 e-value: 1.0E-100 bit: 366.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 648 Subject End: 872 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... HSP 2 e-value: 8.0E-14 bit: 80.0 Len: 46 Query Start:246 Query End:291 Subject Strand: POSITIVE Subject Start: 174 Subject End: 219 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcgg........................................................................................................................................................................................................................................................................ .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcatttatgaatcggccaacgcgcgg........................................................................................................................................................................................................................................................................ Subject: smit_SMT_1885_SMT_1886|hypothetical protein predicted by Glimmer/Critica:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:POSITIVE|[1840148,1841123]|976 HSP 1 e-value: 3.0E-99 bit: 364.0 Len: 211 Query Start:246 Query End:456 Subject Strand: NEGATIVE Subject Start: 510 Subject End: 721 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggg................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttggg................................................................................................... Subject: smit_SMT_1845_SMT_1846|K01191 alpha-mannosidase:acyl-ACP thioesterase, putative|POSITIVE:POSITIVE|[1810496,1811549]|1054 HSP 1 e-value: 2.0E-97 bit: 358.0 Len: 223 Query Start:246 Query End:468 Subject Strand: NEGATIVE Subject Start: 430 Subject End: 654 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcgg-ttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggakaggcgsyttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_1873_SMT_1874|K02006 cobalt transport system ATP-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1832412,1832712]|301 HSP 1 e-value: 4.0E-95 bit: 350.0 Len: 223 Query Start:246 Query End:468 Subject Strand: POSITIVE Subject Start: 54 Subject End: 278 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcagggaagaacattctggcagcgttgggtcctggccacggg....................................................................................... Subject: smit_SMT_2024_SMT_2025|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:NEGATIVE|[1940751,1941084]|334 HSP 1 e-value: 2.0E-94 bit: 348.0 Len: 211 Query Start:246 Query End:456 Subject Strand: POSITIVE Subject Start: 43 Subject End: 254 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggg................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcagggg-gatacgcaggaaagaacattcgggcagcgttggg................................................................................................... Subject: smit_SMT_1966_SMT_1967|DNA polymerase III alpha subunit:dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein|POSITIVE:NEGATIVE|[1898389,1899587]|1199 HSP 1 e-value: 9.0E-90 bit: 332.0 Len: 206 Query Start:263 Query End:468 Subject Strand: POSITIVE Subject Start: 227 Subject End: 434 ......................................................................................................................................................................................................................................................................tcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacattcgggcagcgttggggcc-ggccacggg....................................................................................... ......................................................................................................................................................................................................................................................................tctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggat-aacgcaggaaagaacattcgggcagcgttgggtcctggccacggg....................................................................................... HSP 2 e-value: 1.0E-61 bit: 238.0 Len: 129 Query Start:246 Query End:374 Subject Strand: POSITIVE Subject Start: 54 Subject End: 183 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcgg..................................................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcgg..................................................................................................................................................................................... Subject: smit_SMT_779_SMT_780|ribonuclease BN, putative:peptidase family U32|NEGATIVE:NEGATIVE|[688621,688841]|221 HSP 1 e-value: 1.0E-79 bit: 298.0 Len: 159 Query Start:246 Query End:404 Subject Strand: POSITIVE Subject Start: 56 Subject End: 215 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggt....................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggt....................................................................................................................................................... Subject: smit_SMT_1967_SMT_1968|dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein:transcription-repair coupling factor|NEGATIVE:NEGATIVE|[1899774,1900040]|267 HSP 1 e-value: 2.0E-72 bit: 274.0 Len: 147 Query Start:246 Query End:392 Subject Strand: POSITIVE Subject Start: 56 Subject End: 203 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaagg................................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaagg................................................................................................................................................................... Subject: smit_SMT_1981_SMT_1982|K03696 ATP-dependent Clp protease ATP-binding subunit ClpC:conserved hypothetical protein|POSITIVE:POSITIVE|[1912929,1913175]|247 HSP 1 e-value: 8.0E-72 bit: 272.0 Len: 146 Query Start:246 Query End:391 Subject Strand: POSITIVE Subject Start: 43 Subject End: 189 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaag.................................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaag.................................................................................................................................................................... Subject: smit_SMT_1690_SMT_1691|K06148 ATP-binding cassette, subfamily C, bacterial:putative deoxyribonuclease|NEGATIVE:POSITIVE|[1674870, 1675117]|248 HSP 1 e-value: 1.0E-67 bit: 258.0 Len: 139 Query Start:246 Query End:384 Subject Strand: POSITIVE Subject Start: 56 Subject End: 195 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctca........................................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctca........................................................................................................................................................................... Subject: smit_SMT_1926_SMT_1927|mevalonate kinase:cell division protein FtsH|POSITIVE:NEGATIVE|[1868123,1868497]|375 HSP 1 e-value: 5.0E-67 bit: 256.0 Len: 138 Query Start:246 Query End:383 Subject Strand: POSITIVE Subject Start: 43 Subject End: 181 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc............................................................................................................................................................................ .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc............................................................................................................................................................................ HSP 2 e-value: 5.0E-55 bit: 217.0 Len: 118 Query Start:246 Query End:363 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 322 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct................................................................................................................................................................................................ .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggct................................................................................................................................................................................................ Subject: smit_SMT_2016_SMT_2017|tyrosine recombinase:exonuclease RexA|NEGATIVE:NEGATIVE|[1933516,1935951]|2436 HSP 1 e-value: 3.0E-62 bit: 240.0 Len: 130 Query Start:246 Query End:375 Subject Strand: POSITIVE Subject Start: 120 Subject End: 250 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt.................................................................................................................................................................................... .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggt.................................................................................................................................................................................... Subject: smit_SMT_325_SMT_326|K02029 polar amino acid transport system permease protein:K02029 polar amino acid transport system permease protein|NEGATIVE:NEGATIVE|[263114,263306]|193 HSP 1 e-value: 3.0E-56 bit: 221.0 Len: 120 Query Start:246 Query End:365 Subject Strand: NEGATIVE Subject Start: 36 Subject End: 156 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc.............................................................................................................................................................................................. .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgc.............................................................................................................................................................................................. Subject: smit_SMT_1971_SMT_1972|hypothetical protein predicted by Glimmer/Critica:uncharacterized conserved phage related protein|POSITIVE:POSITIVE|[1903587,1903801]|215 HSP 1 e-value: 2.0E-54 bit: 215.0 Len: 121 Query Start:246 Query End:366 Subject Strand: POSITIVE Subject Start: 38 Subject End: 159 .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctcygcattaatgaatcggccaacgcgcggggagaggcggtt-gcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg............................................................................................................................................................................................. .....................................................................................................................................................................................................................................................cctgcaggcatgcaagctctgcattaatgaatcggccaacgcgcggggagaagcggtttgcgtattgggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcg............................................................................................................................................................................................. Inter-species Hit: Count: 5 Min: 312 Max: 441 Len: 130 Subject: NC_002127_pOSAK1_03_pOSAK1_01|hypothetical protein:plasmid mobilization|NEGATIVE:POSITIVE|2389, 412 {([2389,3306]), ([1,412])} (circular)|1330 HSP 1 e-value: 1.0E-46 bit: 189.0 Len: 130 Query Start:312 Query End:441 Subject Strand: NEGATIVE Subject Start: 678 Subject End: 807 .......................................................................................................................................................................................................................................................................................................................ggcgctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacat.................................................................................................................. .......................................................................................................................................................................................................................................................................................................................ggcgctcttccgcttcctcgctcactgactcgctacgctcggtcgttcgactgcggcgagcggtgtcagctcactcaaaggcggtaatacggttatccacagaatcaggggataaa-gccggaaagaacat.................................................................................................................. Subject: NC_008121_YPA_PCP0009_YPA_PCP0003|replication regulatory protein:pesticin|POSITIVE:NEGATIVE|[4293,5987]|1695 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 127 Query Start:315 Query End:441 Subject Strand: POSITIVE Subject Start: 240 Subject End: 366 ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacat.................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtgtctgctcactcaaaagcggtgatactgttatccacacaatcaggggat-aacgccggaaagaacat.................................................................................................................. Subject: NC_008119_YPN_PCP0009_YPN_PCP0003|replication regulatory protein:pesticin|POSITIVE:NEGATIVE|[4281,5975]|1695 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 127 Query Start:315 Query End:441 Subject Strand: POSITIVE Subject Start: 240 Subject End: 366 ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacat.................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtgtctgctcactcaaaagcggtgatactgttatccacacaatcaggggat-aacgccggaaagaacat.................................................................................................................. Subject: NC_005816_YP_pPCP03_YP_pPCP04|putative replication regulatory protein:hypothetical protein|POSITIVE:POSITIVE|[3120,3485]|366 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 127 Query Start:315 Query End:441 Subject Strand: POSITIVE Subject Start: 240 Subject End: 366 ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacat.................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtgtctgctcactcaaaagcggtgatactgttatccacacaatcaggggat-aacgccggaaagaacat.................................................................................................................. Subject: NC_003132_YPPCP1.03_YPPCP1.04|putative replication regulatory protein:pesticin immunity protein|POSITIVE:POSITIVE|[3120,4354]|1235 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 127 Query Start:315 Query End:441 Subject Strand: POSITIVE Subject Start: 240 Subject End: 366 ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggtaatccacagaa-caggggataaacgcaggaaagaacat.................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................gctcttccgcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtgtctgctcactcaaaagcggtgatactgttatccacacaatcaggggat-aacgccggaaagaacat.................................................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGCGCUCUUCCGCUUCCUCGCUCACUGACUCGCUGCGCUCGGUCGUUCGGCUGCGGCGAGCGGUAUCAGCUCACUCAAAGGCGGUAAUACGGUAAUCCACAGAACAGGGGAUAAACGCAGGAAAGAACAU ...(.((((((((.(((((....((((.((((((((((.(((....))))).)))))))))))).((.(((........)))........((....))...))...))))).....)).)).)))).).. (-39.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUGUUCUUUCCUGCGUUUAUCCCCUGUUCUGUGGAUUACCGUAUUACCGCCUUUGAGUGAGCUGAUACCGCUCGCCGCAGCCGAACGACCGAGCGCAGCGAGUCAGUGAGCGAGGAAGCGGAAGAGCGCC ..(((((....((((...((((.(......).))))...))))...((((.(((..((..((((.....((((((.((.((((......)).)))).))))))))))..))..))).)))).)))))... (-42.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1196 50 1 169 120 smit:SMT_2005|5end_pullulanase,_type_I_1926289..1926519_NEGATIVE 1044 44 1 231 188 smit:SMT_304|5end_hypothetical_protein_246580..246810_POSITIVE 474 70 24 210 166 smit:SMT_1982|5end_conserved_hypothetical_protein_1913036..1913266_POSITIVE 474 70 24 198 154 smit:SMT_1691|5end_putative_deoxyribonuclease_1674978..1675208_POSITIVE 474 70 24 223 179 smit:SMT_1156|5end_K07485_transposase_1099938..1100168_POSITIVE 441 48 1 135 76 smit:SMT_338|5end_heat-inducible_transcription_repressor_HrcA_276825..277055_POSITIVE 428 57 12 135 88 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 410 70 22 82 25 smit:SMT_370|5end_acetyltransferase,_GNAT_family_304688..304918_POSITIVE 393 60 12 224 172 smit:SMT_1543|5end_diphosphomevalonate_decarboxylase_1528024..1528254_NEGATIVE 381 70 22 225 168 smit:SMT_976|5end_hypothetical_protein_925183..925413_NEGATIVE 371 85 43 123 73 smit:SMT_1083|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1020829..1021059_POSITIVE 369 57 12 193 144 smit:SMT_1970|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1902023..1902253_POSITIVE 366 69 24 183 126 smit:SMT_331|5end_endo-beta-N-acetylglucosaminidase_266416..266646_POSITIVE 365 55 12 47 1 smit:SMT_1719|5end_DNA_mismatch_repair_protein_1706842..1707072_NEGATIVE 363 60 11 205 143 smit:SMT_1823|5end_GTP-binding_protein_1794982..1795212_POSITIVE 359 18 1 231 214 smit:SMT_1967|5end_dicarboxylate/amino_acid:cation_(Na+_or_H+)_symporter_(DAACS)_family_protein_1899683..1899913_NEGATIVE 359 18 1 231 214 smit:SMT_1690|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1674779..1675009_NEGATIVE 359 70 21 176 120 smit:SMT_1454|5end_cytidine_deaminase_1437886..1438116_NEGATIVE 359 18 1 231 214 smit:SMT_779|5end_ribonuclease_BN,_putative_688530..688760_NEGATIVE 358 71 31 228 180 smit:SMT_1838|5end_response_regulator_1805400..1805630_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1223 60 11 51 2 smit:SMT_780|3end_peptidase_family_U32_688752..688902_NEGATIVE 508 81 56 26 1 smit:SMT_1968|3end_transcription-repair_coupling_factor_1899951..1900101_NEGATIVE 500 130 95 39 4 smit:SMT_1874|3end_hypothetical_protein_1832623..1832773_NEGATIVE 423 57 12 84 25 smit:SMT_1941|3end_hypothetical_protein_1877663..1877813_POSITIVE 373 48 1 132 77 smit:SMT_977|3end_conserved_hypothetical_protein,_Rrf2_family_protein_925252..925402_NEGATIVE 372 60 12 52 1 smit:SMT_1946|3end_sucrose-6-phosphate_hydrolase_1881205..1881355_POSITIVE 371 85 43 91 41 smit:SMT_1082|3end_Cof_family_protein_1020877..1021027_POSITIVE 360 64 26 63 20 smit:SMT_2057|3end_cell_division_protein_FtsH_1966897..1967047_NEGATIVE 353 70 23 69 11 smit:SMT_1630|3end_hypothetical_protein_1618141..1618291_POSITIVE 350 48 1 64 1 smit:SMT_1750|3end_anthranilate_phosphoribosyltransferase_1729095..1729245_POSITIVE 347 71 31 72 21 smit:SMT_1938|3end_zinc_metalloprotease_ZmpB,_putative_1876230..1876380_POSITIVE 347 60 11 147 104 smit:SMT_1202|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1163945..1164095_NEGATIVE 345 69 26 94 44 smit:SMT_914|3end_sucrose-6-phosphate_hydrolase_867673..867823_POSITIVE 344 55 12 150 110 smit:SMT_1778|3end_ATP-dependent_RNA_helicase_1753611..1753761_NEGATIVE 337 98 51 48 5 smit:SMT_1353|3end_GTP-binding_protein_1330690..1330840_NEGATIVE 337 74 32 46 8 smit:SMT_785|3end_hypothetical_protein_696307..696457_NEGATIVE 336 63 31 78 36 smit:SMT_481|3end_K03308_neurotransmitter:Na+_symporter,_NSS_family_417641..417791_NEGATIVE 333 71 35 145 100 smit:SMT_988|3end_N-acetylneuraminate_lyase_932242..932392_NEGATIVE 331 76 37 63 18 smit:SMT_1951|3end_ABC_transporter,_ATP-binding_protein_1885141..1885291_NEGATIVE 329 67 24 100 51 smit:SMT_2111|3end_hypothetical_protein_predicted_by_Glimmer/Critica_2000036..2000186_POSITIVE