Origin IGS: ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aacaccaacagataaaagctcatgaaatctacttttcagatgattcatgagctttttaaatttccataatatataacgatttaaagttatactaaatgaaaatcaaaaagcaaactaggaagctagtcgcaagctgtgctgaagtacagtgaggcgacattgacgtagtttgaagagattttcgaaaagtattaattgaaacaagaaaacgacaataaacttctaacatgataaaaacgcatcgtatcaggtgttcaaaaccttgatacaatgcgctttatagtctataagattagttgtcttttcttctcaaattgagttttgcctagacttttcaacc Mask Tandem Repeat Region ================================================ ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Find is-nt database================================================ Query_seq: SMT_1554:SMT_1555|SMT_1554:SMT_1555:isoleucyl-tRNA synthetase:hypothetical protein:-><-:1539973..1540312 340 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1554:SMT_1555|SMT_1554:SMT_1555:isoleucyl-tRNA synthetase:hypothetical protein:-><-:1539973..1540312 340 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1554:SMT_1555|SMT_1554:SMT_1555:isoleucyl-tRNA synthetase:hypothetical protein:-><-:1539973..1540312 340 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 125 End: 223 ............................................................................................................................ M V V F L F Q L I L F E N L F K L R Q C R L T V L Q H S L R L A S ..................................................................................................................... Protein_Len: 59 Strand: + Start: 70 End: 246 ..................................................................... M Y Q G F E H L I R C V F I M L E V Y C R F L V S I N T F R K S L Q T T S M S P H C T S A Q L A T S F L V C F L I F I .............................................................................................. Protein_Len: 30 Strand: + Start: 251 End: 340 .......................................................................................................................................................................................................................................................... M T L N R Y I L W K F K K L M N H L K S R F H E L L S V G V ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 50 End: 79 .................................................CTTGATACAATGCGCTTTATAGTCTATAAG..................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 79 HP_score: -8.0 Tail_Score: -4.04318 Start: 65 End: 104 Full_Region: tctaacatgataaaa acgcatcgtatcaggtgtt caa aaccttgatacaatgcgc tttatagtctataag ................................................................acgcatcgtatcaggtgttcaaaaccttgatacaatgcgc............................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -11.5 Tail_Score: -4.98436 Start: 66 End: 103 Full_Region: TTATAGACTATAAAG CGCATTGTATCAAGGTTT TGA ACACCTGATACGATGCG TTTTTATCATGTTAG .................................................................CGCATTGTATCAAGGTTTTGAACACCTGATACGATGCG............................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 87 HP_score: -11.5 Tail_Score: -3.02109 Start: 66 End: 103 Full_Region: ctaacatgataaaaa cgcatcgtatcaggtgtt caa aaccttgatacaatgcg ctttatagtctataa .................................................................cgcatcgtatcaggtgttcaaaaccttgatacaatgcg............................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SMT_1554:SMT_1555|SMT_1554:SMT_1555:isoleucyl-tRNA synthetase:hypothetical protein:-><-:1539973..1540312 340 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Intra-Species Hit: Count: 19 Min: 1 Max: 340 Len: 340 Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 0.0 bit: 674.0 Len: 340 Query Start:1 Query End:340 Subject Strand: POSITIVE Subject Start: 1 Subject End: 340 ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt ggttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgtttttatcatgttagaagtttattgtcgttttcttgtttcaattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataactttaaatcgttatatattatggaaatttaaaaagctcatgaatcatctgaaaagtagatttcatgagcttttatctgttggtgtt Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 111 Query Start:144 Query End:254 Subject Strand: POSITIVE Subject Start: 2 Subject End: 113 ...............................................................................................................................................aattaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ...............................................................................................................................................aattaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 105 Query Start:150 Query End:254 Subject Strand: POSITIVE Subject Start: 1 Subject End: 105 .....................................................................................................................................................tacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .....................................................................................................................................................tactcttcgaaaatctcttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 104 Query Start:149 Query End:252 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtat........................................................................................ Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 105 Query Start:150 Query End:254 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 154 .....................................................................................................................................................tacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .....................................................................................................................................................tactcttcgaaaatctcttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 109 Query Start:146 Query End:254 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 128 .................................................................................................................................................ttaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 108 Query Start:147 Query End:254 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 219 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 113 Query Start:146 Query End:258 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 206 .................................................................................................................................................ttaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataacttt.................................................................................. .................................................................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataacttt.................................................................................. Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 105 Query Start:150 Query End:254 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 227 .....................................................................................................................................................tacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .....................................................................................................................................................tactcttcgaaaatctcttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 108 Query Start:147 Query End:254 Subject Strand: POSITIVE Subject Start: 222 Subject End: 330 ..................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ..................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 109 Query Start:146 Query End:254 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 133 .................................................................................................................................................ttaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataa...................................................................................... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 9.0E-13 bit: 75.8 Len: 109 Query Start:146 Query End:254 Subject Strand: POSITIVE Subject Start: 149 Subject End: 258 .................................................................................................................................................ttaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 100 Query Start:147 Query End:246 Subject Strand: POSITIVE Subject Start: 12 Subject End: 112 ..................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatt.............................................................................................. ..................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatt.............................................................................................. Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 108 Query Start:147 Query End:254 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 181 ..................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ..................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 100 Query Start:147 Query End:246 Subject Strand: POSITIVE Subject Start: 12 Subject End: 112 ..................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatt.............................................................................................. ..................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatt.............................................................................................. Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 100 Query Start:147 Query End:246 Subject Strand: NEGATIVE Subject Start: 3 Subject End: 103 ..................................................................................................................................................taatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatt.............................................................................................. ..................................................................................................................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatt.............................................................................................. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 5.0E-11 bit: 69.9 Len: 110 Query Start:145 Query End:254 Subject Strand: POSITIVE Subject Start: 100 Subject End: 210 ................................................................................................................................................attaatacttttcgaaaatctc-ttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ................................................................................................................................................attaatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:205 Query End:254 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 115 ............................................................................................................................................................................................................cagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ............................................................................................................................................................................................................cagcctgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:140 Query End:180 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 272 ...........................................................................................................................................tttcaattaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ...........................................................................................................................................tttcagttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:215 Query End:254 Subject Strand: NEGATIVE Subject Start: 157 Subject End: 196 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: NEGATIVE Subject Start: 314 Subject End: 356 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaaaccgcgtcaacgtcgcct....................................................................................................................................................... Inter-species Hit: Count: 49 Min: 3 Max: 257 Len: 255 Subject: NC_008533_SPD_1471_SPD_1472|hypothetical protein:isoleucyl-tRNA synthetase|NEGATIVE:NEGATIVE|[1487549,1487995]|447 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 106 Query Start:3 Query End:108 Subject Strand: NEGATIVE Subject Start: 340 Subject End: 445 ..ttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgttttt........................................................................................................................................................................................................................................ ..ttgaaaagtctaggcaaaattcaatttgagaagaaaagacaactaattttatagtctattaaacgcattgtatcacgtttttgaatacctgatatgatgcgttttt........................................................................................................................................................................................................................................ Subject: NC_003098_spr1501_spr1502|hypothetical protein:isoleucyl-tRNA synthetase|NEGATIVE:NEGATIVE|[1479898,1480464]|567 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 106 Query Start:3 Query End:108 Subject Strand: NEGATIVE Subject Start: 460 Subject End: 565 ..ttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgttttt........................................................................................................................................................................................................................................ ..ttgaaaagtctaggcaaaattcaatttgagaagaaaagacaactaattttatagtctattaaacgcattgtatcacgtttttgaatacctgatatgatgcgttttt........................................................................................................................................................................................................................................ Subject: NC_003028_SP_1658_SP_1659|hypothetical protein:isoleucyl-tRNA synthetase|NEGATIVE:NEGATIVE|[1558798,1559244]|447 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 106 Query Start:3 Query End:108 Subject Strand: NEGATIVE Subject Start: 340 Subject End: 445 ..ttgaaaagtctaggcaaaactcaatttgagaagaaaagacaactaatcttatagactataaagcgcattgtatcaaggttttgaacacctgatacgatgcgttttt........................................................................................................................................................................................................................................ ..ttgaaaagtctaggcaaaattcaatttgagaagaaaagacaactaattttatagtctattaaacgcattgtatcacgtttttgaatacctgatatgatgcgttttt........................................................................................................................................................................................................................................ Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 6.0E-23 bit: 109.0 Len: 103 Query Start:149 Query End:251 Subject Strand: POSITIVE Subject Start: 47 Subject End: 149 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagta......................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta......................................................................................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 109 Query Start:144 Query End:252 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 118 ...............................................................................................................................................aattaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ ...............................................................................................................................................aatttatactcttcgaaaatctcttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat........................................................................................ Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 104 Query Start:149 Query End:252 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat........................................................................................ Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 104 Query Start:149 Query End:252 Subject Strand: POSITIVE Subject Start: 135 Subject End: 238 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ ....................................................................................................................................................atactcttcgaaaatcttttcaaatcacgtcagcgtcgccttaccgtactcaagtacagcctgaggctagcttcttagtttgctttttgattttcatttagtat........................................................................................ Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 109 Query Start:146 Query End:254 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 316 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactctttgaaaatctcttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 109 Query Start:146 Query End:254 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 316 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactctttgaaaatctcttcaaaccacgtcagctttgccttgccgtactcaagtacagcctgcgactcgcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_003028_SP_1845_SP_1847|exodeoxyribonuclease:xanthine phosphoribosyltransferase|POSITIVE:POSITIVE|[1754015, 1755276]|1262 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:216 Query End:256 Subject Strand: POSITIVE Subject Start: 607 Subject End: 647 .......................................................................................................................................................................................................................tagcttcctagtttgctttttgattttcatttagtataact.................................................................................... .......................................................................................................................................................................................................................tagcttcctagtttgctctttgattttcatttagtataact.................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: POSITIVE Subject Start: 493 Subject End: 535 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaagccacgtcaacgtcgcct....................................................................................................................................................... Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 109 Query Start:146 Query End:254 Subject Strand: NEGATIVE Subject Start: 218 Subject End: 326 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgtacttcagcacagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................ttaatactctttgaaaatctcttcaaaccacgtcagctttgctttaccgtactcaagtacagcctgcggctcgcttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_008533_SPD_1626_SPD_1628|exodeoxyribonuclease III:xanthine phosphoribosyltransferase|POSITIVE:POSITIVE|[1641580, 1642850]|1271 HSP 1 e-value: 5.0E-11 bit: 69.9 Len: 39 Query Start:216 Query End:254 Subject Strand: POSITIVE Subject Start: 607 Subject End: 645 .......................................................................................................................................................................................................................tagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .......................................................................................................................................................................................................................tagcttcctagtttgctctttgattttcatttagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: POSITIVE Subject Start: 493 Subject End: 535 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaagccacgtcaacgtcgcct....................................................................................................................................................... Subject: NC_003098_spr1661_spr1662|hypothetical protein:xanthine phosphoribosyltransferase|POSITIVE:POSITIVE|[1634443, 1635319]|877 HSP 1 e-value: 5.0E-11 bit: 69.9 Len: 39 Query Start:216 Query End:254 Subject Strand: POSITIVE Subject Start: 213 Subject End: 251 .......................................................................................................................................................................................................................tagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .......................................................................................................................................................................................................................tagcttcctagtttgctctttgattttcatttagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: POSITIVE Subject Start: 99 Subject End: 141 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaagccacgtcaacgtcgcct....................................................................................................................................................... Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:205 Query End:254 Subject Strand: POSITIVE Subject Start: 106 Subject End: 155 ............................................................................................................................................................................................................cagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ............................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:205 Query End:254 Subject Strand: POSITIVE Subject Start: 106 Subject End: 155 ............................................................................................................................................................................................................cagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ............................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 50 Query Start:205 Query End:254 Subject Strand: POSITIVE Subject Start: 106 Subject End: 155 ............................................................................................................................................................................................................cagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ............................................................................................................................................................................................................cagcttgcggctagctttctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 1 Subject End: 44 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_008533_SPD_0353_SPD_0355|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[356986,357757]|772 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 316 Subject End: 360 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: POSITIVE Subject Start: 243 Subject End: 277 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 275 Subject End: 319 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: POSITIVE Subject Start: 120 Subject End: 162 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_003098_spr1922_spr1923|Maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[1905655,1905945]|291 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:145 Query End:189 Subject Strand: NEGATIVE Subject Start: 245 Subject End: 289 ................................................................................................................................................attaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ................................................................................................................................................attaatacttttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 177 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgcactttgattttcattgagtataa...................................................................................... Subject: NC_003098_spr0696_spr0697|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[698465,698791]|327 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 85 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: NEGATIVE Subject Start: 207 Subject End: 241 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 275 Subject End: 319 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: POSITIVE Subject Start: 120 Subject End: 162 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_003028_SP_1228_SP_1229|A/G-specific adenine glycosylase:formate--tetrahydrofolate ligase|NEGATIVE:NEGATIVE|[1161361,1161717]|357 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 118 Subject End: 162 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 32 Query Start:149 Query End:180 Subject Strand: NEGATIVE Subject Start: 240 Subject End: 271 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 85 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: NEGATIVE Subject Start: 342 Subject End: 376 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003028_SP_0387_SP_0389|DNA-binding response regulator:hypothetical protein|POSITIVE:POSITIVE|[367533,368450]|918 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 462 Subject End: 506 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: POSITIVE Subject Start: 389 Subject End: 423 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_008533_SPD_1121_SPD_1122|hypothetical protein:DNA processing protein DprA, putative|NEGATIVE:NEGATIVE|[1152536,1153424]|889 HSP 1 e-value: 3.0E-9 bit: 63.9 Len: 32 Query Start:149 Query End:180 Subject Strand: NEGATIVE Subject Start: 221 Subject End: 252 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:147 Query End:180 Subject Strand: NEGATIVE Subject Start: 704 Subject End: 737 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ..................................................................................................................................................taatactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 3 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:215 Query End:254 Subject Strand: NEGATIVE Subject Start: 575 Subject End: 614 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ......................................................................................................................................................................................................................ctagcttcctagtttgcgctttgattttcattgagtataa...................................................................................... Subject: NC_008533_SPD_0652_SPD_0653|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[671147,671413]|267 HSP 1 e-value: 3.0E-9 bit: 63.9 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 55 Subject End: 98 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaactgcgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 165 Subject End: 209 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_003098_spr0659_spr0660|ABC transporter substrate-binding protein - branched chain amino acid transport:ABC transporter membrane-spanning permease - branched chain amino acid transport|POSITIVE:POSITIVE|[663616,663873]|258 HSP 1 e-value: 3.0E-9 bit: 63.9 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 55 Subject End: 98 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaactgcgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 165 Subject End: 209 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_003028_SP_0749_SP_0750|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[709061,709327]|267 HSP 1 e-value: 3.0E-9 bit: 63.9 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 55 Subject End: 98 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaactgcgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: POSITIVE Subject Start: 165 Subject End: 209 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_008533_SPD_1458_SPD_1459|GTP pyrophosphokinase:metallo-beta-lactamase superfamily protein|NEGATIVE:POSITIVE|[1472689,1473682]|994 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 294 Subject End: 336 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcatttagtat........................................................................................ HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:204 Query End:254 Subject Strand: NEGATIVE Subject Start: 852 Subject End: 902 ...........................................................................................................................................................................................................acagcttgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ...........................................................................................................................................................................................................acagcctgcggctagctttctagtttgctctttgattttcattgagtataa...................................................................................... HSP 3 e-value: 8.0E-7 bit: 56.0 Len: 36 Query Start:147 Query End:182 Subject Strand: NEGATIVE Subject Start: 933 Subject End: 968 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaat.............................................................................................................................................................. ..................................................................................................................................................taatactcttcgaaaatctcttcaaactgcgtcaat.............................................................................................................................................................. Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 377 Subject End: 419 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcggctagcttcctagtttgctctttgattttcattgagtat........................................................................................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 48 Query Start:149 Query End:196 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 527 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcctcactgta................................................................................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcagcgtcgccttactgta................................................................................................................................................ Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 39 Query Start:216 Query End:254 Subject Strand: POSITIVE Subject Start: 178 Subject End: 216 .......................................................................................................................................................................................................................tagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .......................................................................................................................................................................................................................tagcttcctagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 44 Query Start:146 Query End:189 Subject Strand: POSITIVE Subject Start: 15 Subject End: 58 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_003028_SP_0624_SP_0626|hypothetical protein:branched-chain amino acid transport system II carrier protein|POSITIVE:POSITIVE|[592218,592819]|602 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 35 Query Start:212 Query End:246 Subject Strand: NEGATIVE Subject Start: 3 Subject End: 37 ...................................................................................................................................................................................................................cgactagcttcctagtttgctttttgattttcatt.............................................................................................. ...................................................................................................................................................................................................................cgactagcttcctagtttgctctttgattttcatt.............................................................................................. HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:147 Query End:189 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 148 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ..................................................................................................................................................taatactcttcgaaaatctcttcaaaccacgtcagcgtcgcct....................................................................................................................................................... Subject: NC_008533_SPD_0173_SPD_0174|MccC family protein:membrnae protein, putative|NEGATIVE:NEGATIVE|[177190,177443]|254 HSP 1 e-value: 5.0E-8 bit: 60.0 Len: 42 Query Start:215 Query End:256 Subject Strand: POSITIVE Subject Start: 161 Subject End: 202 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataact.................................................................................... ......................................................................................................................................................................................................................ctagcttcctagtttgctctttgattttcattgaatataact.................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: POSITIVE Subject Start: 83 Subject End: 117 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003098_spr1961_spr1962|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1948666,1949303]|638 HSP 1 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:147 Query End:180 Subject Strand: NEGATIVE Subject Start: 600 Subject End: 633 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ..................................................................................................................................................taatactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:215 Query End:254 Subject Strand: NEGATIVE Subject Start: 435 Subject End: 474 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtataa...................................................................................... Subject: NC_003098_spr1143_spr1144|hypothetical protein:DNA processing Smf protein|NEGATIVE:NEGATIVE|[1145384,1145893]|510 HSP 1 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:147 Query End:180 Subject Strand: NEGATIVE Subject Start: 325 Subject End: 358 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ..................................................................................................................................................taatactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:215 Query End:254 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 235 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ......................................................................................................................................................................................................................ctagcttcctagtttgcgctttgattttcattgagtataa...................................................................................... Subject: NC_003098_spr0168_spr0169|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[177190,177443]|254 HSP 1 e-value: 5.0E-8 bit: 60.0 Len: 42 Query Start:215 Query End:256 Subject Strand: POSITIVE Subject Start: 161 Subject End: 202 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataact.................................................................................... ......................................................................................................................................................................................................................ctagcttcctagtttgctctttgattttcattgaatataact.................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: POSITIVE Subject Start: 83 Subject End: 117 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003028_SP_1265_SP_1266|hypothetical protein:DNA processing protein DprA, putative|NEGATIVE:NEGATIVE|[1198773,1199283]|511 HSP 1 e-value: 5.0E-8 bit: 60.0 Len: 34 Query Start:147 Query End:180 Subject Strand: NEGATIVE Subject Start: 326 Subject End: 359 ..................................................................................................................................................taatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ..................................................................................................................................................taatactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:215 Query End:254 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 236 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataa...................................................................................... ......................................................................................................................................................................................................................ctagcttcctagtttgcgctttgattttcattgagtataa...................................................................................... Subject: NC_008533_SPD_0729_SPD_0730|hemolysin-related protein:purine nucleoside phosphorylase|POSITIVE:POSITIVE|[743379,744035]|657 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 248 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 141 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtat........................................................................................ Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: POSITIVE Subject Start: 67 Subject End: 107 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:215 Query End:257 Subject Strand: POSITIVE Subject Start: 316 Subject End: 358 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataactt................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtattactt................................................................................... Subject: NC_003098_spr0737_spr0738|Conserved hypothetical protein, truncation:Purine nucleoside phosphorylase (inosine phosphorylase)|POSITIVE:POSITIVE|[735848,736504]|657 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 248 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 141 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcggctagtttcctagtttgctctttgattttcattgagtat........................................................................................ Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: POSITIVE Subject Start: 67 Subject End: 107 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:215 Query End:257 Subject Strand: POSITIVE Subject Start: 316 Subject End: 358 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataactt................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtattactt................................................................................... Subject: NC_003028_SP_2112_SP_2113|maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[2026318,2026608]|291 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 177 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcctagtttgcactttgattttcattgagtataa...................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 36 Query Start:145 Query End:180 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 289 ................................................................................................................................................attaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ................................................................................................................................................attaatactcttcgaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003028_SP_1706_SP_1707|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1611668,1611851]|184 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:208 Query End:252 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 76 ...............................................................................................................................................................................................................cttgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ ...............................................................................................................................................................................................................cttgcggctagtttcctagtttgctctttgattttcattgagtat........................................................................................ HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 181 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... Subject: NC_003028_SP_1694_SP_1695|hypothetical protein:acetyl xylan esterase, putative|NEGATIVE:NEGATIVE|[1598698,1599457]|760 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:210 Query End:254 Subject Strand: NEGATIVE Subject Start: 284 Subject End: 328 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtataa...................................................................................... .................................................................................................................................................................................................................tgcggctagcttcttagtttgctctttgattttcattgagtataa...................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:146 Query End:180 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 439 .................................................................................................................................................ttaatacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ .................................................................................................................................................ttaatacttttcaaaaatctcttcaaaccacgtca................................................................................................................................................................ Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:149 Query End:189 Subject Strand: POSITIVE Subject Start: 67 Subject End: 107 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... ....................................................................................................................................................atactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:215 Query End:257 Subject Strand: POSITIVE Subject Start: 358 Subject End: 400 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataactt................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtattactt................................................................................... Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 41 Query Start:215 Query End:255 Subject Strand: NEGATIVE Subject Start: 31 Subject End: 71 ......................................................................................................................................................................................................................ctagcttcctagtttgctttttgattttcatttagtataac..................................................................................... ......................................................................................................................................................................................................................ctagtttcctagtttgctctttgattttcattgagtataac..................................................................................... HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 40 Query Start:150 Query End:189 Subject Strand: NEGATIVE Subject Start: 279 Subject End: 318 .....................................................................................................................................................tacttttcgaaaatctcttcaaactacgtcaatgtcgcct....................................................................................................................................................... .....................................................................................................................................................tactcttcgaaaatctcttcaaaccacgtcaacgtcgcct....................................................................................................................................................... Subject: NC_008533_SPD_0631_SPD_0632|thiamine-phosphate pyrophosphorylase:phosphomethylpyrimidine kinase|POSITIVE:NEGATIVE|[652374,652581]|208 HSP 1 e-value: 8.0E-7 bit: 56.0 Len: 32 Query Start:149 Query End:180 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 162 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 46 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcgactagctttctagtttactctttgattttcattgagtat........................................................................................ Subject: NC_003098_spr0637_spr0638|Thiamine phosphate pyrophosphorylase:phosphomethylpyrimidine kinase|POSITIVE:NEGATIVE|[644843,645050]|208 HSP 1 e-value: 8.0E-7 bit: 56.0 Len: 32 Query Start:149 Query End:180 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 162 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 46 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcgactagctttctagtttactctttgattttcattgagtat........................................................................................ Subject: NC_003028_SP_0725_SP_0726|thiamine-phosphate pyrophosphorylase:phosphomethylpyrimidine kinase|POSITIVE:NEGATIVE|[690259,690467]|209 HSP 1 e-value: 8.0E-7 bit: 56.0 Len: 32 Query Start:149 Query End:180 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 162 ....................................................................................................................................................atacttttcgaaaatctcttcaaactacgtca................................................................................................................................................................ ....................................................................................................................................................atactcttcgaaaatctcttcaaactacgtca................................................................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 43 Query Start:210 Query End:252 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 46 .................................................................................................................................................................................................................tgcgactagcttcctagtttgctttttgattttcatttagtat........................................................................................ .................................................................................................................................................................................................................tgcgactagctttctagtttactctttgattttcattgagtat........................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGAAAAGUCUAGGCAAAACUCAAUUUGAGAAGAAAAGACAACUAAUCUUAUAGACUAUAAAGCGCAUUGUAUCAAGGUUUUGAACACCUGAUACGAUGCGUUUUUAUCAUGUUAGAAGUUUAUUGUCGUUUUCUUGUUUCAAUUAAUACUUUUCGAAAAUCUCUUCAAACUACGUCAAUGUCGCCUCACUGUACUUCAGCACAGCUUGCGACUAGCUUCCUAGUUUGCUUUUUGAUUUUCAUUUAGUAUAACUU ((((((.((....))............(((((((...(((((.(((.(((...(((...((((((((((((((((.(((.......)))))))))))))))))))......)))..))).)))))))).))))))).))))))...(((((....(((((((....(((((((.(.....(((((....((((.(....).))))...)))))......).)))))))......)))))))....)))))..... (-68.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUUAUACUAAAUGAAAAUCAAAAAGCAAACUAGGAAGCUAGUCGCAAGCUGUGCUGAAGUACAGUGAGGCGACAUUGACGUAGUUUGAAGAGAUUUUCGAAAAGUAUUAAUUGAAACAAGAAAACGACAAUAAACUUCUAACAUGAUAAAAACGCAUCGUAUCAGGUGUUCAAAACCUUGAUACAAUGCGCUUUAUAGUCUAUAAGAUUAGUUGUCUUUUCUUCUCAAAUUGAGUUUUGCCUAGACUUUUCAA .....(((((...((((((((......(((((((.(......(((((..(((((((....)))))))...))))).....).)))))))....))))))))...)))))...((((...(((((((.((((((.(((((.((((...(((((..(((((.(((((((((.......))).)))))).))))).))))).)).)).))).)).))))))))))))).))))...((((((.....))))))..... (-70.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 722 230 181 189 140 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 722 230 181 189 140 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 722 230 181 189 140 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 712 250 203 98 51 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 697 250 202 227 179 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 668 249 203 97 51 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 633 250 203 98 51 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 625 230 181 224 175 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 608 187 142 211 165 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 569 187 147 192 152 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 543 250 203 98 51 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 512 188 142 172 118 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 501 189 147 214 165 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 482 250 203 201 154 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 464 250 203 98 51 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 451 181 145 231 195 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 437 189 147 217 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 417 189 147 206 157 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 404 194 165 155 126 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 363 182 147 231 196 smit:SMT_957|5end_UDP-glucose_4-epimerase_905003..905233_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 727 230 181 71 22 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 727 230 181 50 1 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 722 230 181 74 25 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 722 230 181 74 25 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 722 230 181 74 25 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 712 250 203 58 11 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 705 250 203 87 40 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 702 250 202 53 5 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 681 250 203 91 44 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 648 250 204 91 45 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 618 250 202 55 7 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 602 250 203 77 30 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 571 250 203 57 10 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 566 244 203 85 44 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 562 250 205 46 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 557 187 147 140 100 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 517 250 210 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 515 187 147 75 35 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 512 188 142 76 22 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE 484 250 203 91 44 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE