Origin IGS: tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gctgtttctcctttgtttttattatactatttgtcaacatttttcattataccacaaaatggaaaaggcggtgaaagaaatctgtaatttgaaggatttccttcttacactcaatgaaaatcaaagagtaaactagaaagctagacgcaggctgctcaaaatatagctttgaggttgcagataaaactgacatggcttgaatagattttcaaagagta Mask Tandem Repeat Region ================================================ tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Find is-nt database================================================ Query_seq: SMT_1489:SMT_1490|SMT_1489:SMT_1490:K06147 ATP-binding cassette, subfamily B, bacterial:putative undecaprenyl-phosphate galactose phosphotransferase:->->:1470775..1470992 218 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1489:SMT_1490|SMT_1489:SMT_1490:K06147 ATP-binding cassette, subfamily B, bacterial:putative undecaprenyl-phosphate galactose phosphotransferase:->->:1470775..1470992 218 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1489:SMT_1490|SMT_1489:SMT_1490:K06147 ATP-binding cassette, subfamily B, bacterial:putative undecaprenyl-phosphate galactose phosphotransferase:->->:1470775..1470992 218 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Predict ORF larger than 30AA ================================================ Protein_Len: 51 Strand: + Start: 17 End: 169 ................ M Q A M S V L S A T S K L Y F E Q P A S S F L V Y S L I F I E C K K E I L Q I T D F F H R L F H F V V ................................................. Protein_Len: 44 Strand: - Start: 86 End: 217 ..................................................................................... N V R Q N E N L T L L F D K L N C I E K V A K E M K H Y L S F H Q C I T Y Y F C L L F M . tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1489:SMT_1490|SMT_1489:SMT_1490:K06147 ATP-binding cassette, subfamily B, bacterial:putative undecaprenyl-phosphate galactose phosphotransferase:->->:1470775..1470992 218 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Intra-Species Hit: Count: 11 Min: 1 Max: 218 Len: 218 Subject: smit_SMT_1489_SMT_1490|K06147 ATP-binding cassette, subfamily B, bacterial:putative undecaprenyl-phosphate galactose phosphotransferase|POSITIVE:POSITIVE|[1470775, 1470992]|218 HSP 1 e-value: 1.0E-120 bit: 432.0 Len: 218 Query Start:1 Query End:218 Subject Strand: POSITIVE Subject Start: 1 Subject End: 218 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaaacagc Subject: smit_SMT_1026_SMT_1027|sucrose phosphorylase:K02026 multiple sugar transport system permease protein|NEGATIVE:NEGATIVE|[962415,962730]|316 HSP 1 e-value: 6.0E-25 bit: 115.0 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 67 Subject End: 176 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaatcacgtcagctttatctgcaacctcaaagctgtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: smit_SMT_451_SMT_452|thiamine-phosphate pyrophosphorylase:phosphomethylpyrimidine kinase|POSITIVE:NEGATIVE|[389708,389866]|159 HSP 1 e-value: 6.0E-25 bit: 115.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 6 Subject End: 115 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaacgacgtcagctttatctgcaacctcaaagctgtgctttgagcaacctgcgactagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: smit_SMT_1591_SMT_1592|DNA-entry nuclease:putative hemolysin|POSITIVE:POSITIVE|[1579529,1579794]|266 HSP 1 e-value: 4.0E-20 bit: 99.6 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 192 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaaactgtgctttgagtaacctgcggctagcttcctagtttgcactttgattttcattgagt............................................................................................................ Subject: smit_SMT_1597_SMT_1598|K02032 peptide/nickel transport system ATP-binding protein:malolactic regulator, LysR family|POSITIVE:NEGATIVE|[1588048,1588450]|403 HSP 1 e-value: 9.0E-18 bit: 91.7 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 236 Subject End: 345 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgccacctcaaaacagtgttttgagcaacctgcggctagcttcctagtttgctttttgattttcattgagt............................................................................................................ Subject: smit_SMT_1144_SMT_1145|K02026 multiple sugar transport system permease protein:maltodextrose utilization protein MalA|POSITIVE:POSITIVE|[1089205,1089465]|261 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 29 Subject End: 139 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaacctcttcaaaccacgtcagcttccatctgcaacctcaaaacactgttttgagcaacctgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: smit_SMT_1075_SMT_1076|hypothetical protein:2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase / dihydroneopterin aldolase|POSITIVE:NEGATIVE|[1013931,1014090]|160 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 112 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctgcaaaatcaaaacagtgttttgagcagcctgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: smit_SMT_162_SMT_163|hypothetical protein:cardiolipin synthetase|POSITIVE:POSITIVE|[107195,107448]|254 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 122 Subject End: 232 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctgcaacctcaaaacagtgttttgagcaacctgcgactagcttcctagtttgctctttgcttttcattgagt............................................................................................................ Subject: smit_SMT_1604_SMT_1605|K05833 putative ABC transport system ATP-binding protein:hypothetical protein|POSITIVE:POSITIVE|[1595224,1595545]|322 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 71 Subject End: 180 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgtgtcaactctatctgcaacctccaaaccgtgttttgagcagcctgtggctagcttcctagtttgctctttgattttcagtgagt............................................................................................................ Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 160 Subject End: 270 tactctttgaaaatcta-ttcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatcaaattcaaaccacgtcagctctatctgcagcctcaaaacagtgttttgagcaacctgcggctagcttcctagtttggtctttgattttcattgagt............................................................................................................ Subject: smit_SMT_455_SMT_456|cation transport ATPase:pyruvate oxidase|POSITIVE:POSITIVE|[394054,394375]|322 HSP 1 e-value: 5.0E-13 bit: 75.8 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 23 Subject End: 132 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcaaaaatctcttccaaccacgtcagctttgtctgcaacctcaaagctgtgctttgagcaacctgtggcgagcttcctagtttgctctgtgattttcattgagt............................................................................................................ Inter-species Hit: Count: 60 Min: 1 Max: 213 Len: 213 Subject: NC_008533_SPD_1620_SPD_1621|glycosyl transferase, putative:ABC transporter, ATP-binding/permease protein|NEGATIVE:NEGATIVE|[1635849,1636020]|172 HSP 1 e-value: 2.0E-55 bit: 216.0 Len: 121 Query Start:93 Query End:213 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 125 ............................................................................................ctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaa..... ............................................................................................ctttgattttcattgagtactagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaa..... Subject: NC_003028_SP_1838_SP_1839|glycosyl transferase, putative:ABC transporter, ATP-binding/permease protein|NEGATIVE:NEGATIVE|[1748284,1748455]|172 HSP 1 e-value: 2.0E-55 bit: 216.0 Len: 121 Query Start:93 Query End:213 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 125 ............................................................................................ctttgattttcattgagtgtaagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaa..... ............................................................................................ctttgattttcattgagtactagaaggaaatccttcaaattacagatttctttcaccgccttttccattttgtggtataatgaaaaatgttgacaaatagtataataaaaacaaaggagaa..... Subject: NC_008533_SPD_1873_SPD_1874|hypothetical protein:LysM domain protein|NEGATIVE:NEGATIVE|[1851848,1852056]|209 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 18 Subject End: 127 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagttttatctgaaacctcaaagctgtgctttgagcaacctgcgactagctttctagtttactctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1874_spr1875|Transcriptional regulator - MarR family:hypothetical protein|NEGATIVE:NEGATIVE|[1844120,1844524]|405 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 323 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagttttatctgaaacctcaaagctgtgctttgagcaacctgcgactagctttctagtttactctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_0173_SPD_0174|MccC family protein:membrnae protein, putative|NEGATIVE:NEGATIVE|[177190,177443]|254 HSP 1 e-value: 4.0E-26 bit: 119.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 87 Subject End: 194 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagttttatctgcaacctcaaagctgtgctttgagcaacctgcagctagcttcctagtttgctctttgattttcattga.............................................................................................................. Subject: NC_003098_spr0168_spr0169|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[177190,177443]|254 HSP 1 e-value: 4.0E-26 bit: 119.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 87 Subject End: 194 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagttttatctgcaacctcaaagctgtgctttgagcaacctgcagctagcttcctagtttgctctttgattttcattga.............................................................................................................. Subject: NC_008533_SPD_0539_SPD_0540|Ser/Thr protein phosphatase family protein:amino acid ABC transporter, amino acid-binding protein, putative|POSITIVE:NEGATIVE|[553789,553969]|181 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 115 Query Start:2 Query End:116 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 180 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... .actcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaagctgtgctttgagcaacctacggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_003098_spr0544_spr0545|hypothetical protein:ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor precursor|POSITIVE:NEGATIVE|[546259,546439]|181 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 115 Query Start:2 Query End:116 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 180 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... .actcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaagctgtgctttgagcaacctacggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_003028_SP_0619_SP_0620|hypothetical protein:amino acid ABC transporter, amino acid-binding protein, putative|POSITIVE:NEGATIVE|[588415,588595]|181 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 115 Query Start:2 Query End:116 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 180 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... .actcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaagctgtgctttgagcaacctacggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_008533_SPD_1931_SPD_1932|hypothetical protein:maltodextrin phosphorylase|POSITIVE:NEGATIVE|[1902224,1903267]|1044 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 116 Query Start:1 Query End:116 Subject Strand: NEGATIVE Subject Start: 929 Subject End: 1044 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaggcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_003098_spr1915_spr1916|hypothetical protein:Maltodextrin phosphorylase|POSITIVE:NEGATIVE|[1894692,1895735]|1044 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 116 Query Start:1 Query End:116 Subject Strand: NEGATIVE Subject Start: 929 Subject End: 1044 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaggcggtgctttgagcaacctgcggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_008533_SPD_1458_SPD_1459|GTP pyrophosphokinase:metallo-beta-lactamase superfamily protein|NEGATIVE:POSITIVE|[1472689,1473682]|994 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 856 Subject End: 965 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaactgcgtcaattttatctgcaacctcaaagcagtgctttgaacagcctgcggctagctttctagtttgctctttgattttcattgagt............................................................................................................ HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 80 Query Start:27 Query End:106 Subject Strand: NEGATIVE Subject Start: 300 Subject End: 379 ..........................tgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcatt................................................................................................................ ..........................tgtcagtcttatctacaacctcaaagcggtgctttgagtaacctgcggctagtttcctagtttgctctttgattttcatt................................................................................................................ Subject: NC_003028_SP_2062_SP_2063|transcriptional regulator, MarR family:LysM domain-containing protein|NEGATIVE:NEGATIVE|[1963312,1963633]|322 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 240 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagttttatctgaaacttcaaagctgtgctttgagcaacctgcgactagcttcctagtttgctttttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_1882_SP_1883|hypothetical protein:dextran glucosidase DexS, putative|NEGATIVE:NEGATIVE|[1784624,1784878]|255 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 255 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgtgtcagttttatctgcaacctcaaagcggtgctttgagcaacctgtggctagcttcctagtttgttctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_1645_SP_1646|GTP pyrophosphokinase:metallo-beta-lactamase superfamily protein|NEGATIVE:POSITIVE|[1543974,1544931]|958 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 820 Subject End: 929 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgcgtcaactttatctgcaacctcaaagcagtgctttgaacagcctgcggctagctttctagtttgctctttgattttcattgagt............................................................................................................ HSP 2 e-value: 1.0E-10 bit: 67.9 Len: 106 Query Start:1 Query End:106 Subject Strand: NEGATIVE Subject Start: 300 Subject End: 405 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcatt................................................................................................................ tactcttcaaaaatctcttcaaaccgcgtcaactttatctgcaacctcaaagcggtgctttgagtaacctgcggctagtttcctagtttgctctttgattttcatt................................................................................................................ Subject: NC_003028_SP_0387_SP_0389|DNA-binding response regulator:hypothetical protein|POSITIVE:POSITIVE|[367533,368450]|918 HSP 1 e-value: 2.0E-22 bit: 107.0 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 393 Subject End: 502 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaacctgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_0457_SP_0458|undecaprenyl pyrophosphate phosphatase:DNA polymerase IV|POSITIVE:NEGATIVE|[430753,430898]|146 HSP 1 e-value: 6.0E-22 bit: 105.0 Len: 109 Query Start:1 Query End:109 Subject Strand: POSITIVE Subject Start: 36 Subject End: 144 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgag............................................................................................................. tactcttcgaaaatctcttcaaaccgcgtcagctttatctgcaacctcaaaacagtgttttgagcagcctgcggctagcctcctagtttgctctttgattttcattgag............................................................................................................. Subject: NC_003028_SP_0182_SP_0183|MccC family protein:hypothetical protein|NEGATIVE:NEGATIVE|[174852,175038]|187 HSP 1 e-value: 6.0E-22 bit: 105.0 Len: 101 Query Start:1 Query End:101 Subject Strand: POSITIVE Subject Start: 87 Subject End: 187 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattt..................................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagttttatctgcaacctcaaagctgtgctttgagcaacctgcagctagcttcctagtttgctctttgattt..................................................................................................................... Subject: NC_003028_SP_2105_SP_2106|hypothetical protein:glycogen phosphorylase family protein|POSITIVE:NEGATIVE|[2015357,2016398]|1042 HSP 1 e-value: 2.0E-21 bit: 103.0 Len: 116 Query Start:1 Query End:116 Subject Strand: NEGATIVE Subject Start: 928 Subject End: 1042 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagctttatctgcaacctcaaagcagtgctttgagca-actgcggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_008533_SPD_1419_SPD_1422|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1439453,1441070]|1618 HSP 1 e-value: 1.0E-20 bit: 101.0 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 1508 Subject End: 1618 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctgcaacctcaaaacactgttttgagcagcctgcggctagctttctagtttgcactttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_1725_SPD_1726|conserved hypothetical protein TIGR01033:pneumolysin|NEGATIVE:NEGATIVE|[1720577, 1721456]|880 HSP 1 e-value: 4.0E-20 bit: 99.6 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 408 Subject End: 517 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttagaaaatctcttcaaaccatgtcagccctatccgcaacctcaaaacagtgttttgagcaacctgcggctagctttctagtttgctctttgatttttattgagt............................................................................................................ Subject: NC_008533_SPD_0353_SPD_0355|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[356986,357757]|772 HSP 1 e-value: 4.0E-20 bit: 99.6 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 247 Subject End: 356 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaatctgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1738_spr1739|hypothetical protein:Pneumolysin (sulfhydryl-activated toxin that lyses cholesterol containing membranes)|NEGATIVE:NEGATIVE|[1713046,1713925]|880 HSP 1 e-value: 4.0E-20 bit: 99.6 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 408 Subject End: 517 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttagaaaatctcttcaaaccatgtcagccctatccgcaacctcaaaacagtgttttgagcaacctgcggctagctttctagtttgctctttgatttttattgagt............................................................................................................ Subject: NC_008533_SPD_0527_SPD_0528|oxidoreductase, putative:amino acid ABC transporter, permease protein|NEGATIVE:NEGATIVE|[539375,539631]|257 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 109 Query Start:2 Query End:110 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 256 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ .actcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr0531_spr0532|hypothetical protein:ABC transporter membrane-spanning permease - glutamine transport|NEGATIVE:NEGATIVE|[531857,532101]|245 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 109 Query Start:2 Query End:110 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 244 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ .actcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_1600_SP_1601|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1504655,1504893]|239 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 116 Query Start:1 Query End:116 Subject Strand: NEGATIVE Subject Start: 123 Subject End: 239 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaaga...................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagtttccatctgcaacctcaaaacactgttttgaacaacctgcggctagcttcctagtttgctctttgattttcattgagtataaga...................................................................................................... Subject: NC_003028_SP_0606_SP_0607|oxidoreductase, putative:amino acid ABC transporter, permease protein|NEGATIVE:NEGATIVE|[574009,574253]|245 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 109 Query Start:2 Query End:110 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 244 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ .actcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_2193_SP_2194|DNA-binding response regulator:ATP-dependent Clp protease, ATP-binding subunit|NEGATIVE:NEGATIVE|[2114767,2115407]|641 HSP 1 e-value: 6.0E-19 bit: 95.6 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 486 Subject End: 593 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaccagtgttttgagcaacctgcggctagctgcctagtttgctctttgattttcattga.............................................................................................................. HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 165 Subject End: 272 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagctctatctacaacctcaaaacagtgttttgagcaacctgcggctagcttcctagtttgttctttgattttcattga.............................................................................................................. Subject: NC_008533_SPD_1425_SPD_1426|transporter, major facilitator family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1444487,1444725]|239 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 239 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgttagtttccatctgcaacctcaaaacactgttttgaacaacctgcggctagctttctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_0409_SPD_0410|threonine dehydratase:hypothetical protein|POSITIVE:POSITIVE|[410381,411114]|734 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 115 Query Start:1 Query End:115 Subject Strand: POSITIVE Subject Start: 74 Subject End: 188 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaag....................................................................................................... tactcttcgaaaatctcttcaaaccacgttagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagtataag....................................................................................................... Subject: NC_003098_spr1453_spr1454|Major facilitator superfamily transporter - efflux?:hypothetical protein|NEGATIVE:NEGATIVE|[1436956,1437194]|239 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 239 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgttagtttccatctgcaacctcaaaacactgttttgaacaacctgcggctagctttctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr0406_spr0407|threonine dehydratase:hypothetical protein|POSITIVE:POSITIVE|[402852,403585]|734 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 115 Query Start:1 Query End:115 Subject Strand: POSITIVE Subject Start: 74 Subject End: 188 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaag....................................................................................................... tactcttcgaaaatctcttcaaaccacgttagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagtataag....................................................................................................... Subject: NC_003028_SP_1596_SP_1597|IS3-Spn1, hypothetical protein, interruption:hypothetical protein|NEGATIVE:NEGATIVE|[1501007,1501233]|227 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 117 Subject End: 227 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctgcaacctcaaaacactgttttgagcagcctgaggctagctttctagtttgcactttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_0450_SP_0451|threonine dehydratase:hypothetical protein|POSITIVE:POSITIVE|[422944,423677]|734 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 115 Query Start:1 Query End:115 Subject Strand: POSITIVE Subject Start: 74 Subject End: 188 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgtaag....................................................................................................... tactcttcgaaaatctcttcaaaccacgttagctctatctgcaacctcaaaacagtgttttgagcaacttgcggctagcttcctagtttgctctttgattttcattgagtataag....................................................................................................... Subject: NC_008533_SPD_2021_SPD_2022|hypothetical protein:ATP-dependent Clp protease, ATP-binding subunit|NEGATIVE:NEGATIVE|[2000243,2000460]|218 HSP 1 e-value: 9.0E-18 bit: 91.7 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 63 Subject End: 172 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaactacgtcagctctatctgcaacctcaaaccagtgttttgagcaacctgcggctagctgcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_1663_SPD_1664|alpha,alpha-phosphotrehalase:PTS system, trehalose-specific IIABC components|NEGATIVE:NEGATIVE|[1675447,1675623]|177 HSP 1 e-value: 9.0E-18 bit: 91.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 68 Subject End: 177 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaatagtgttttgagcaacctgtggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1998_spr1999|Response regulator:Class III stress response-related ATPase, truncation|NEGATIVE:NEGATIVE|[1992320,1992960]|641 HSP 1 e-value: 9.0E-18 bit: 91.7 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 486 Subject End: 595 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaactacgtcagctctatctgcaacctcaaaccagtgttttgagcaacctgcggctagctgcctagtttgctctttgattttcattgagt............................................................................................................ HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 165 Subject End: 272 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagctctatctacaatctaaaaacagtgttttgagcaacctgcggctaactgcctagtttattctttgattttcattga.............................................................................................................. Subject: NC_003098_spr1698_spr1699|Dextran glucosidase:Phosphotransferase system, trehalose-specific IIBC component|NEGATIVE:NEGATIVE|[1667916,1668092]|177 HSP 1 e-value: 9.0E-18 bit: 91.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 68 Subject End: 177 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaatagtgttttgagcaacctgtggctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_1968_SPD_1969|hypothetical protein:glycosyl hydrolase-related protein|NEGATIVE:NEGATIVE|[1937077,1937401]|325 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 325 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctacaacctcaaaacagtgttttgagcagcctgcagctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1948_spr1949|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1929575,1929899]|325 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 325 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttccatctacaacctcaaaacagtgttttgagcagcctgcagctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_1872_SP_1873|iron-compound ABC transporter, iron-compound-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1778228,1778451]|224 HSP 1 e-value: 6.0E-16 bit: 85.7 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 23 Subject End: 133 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgcgtcagctttcatctgcaacctcaaaacagtgttttgagcaacctgcggctagtttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_0265_SPD_0266|alcohol dehydrogenase, zinc-containing:Cof family protein|NEGATIVE:NEGATIVE|[264428,264765]|338 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 218 Subject End: 327 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttcatctacaacctcaaagcagtgctttgagcaacctacggctagcttcctagtttgctctttgattctcattgagt............................................................................................................ Subject: NC_003098_spr0262_spr0263|alcohol dehydrogenase:hypothetical protein|NEGATIVE:NEGATIVE|[264378,264715]|338 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 218 Subject End: 327 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttcatctacaacctcaaagcagtgctttgagcaacctacggctagcttcctagtttgctctttgattctcattgagt............................................................................................................ Subject: NC_003028_SP_1922_SP_1923|hypothetical protein:pneumolysin|NEGATIVE:NEGATIVE|[1831016, 1831895]|880 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 408 Subject End: 517 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccatgtcagccccatccgcaacctcaaaacagtgttttgagcaacctgaggctagctttctagtttgctctttgatttttattgagt............................................................................................................ Subject: NC_003028_SP_1883_SP_1884|dextran glucosidase DexS, putative:trehalose PTS system, IIABC components|NEGATIVE:NEGATIVE|[1786505,1786681]|177 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 68 Subject End: 177 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaatagtgttttgagcaacctgtggctagcttcctagtttgttctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr0413_spr0414|undecaprenyl pyrophosphate phosphatase:DNA polymerase IV|POSITIVE:NEGATIVE|[410512,410656]|145 HSP 1 e-value: 9.0E-15 bit: 81.8 Len: 109 Query Start:1 Query End:109 Subject Strand: POSITIVE Subject Start: 36 Subject End: 143 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgag............................................................................................................. tactcttagaaaatctcttcaaaccgcgtcagctttatctgcaacctcaaaacagtgttttgagca-cgtgcggctagcctcctagtttgctctttgattttcattgag............................................................................................................. Subject: NC_003028_SP_0716_SP_0717|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[682792,683027]|236 HSP 1 e-value: 9.0E-15 bit: 81.8 Len: 109 Query Start:2 Query End:110 Subject Strand: POSITIVE Subject Start: 38 Subject End: 146 .actctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ .actcttcgaaaatctcttcaaaccacgtcagttctatccacaacctcaaaacagtgttttgagcaacctgcggttagcctcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_2140_SP_2141|hypothetical protein:glycosyl hydrolase-related protein|NEGATIVE:NEGATIVE|[2050421,2050571]|151 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 107 Query Start:4 Query End:110 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 148 ...tctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ ...tcttcgaaaatctcttcaaaccacgtcagcttccatctgcaacctcaaaacagtgttttgagcaacctgcagctagcttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_0458_SP_0459|DNA polymerase IV:formate acetyltransferase|NEGATIVE:POSITIVE|[431934,432307]|374 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 112 Query Start:1 Query End:112 Subject Strand: POSITIVE Subject Start: 44 Subject End: 155 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgt.......................................................................................................... tactcttcgaaaatctcttcaaaccacgtcagctctatctgcaacctcaaaacagtgttttgagcaatctgcggctagcttcctagtttgcttttcgatttccattgagtgt.......................................................................................................... Subject: NC_003028_SP_0892_SP_0893|type I restriction-modification system, R subunit, putative:transcriptional repressor, putative|POSITIVE:NEGATIVE|[843476,843980]|505 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 266 Subject End: 376 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaatccgcgtcagcttccatctgcaacctcaaaacagtgttttgagcagcctgcagctagtttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_1652_SPD_1653|iron-compound ABC transporter, iron-compound-binding protein:conserved hypothetical protein TIGR00278|POSITIVE:NEGATIVE|[1667285,1667508]|224 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 23 Subject End: 133 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgcatcagctttcatctgcaacctcaaaacagtgttttgagcaatctgcggctagtttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_008533_SPD_0366_SPD_0367|helicase, RecD/TraA family protein:signal peptidase I|NEGATIVE:NEGATIVE|[371171,371403]|233 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 49 Subject End: 159 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatatcttcaaaccacgtcagcttccatctgcaacctcaaaacactgttttaagcagcctacggctagcttcctagtttgttctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1687_spr1688|ABC transporter substrate-binding protein - ferric iron transport:hypothetical protein|POSITIVE:NEGATIVE|[1659754,1659977]|224 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 110 Query Start:1 Query End:110 Subject Strand: NEGATIVE Subject Start: 23 Subject End: 133 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccgcatcagctttcatctgcaacctcaaaacagtgttttgagcaatctgcggctagtttcctagtttgctctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr0363_spr0364|Exonuclease V:Signal peptidase I|NEGATIVE:NEGATIVE|[363642,363874]|233 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 49 Subject End: 159 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatatcttcaaaccacgtcagcttccatctgcaacctcaaaacactgttttaagcagcctacggctagcttcctagtttgttctttgattttcattgagt............................................................................................................ Subject: NC_003028_SP_0285_SP_0286|alcohol dehydrogenase:Cof family protein|NEGATIVE:NEGATIVE|[263927,264265]|339 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 110 Query Start:1 Query End:110 Subject Strand: POSITIVE Subject Start: 218 Subject End: 328 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttct-agtttactctttgattttcattgagt............................................................................................................ tactcttcgaaaatctcttcaaaccacgtcagcttcatctacaacctcaaagcagtgctttgagcaacctacggctagcttcctaagtttgctctttgattctcattgagt............................................................................................................ Subject: NC_008533_SPD_0377_SPD_0378|aspartate kinase:enoyl-CoA hydratase/isomerase family protein|NEGATIVE:POSITIVE|[382966,383289]|324 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 112 Query Start:1 Query End:112 Subject Strand: NEGATIVE Subject Start: 181 Subject End: 293 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgt.......................................................................................................... tactcttcgaaaatctcttcaaaccgcgtcagcttccatctgcaacctcaaaacagtattttgagctgacttcgtctagcttcttagtttgctctttaatttttattgagtgt.......................................................................................................... Subject: NC_003098_spr0374_spr0375|aspartate kinase:enoyl-CoA hydratase|NEGATIVE:POSITIVE|[375437,375760]|324 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 112 Query Start:1 Query End:112 Subject Strand: NEGATIVE Subject Start: 181 Subject End: 293 tactctttgaaaatctattcaagccatgtcagtttt-atctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagtgt.......................................................................................................... tactcttcgaaaatctcttcaaaccgcgtcagcttccatctgcaacctcaaaacagtattttgagctgacttcgtctagcttcttagtttgctctttaatttttattgagtgt.......................................................................................................... Subject: NC_008533_SPD_2020_SPD_2021|DNA-binding response regulator:hypothetical protein|NEGATIVE:NEGATIVE|[1999820,2000107]|288 HSP 1 e-value: 2.0E-9 bit: 63.9 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 165 Subject End: 272 tactctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattga.............................................................................................................. tactcttcgaaaatctcttcaaaccacgtcagctctatctacaatctaaaaacagtgttttgagcaacctgcggctaactgcctagtttattctttgattttcattga.............................................................................................................. Subject: NC_008533_SPD_1744_SPD_1745|lipoprotein, putative:transcriptional regulator PlcR, putative|NEGATIVE:NEGATIVE|[1737854,1738235]|382 HSP 1 e-value: 8.0E-9 bit: 61.9 Len: 107 Query Start:4 Query End:110 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 213 ...tctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ ...tcttcgaaaatctcttcaaatcacgtcagctctatctgcaatctcaaaacactgttttgagcaacctgtggctagctacctagtttgatctttgattttcattgagt............................................................................................................ Subject: NC_003098_spr1762_spr1763|hypothetical protein:Transcriptional activator|NEGATIVE:NEGATIVE|[1730322,1730703]|382 HSP 1 e-value: 8.0E-9 bit: 61.9 Len: 107 Query Start:4 Query End:110 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 213 ...tctttgaaaatctattcaagccatgtcagttttatctgcaacctcaaagctatattttgagcagcctgcgtctagctttctagtttactctttgattttcattgagt............................................................................................................ ...tcttcgaaaatctcttcaaatcacgtcagctctatctgcaatctcaaaacactgttttgagcaacctgtggctagctacctagtttgatctttgattttcattgagt............................................................................................................ Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCUUUGAAAAUCUAUUCAAGCCAUGUCAGUUUUAUCUGCAACCUCAAAGCUAUAUUUUGAGCAGCCUGCGUCUAGCUUUCUAGUUUACUCUUUGAUUUUCAUUGAGUGUAAGAAGGAAAUCCUUCAAAUUACAGAUUUCUUUCACCGCCUUUUCCAUUUUGUGGUAUAAUGAAAAAUGUUGACAAAUAGUAUAAUAAAAACAAAGGAGAA (((((..((((((((.......((..((.(((......)))))..(((((((.....)))))))......))..((((....))))..........))))))))..)))))...((((((((((............)))))))))).......(((((..(((((..(((.(((.....((((....)))).))).)))...)))))))))). (-42.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUCCUUUGUUUUUAUUAUACUAUUUGUCAACAUUUUUCAUUAUACCACAAAAUGGAAAAGGCGGUGAAAGAAAUCUGUAAUUUGAAGGAUUUCCUUCUUACACUCAAUGAAAAUCAAAGAGUAAACUAGAAAGCUAGACGCAGGCUGCUCAAAAUAUAGCUUUGAGGUUGCAGAUAAAACUGACAUGGCUUGAAUAGAUUUUCAAAGAGUA .....(((((..((((((...(((..(((((...((((((((..(.(((.....))).....)..)))))))).((((((((((((((((....)))))....((((..((.....))..)))).......(((((((((.((.....))))......))))))).))))))))))).....))))))))....))))))....))))).... (-44.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 776 110 61 96 47 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 773 80 31 66 17 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 773 80 31 66 17 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 723 50 1 215 166 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 662 110 62 225 177 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 662 78 31 225 178 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 661 70 25 227 182 smit:SMT_1026|5end_sucrose_phosphorylase_962324..962554_NEGATIVE 660 50 1 218 168 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 654 48 1 172 124 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 638 110 61 96 47 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 617 108 62 205 159 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 617 108 62 205 159 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 617 108 62 205 159 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 603 78 31 64 17 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 577 110 61 199 150 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 425 99 52 231 183 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 406 34 1 231 197 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 402 50 1 223 171 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 368 31 1 227 197 smit:SMT_957|5end_UDP-glucose_4-epimerase_905003..905233_NEGATIVE 368 31 1 227 197 smit:SMT_950|5end_UDP-glucose_4-epimerase_898696..898926_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 776 110 61 89 40 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 763 109 61 88 40 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 745 110 61 85 36 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 737 110 61 56 7 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 697 110 61 75 26 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 695 110 66 89 45 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 666 110 61 55 6 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 654 48 1 76 28 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE 621 110 61 89 40 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 617 108 62 90 44 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 617 108 62 90 44 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 617 108 62 90 44 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 610 116 71 74 29 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 604 120 71 64 12 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 584 110 62 89 41 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 583 110 62 53 5 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 515 117 72 44 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 501 112 71 46 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 440 46 1 144 101 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 386 115 83 33 1 smit:SMT_1767|3end_oxidoreductase,_short_chain_dehydrogenase/reductase_family_1743243..1743393_NEGATIVE