Origin IGS: gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaatccctttctgattgcaaatgaaaacctgaggccaatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagtacaagaccccaggtttttc Mask Tandem Repeat Region ================================================ gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Find is-nt database================================================ Query_seq: SMT_1487:SMT_1488|SMT_1487:SMT_1488:hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial:->->:1467137..1467296 160 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1487:SMT_1488|SMT_1487:SMT_1488:hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial:->->:1467137..1467296 160 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1487:SMT_1488|SMT_1487:SMT_1488:hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial:->->:1467137..1467296 160 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 36 End: 158 ................................... M Q T A S T S P C R T R V Q P A A S F L V C S L I F I E Y W P Q V F I C N Q K G I .. gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1487:SMT_1488|SMT_1487:SMT_1488:hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial:->->:1467137..1467296 160 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Intra-Species Hit: Count: 33 Min: 1 Max: 160 Len: 160 Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 6.0E-86 bit: 317.0 Len: 160 Query Start:1 Query End:160 Subject Strand: POSITIVE Subject Start: 1 Subject End: 160 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-47 bit: 190.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 105 Subject End: 208 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-46 bit: 186.0 Len: 102 Query Start:21 Query End:122 Subject Strand: POSITIVE Subject Start: 55 Subject End: 156 ....................ctcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ....................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 6.0E-46 bit: 184.0 Len: 105 Query Start:19 Query End:123 Subject Strand: POSITIVE Subject Start: 192 Subject End: 296 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 6.0E-46 bit: 184.0 Len: 105 Query Start:18 Query End:122 Subject Strand: POSITIVE Subject Start: 49 Subject End: 153 .................gtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... .................gtactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 153 Subject End: 256 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 178 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 6.0E-43 bit: 174.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat...................................... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 559 Subject End: 662 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 225 Subject End: 328 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 5.0E-37 bit: 155.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 129 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtat...................................... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 2.0E-36 bit: 153.0 Len: 105 Query Start:19 Query End:123 Subject Strand: POSITIVE Subject Start: 177 Subject End: 281 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..................tactcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtatt..................................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 100 Query Start:19 Query End:118 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattga.......................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.......................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 108 Query Start:14 Query End:121 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 108 .............tcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta....................................... .............tcttatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta....................................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 202 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 124 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 100 Query Start:19 Query End:118 Subject Strand: POSITIVE Subject Start: 15 Subject End: 114 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattga.......................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.......................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 154 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 106 Subject End: 209 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 8.0E-36 bit: 151.0 Len: 100 Query Start:19 Query End:118 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 100 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattga.......................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga.......................................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 209 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 181 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 5.0E-31 bit: 135.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 3.0E-26 bit: 119.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 227 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgtggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 3.0E-26 bit: 119.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 216 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 5.0E-25 bit: 115.0 Len: 110 Query Start:14 Query End:123 Subject Strand: NEGATIVE Subject Start: 44 Subject End: 152 .............tcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... .............tcttatactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgtggctagcttcctagtttgctctttgattttcattgagtatt..................................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 7.0E-24 bit: 111.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagttcgctctttgattttcattgagtat...................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 4.0E-19 bit: 95.6 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 359 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcagcttcgccttgccgtactcaagtactgactacggctagcttcctagtttgatctttgattttcattgagtat...................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 49 Query Start:75 Query End:123 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 61 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..........................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtatt..................................... HSP 2 e-value: 2.0E-14 bit: 79.8 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 163 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.............................................................................................. Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 6.0E-15 bit: 81.8 Len: 41 Query Start:82 Query End:122 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 199 .................................................................................cggctagtttcctagtttgctctttgattttcattgagtat...................................... .................................................................................cggctagtttcctagtttgctctttgattttcattgagtat...................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 353 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 40 Query Start:82 Query End:121 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 .................................................................................cggctagtttcctagtttgctctttgattttcattgagta....................................... .................................................................................cggctagcttcctagtttgctctttgattttcattgagta....................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 302 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta.............................................................................................. Inter-species Hit: Count: 39 Min: 1 Max: 160 Len: 160 Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 6.0E-46 bit: 184.0 Len: 105 Query Start:19 Query End:123 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 113 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 190 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 54 Subject End: 157 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 8 Subject End: 111 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 2.0E-45 bit: 182.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 196 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 2.0E-39 bit: 163.0 Len: 86 Query Start:75 Query End:160 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 86 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggttttcatttgcaatcagaaagggatttt ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtattggcctcaggtttccatttgcaatcagaaagggatttt HSP 2 e-value: 7.0E-18 bit: 91.7 Len: 66 Query Start:1 Query End:66 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 205 gaaaaacctggggtcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. gaaaaacctggggtcttgtactcttcgaaaatc-tcttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 3.0E-38 bit: 159.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 2.0E-36 bit: 153.0 Len: 105 Query Start:19 Query End:123 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 112 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-36 bit: 153.0 Len: 105 Query Start:19 Query End:123 Subject Strand: NEGATIVE Subject Start: 188 Subject End: 292 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtatt..................................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 219 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 8.0E-33 bit: 141.0 Len: 103 Query Start:19 Query End:121 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 171 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta....................................... ..................tactcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta....................................... Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 1.0E-28 bit: 127.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat...................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 1.0E-28 bit: 127.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 1.0E-28 bit: 127.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat...................................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 1.0E-28 bit: 127.0 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 164 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 3.0E-26 bit: 119.0 Len: 104 Query Start:19 Query End:122 Subject Strand: POSITIVE Subject Start: 146 Subject End: 249 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat...................................... Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 1.0E-25 bit: 117.0 Len: 103 Query Start:19 Query End:121 Subject Strand: POSITIVE Subject Start: 48 Subject End: 149 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta....................................... ..................tactcttcgaaaatctc-ttcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta....................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 49 Query Start:75 Query End:123 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2011 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... HSP 2 e-value: 2.0E-14 bit: 79.8 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 1861 Subject End: 1908 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 1.0E-19 bit: 97.6 Len: 49 Query Start:75 Query End:123 Subject Strand: POSITIVE Subject Start: 249 Subject End: 297 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 102 Subject End: 148 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_008533_SPD_0652_SPD_0653|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[671147,671413]|267 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:78 Query End:122 Subject Strand: POSITIVE Subject Start: 163 Subject End: 207 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 43 Query Start:19 Query End:61 Subject Strand: POSITIVE Subject Start: 59 Subject End: 100 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttg................................................................................................... ..................tactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg................................................................................................... Subject: NC_003098_spr0659_spr0660|ABC transporter substrate-binding protein - branched chain amino acid transport:ABC transporter membrane-spanning permease - branched chain amino acid transport|POSITIVE:POSITIVE|[663616,663873]|258 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:78 Query End:122 Subject Strand: POSITIVE Subject Start: 163 Subject End: 207 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 43 Query Start:19 Query End:61 Subject Strand: POSITIVE Subject Start: 59 Subject End: 100 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttg................................................................................................... ..................tactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg................................................................................................... Subject: NC_003028_SP_0749_SP_0750|branched-chain amino acid ABC transporter, amino acid-binding protein:branched-chain amino acid ABC transporter, permease protein|POSITIVE:POSITIVE|[709061,709327]|267 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 45 Query Start:78 Query End:122 Subject Strand: POSITIVE Subject Start: 163 Subject End: 207 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 43 Query Start:19 Query End:61 Subject Strand: POSITIVE Subject Start: 59 Subject End: 100 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttg................................................................................................... ..................tactcttcgaaaatctc-ttcaaactgcgtcaacgtcgccttg................................................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 49 Query Start:75 Query End:123 Subject Strand: POSITIVE Subject Start: 648 Subject End: 696 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtatt..................................... ..........................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtatt..................................... HSP 2 e-value: 2.0E-14 bit: 79.8 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 546 Subject End: 593 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. HSP 2 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:75 Query End:122 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..........................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat...................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 55 Subject End: 102 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. HSP 2 e-value: 2.0E-14 bit: 79.8 Len: 48 Query Start:75 Query End:122 Subject Strand: POSITIVE Subject Start: 159 Subject End: 206 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..........................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtat...................................... Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 2.0E-14 bit: 79.8 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..........................................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtat...................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_008533_SPD_0561_SPD_0562|PTS system, IIC component, putative:beta-galactosidase precursor, putative|POSITIVE:POSITIVE|[579350,579653]|304 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 43 Query Start:78 Query End:120 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 63 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagt........................................ .............................................................................cctgcggctagcttcctagtttgctctttgattttcattgagt........................................ HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 47 Query Start:20 Query End:66 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 213 ...................actcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ...................actctgcgaaaatccaattcaaacttcgtcagtgtcgccttgccgta.............................................................................................. Subject: NC_003098_spr0564_spr0565|Phosphotransferase system sugar-specific EII component:beta-galactosidase precursor|POSITIVE:POSITIVE|[571819,572122]|304 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 43 Query Start:78 Query End:120 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 63 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagt........................................ .............................................................................cctgcggctagcttcctagtttgctctttgattttcattgagt........................................ HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 47 Query Start:20 Query End:66 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 213 ...................actcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ...................actctgcgaaaatccaattcaaacttcgtcagtgtcgccttgccgta.............................................................................................. Subject: NC_003028_SP_0647_SP_0648|PTS system, IIC component, putative:beta-galactosidase|POSITIVE:POSITIVE|[615048, 615441]|394 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 43 Query Start:78 Query End:120 Subject Strand: NEGATIVE Subject Start: 21 Subject End: 63 .............................................................................cctgcggctagtttcctagtttgctctttgattttcattgagt........................................ .............................................................................cctgcggctagcttcctagtttgctctttgattttcattgagt........................................ HSP 2 e-value: 1.0E-6 bit: 54.0 Len: 47 Query Start:20 Query End:66 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 303 ...................actcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ...................actctgcgaaaatccaattcaaacttcgtcagtgtcgccttgccgta.............................................................................................. Subject: NC_003028_SP_1607_SP_1608|UDP-glucose 4-epimerase:oxidoreductase, DadA family protein|NEGATIVE:NEGATIVE|[1509447,1509746]|300 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:19 Query End:63 Subject Strand: POSITIVE Subject Start: 106 Subject End: 150 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgcc................................................................................................. ..................tactcttcgaaaatccaattcaaactacgtcaacgtcgccttgcc................................................................................................. HSP 2 e-value: 4.0E-10 bit: 65.9 Len: 41 Query Start:81 Query End:121 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ................................................................................gcggctagtttcctagtttgctctttgattttcattgagta....................................... ................................................................................gcggctagtttcctagtttgttctttgatttttattgagta....................................... Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:82 Query End:122 Subject Strand: POSITIVE Subject Start: 248 Subject End: 288 .................................................................................cggctagtttcctagtttgctctttgattttcattgagtat...................................... .................................................................................cggctagcttcctagtttgctctttgattttcattgagtat...................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: POSITIVE Subject Start: 139 Subject End: 185 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat...................................... Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..........................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat...................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_008533_SPD_0077_SPD_0078|potassium uptake protein, Trk family protein:glycosyl transferase, group 2 family protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 40 Query Start:84 Query End:123 Subject Strand: NEGATIVE Subject Start: 127 Subject End: 166 ...................................................................................gctagtttcctagtttgctctttgattttcattgagtatt..................................... ...................................................................................gctagtttcctagtttgatctttgattttcattgagtatt..................................... HSP 2 e-value: 9.0E-8 bit: 58.0 Len: 53 Query Start:14 Query End:66 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 281 .............tcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. .............tcttatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 104 Query Start:19 Query End:122 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 272 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..................tactctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtat...................................... Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 176 ..........................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat...................................... ..........................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtat...................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 48 Query Start:19 Query End:66 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 279 ..................tactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. ..................tactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Subject: NC_003098_spr0071_spr0072|Trk transporter NAD+ binding protein - K+ transport:hypothetical protein|POSITIVE:POSITIVE|[78745,79053]|309 HSP 1 e-value: 6.0E-12 bit: 71.9 Len: 40 Query Start:84 Query End:123 Subject Strand: NEGATIVE Subject Start: 127 Subject End: 166 ...................................................................................gctagtttcctagtttgctctttgattttcattgagtatt..................................... ...................................................................................gctagtttcctagtttgatctttgattttcattgagtatt..................................... HSP 2 e-value: 9.0E-8 bit: 58.0 Len: 53 Query Start:14 Query End:66 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 281 .............tcttgtactcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgta.............................................................................................. .............tcttatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta.............................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAAAACCUGGGGUCUUGUACUCUUCGAAAAUCAAAUUCAAACUGCGUCAACGUCGCCUUGCCGUACUCGAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUUGGCCUCAGGUUUUCAUUUGCAAUCAGAAAGGGAUUUU (((((.(((((((((..((((((...((((((((((..(((((((.(..((((((((...((.((((....)))).))..)))))..)))..))))))))...))))))))))...)))))).))))))))))))))....................... (-58.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAUCCCUUUCUGAUUGCAAAUGAAAACCUGAGGCCAAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUCGAGUACGGCAAGGCGACGUUGACGCAGUUUGAAUUUGAUUUUCGAAGAGUACAAGACCCCAGGUUUUUC .......................(((((((((.(((...(((((..(((((((((((...((((((.(..(((..(((....(((((((....)))))))..)))...)))..)..))))))..)))))))))))..)))))...).)).))))))))). (-56.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1039 100 51 222 173 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 992 100 52 187 139 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 992 100 52 187 139 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 992 100 52 187 139 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 969 100 51 205 150 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 887 79 31 231 183 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 834 120 71 96 49 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 778 120 71 96 49 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 777 120 71 96 49 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 726 66 21 199 155 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 699 120 71 96 49 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 698 120 71 96 49 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 632 120 71 199 152 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 530 66 35 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 468 50 8 199 156 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 432 53 14 231 190 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 394 50 11 228 194 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 363 70 21 173 126 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 362 50 14 196 161 smit:SMT_1592|5end_putative_hemolysin_1579655..1579885_POSITIVE 360 85 43 231 191 smit:SMT_2052|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1961591..1961821_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 992 100 52 72 24 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 992 100 52 72 24 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 992 100 52 72 24 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 914 100 52 69 21 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 908 120 71 53 4 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 880 100 53 48 1 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 837 120 71 75 28 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 834 120 71 89 42 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 827 120 71 51 2 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 806 120 71 55 8 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 777 120 71 56 9 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 771 120 71 85 38 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 747 120 71 89 40 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 743 119 71 88 42 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 731 120 71 89 42 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 664 122 82 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 645 123 81 47 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 577 60 11 76 28 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 540 66 21 147 103 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 456 66 22 141 98 smit:SMT_1911|3end_hypothetical_protein_1857840..1857990_POSITIVE